from logging import BASIC_FORMAT from utils import * from simulator import * from networkx.algorithms.tree.branchings import Edmonds from broadcast import BroadCastTopology from pathlib import Path import graphviz as gv import networkx as nx import subprocess import argparse import json import sys import os def networkx_to_graphviz(g, src, dsts, label="partitions"): """Convert `networkx` graph `g` to `graphviz.Digraph`. @type g: `networkx.Graph` or `networkx.DiGraph` @rtype: `graphviz.Digraph` """ if g.is_directed(): h = gv.Digraph() else: h = gv.Graph() for u, d in g.nodes(data=True): # u = u.split(",")[0] if u.split(",")[0] == src: h.node(str(u.replace(":", " ")), fillcolor="red", style="filled") elif u.split(",")[0] in dsts: h.node(str(u.replace(":", " ")), fillcolor="green", style="filled") h.node(str(u.replace(":", " "))) for u, v, d in g.edges(data=True): # print('edge', u, v, d) h.edge(str(u.replace(":", " ")), str(v.replace(":", " ")), label=str(d[label])) return h def N_dijkstra(src, dsts, G, num_partitions): h = G.copy() h.remove_edges_from(list(h.in_edges(source_node)) + list(nx.selfloop_edges(h))) bc_topology = BroadCastTopology(src, dsts, num_partitions) for dst in dsts: path = nx.dijkstra_path(h, src, dst, weight="cost") for i in range(0, len(path) - 1): s, t = path[i], path[i + 1] for j in range(bc_topology.num_partitions): bc_topology.append_dst_partition_path(dst, j, [s, t, G[s][t]]) return bc_topology def N_direct(src, dsts, G, num_partitions): bc_topology = BroadCastTopology(src, dsts, num_partitions) for dst in dsts: edge = G[src][dst] for j in range(bc_topology.num_partitions): bc_topology.set_dst_partition_paths(dst, j, [[src, dst, edge]]) return bc_topology def MDST(src, dsts, G, num_partitions): # Construct MDST path h = G.copy() h.remove_edges_from(list(h.in_edges(src)) + list(nx.selfloop_edges(h))) DST_graph = Edmonds(h.subgraph([src] + dsts)) opt_DST = DST_graph.find_optimum(attr="cost", kind="min", preserve_attrs=True, style="arborescence") bc_topology = BroadCastTopology(src, dsts, num_partitions) # Construct MDST graph MDST_graph = nx.DiGraph() for edge in list(opt_DST.edges()): s, d = edge[0], edge[1] MDST_graph.add_edge(s, d, **G[s][d]) return append_src_dst_paths(src, dsts, MDST_graph, bc_topology), MDST_graph def MULTI_MDST(src, dsts, G, num_partitions): # Construct MDST path based on original graph h = G.copy() MDST_graphs = [] while len(list(h.edges())) > 0: _, MDST_graph = MDST(src, dsts, h, 1) print("MDST graph: ", MDST_graph.edges.data()) MDST_graphs.append(MDST_graph) h.remove_edges_from(list(MDST_graph.edges())) print("Number of MDSTs: ", len(MDST_graphs)) def Min_Steiner_Tree(src, dsts, G, num_partitions, hop_limit=3000): # TODO: need to download the dependencies first source_v, dest_v = src, dsts h = G.copy() h.remove_edges_from(list(h.in_edges(source_v)) + list(nx.selfloop_edges(h))) nodes, edges = list(h.nodes), list(h.edges) num_nodes, num_edges = len(nodes), len(edges) id_to_name = {nodes.index(n) + 1: n for n in nodes} config_loc = "write.set" write_loc = "test.stplog" param_loc = "test.stp" with open(config_loc, "w") as f: f.write('stp/logfile = "use_probname"') f.close() command = " ~/Documents/Packages/scipoptsuite-8.0.2/build/bin/applications/scipstp " # TODO: then replace this with where scipstp is installed command += f"-f {param_loc} -s {config_loc} -l {write_loc}" def construct_stp(): section_begin = '33D32945 STP File, STP Format Version 1.0\n\nSECTION Comment\nName "Relay: cloud regions"\nCreator "S. Liu"\n' section_begin += f'Remark "Cloud region problem adapted from relay"\nEND\n\nSECTION Graph\n' section_begin += f"Nodes {num_nodes}\nEdges {num_edges}\nHopLimit {hop_limit}\n" Edge_info = [] cnt = 0 for edge in edges: s, d = nodes.index(edge[0]) + 1, nodes.index(edge[1]) + 1 cost = h[edge[0]][edge[1]]["cost"] cnt += 1 Edge_info.append(f"A {s} {d} {cost}\n") if cnt == num_edges: Edge_info.append("END\n") s = nodes.index(source_v) + 1 v = [nodes.index(i) + 1 for i in dest_v] terminal_info = [f"T {i}\n" for i in v] terminal_info.append("END\n\nEOF") section_terminal = f"""\nSECTION Terminals\nRoot {s}\nTerminals {len(dest_v)}\n""" with open(param_loc, "w") as f: f.write(section_begin) for edge in Edge_info: f.write(edge.lstrip()) f.write(section_terminal) for t in terminal_info: f.write(t) f.close() return def read_result(loc): di_stree_graph = nx.DiGraph() with open(loc, "r") as f: lines = f.readlines() for line in lines: if line.startswith("E") and len(line.split()) == 3: l = line.split() src_r, dst_r = id_to_name[int(l[1])], id_to_name[int(l[2])] di_stree_graph.add_edge(src_r, dst_r, **G[src_r][dst_r]) # overlays = [node for node in di_stree_graph.nodes if node not in [source_v]+dest_v] return di_stree_graph construct_stp() # construct problem to a file process = subprocess.Popen(command, shell=True) # run the steiner tree solver process.wait() solution_graph = read_result(loc=write_loc) print( f"Number of overlays added: {len(solution_graph.nodes) - (1 + len(dsts))}, {[node for node in solution_graph.nodes if node not in [src]+dsts]}" ) bc_topology = BroadCastTopology(src, dsts, num_partitions) os.remove(config_loc) os.remove(write_loc) os.remove(param_loc) return append_src_dst_paths(src, dsts, solution_graph, bc_topology) if __name__ == "__main__": parser = argparse.ArgumentParser() parser.add_argument("jsonfile", help="input json file") parser.add_argument("-a", "--algo", type=str, nargs="?", const="") parser.add_argument("-n", "--num-vms", type=int, nargs="?", const="") args = vars(parser.parse_args()) print("Args:", args) print(f"\n==============> Baseline generation") with open(args["jsonfile"], "r") as f: config_name = args["jsonfile"].split("/")[1].split(".")[0] config = json.loads(f.read()) # generate default graph with node and edge info # G = make_nx_graph(throughput_path="profiles/aws_throughput_11_8.csv") G = make_nx_graph(num_vms=int(args["num_vms"])) # src, dst source_node = config["source_node"] terminal_nodes = config["dest_nodes"] print(f"source_v = '{source_node}'") print(f"dest_v = {terminal_nodes}") # baseline path generations if args["algo"] is None: algorithms = [ "Ndirect", "MDST", # "HST", ] else: algorithms = [args["algo"]] print(f"Algorithms: {algorithms}\n") directory = f"paths/{config_name}" if not os.path.exists(directory): Path(directory).mkdir(parents=True, exist_ok=True) num_partitions = config["num_partitions"] for algo in algorithms: outf = f"{directory}/{algo}.json" print(f"Generate {algo} paths into {outf}") if algo == "Ndirect": bc_t = N_direct(source_node, terminal_nodes, G, num_partitions) elif algo == "MDST": bc_t, mdgraph = MDST(source_node, terminal_nodes, G, num_partitions) elif algo == "MULTI-MDST": bc_t = MULTI_MDST(source_node, terminal_nodes, G, num_partitions) elif algo == "HST": bc_t = Min_Steiner_Tree(source_node, terminal_nodes, G, num_partitions) elif algo == "Ndijkstra": bc_t = N_dijkstra(source_node, terminal_nodes, G, num_partitions) else: raise NotImplementedError(algo) bc_t.set_num_partitions(config["num_partitions"]) # simple baseline, don't care about partitions, simply set it with open(outf, "w") as outfile: outfile.write( json.dumps( { "algo": algo, "source_node": bc_t.src, "terminal_nodes": bc_t.dsts, "num_partitions": bc_t.num_partitions, "generated_path": bc_t.paths, } ) ) # put the evaluate logic here input_dir = "paths" # input paths output_dir = "evals" # eval results with open(sys.argv[1], "r") as f: config_name = sys.argv[1].split("/")[1].split(".")[0] config = json.loads(f.read()) input_dir += f"/{config_name}" output_dir += f"/{config_name}" if not os.path.exists(output_dir): Path(output_dir).mkdir(parents=True, exist_ok=True) simulator = BCSimulator(int(args["num_vms"]), output_dir) for algo in algorithms: path = f"{input_dir}/{algo}.json" simulator.evaluate_path(path, config) # path of algorithm output, basic config to evaluate # nx.draw(mdgraph, with_labels=True) # plt.show() # h = networkx_to_graphviz(mdgraph, source_node, terminal_nodes) # h.render(filename="Ndirect")