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95d9557 | 1 2 3 4 5 6 7 8 | # Feature Reconstruction
This source-first release excludes all precomputed embeddings, graph tensors, structural features, and packed feature caches. Reconstruct derived features from `data/proteins.parquet` using the published PhaseFlow preprocessing workflow and its documented pretrained components. Store all generated artifacts outside this dataset directory so the distributed inventory remains stable.
Use `protein_id` and `sequence_sha256` together to bind reconstructed features to source records. Confirm sequence lengths and hashes before reusing any cache. `data/base_training_schedule.parquet` and `data/region_supervision.parquet` are protocol/supervision tables, not feature caches.
The files under `benchmark/` are evaluation inputs. Feature generation for benchmark sequences may be necessary for inference, but the benchmark must remain outside training, hyperparameter selection, and checkpoint selection.
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