Upload folder using huggingface_hub (#1)

- Upload folder using huggingface_hub (277054da0c4437591e16606f3529d0fd780ca4a3)

.gitattributes

@@ -57,3 +57,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 # Video files - compressed
 *.mp4 filter=lfs diff=lfs merge=lfs -text
 *.webm filter=lfs diff=lfs merge=lfs -text
+data.h5ad filter=lfs diff=lfs merge=lfs -text

README.md

@@ -1,3 +1,47 @@
----
-license: mit
----
+---
+# 1. Metadata Block
+license: mit
+task_categories:
+- tabular-classification
+tags:
+- biology
+- genomics
+pretty_name: "gReLU Tutorial 2 dataset"
+size_categories:
+- 1M<n<10M
+---
+
+# tutorial-2-data
+
+## Dataset Summary
+This dataset contains binary accessibility values for 1154611 CREs in 222 cell types. The original source of this data is CATlas (https://decoder-genetics.wustl.edu/catlasv1/humanenhancer/data/cCRE_by_cell_type/). For more details, see https://decoder-genetics.wustl.edu/catlasv1/catlas_humanenhancer/#!/. This version of the dataset is used in gReLU tutorial 2 (https://github.com/Genentech/gReLU/blob/main/docs/tutorials/2_finetune.ipynb).
+
+## Dataset Structure
+
+### Data Fields
+In `.obs`:
+
+| Column | Type | Description |
+| :--- | :--- | :--- |
+| `cell type` | string | Name of the cell type |
+
+In `.var`:
+
+| Column | Type | Description |
+| :--- | :--- | :--- |
+| `chrom` | string | Chromosome (e.g., `chr6`) |
+| `start` | int | Genomic start position (hg38) |
+| `end` | int | Genomic end position (hg38) |
+| `Class` | category | CRE class |
+       
+`.X` is a binary accessibility matrix of shape (222 × 1154611) in Compressed Sparse Row format.
+
+## Usage
+
+```python
+import anndata
+from huggingface_hub import hf_hub_download
+
+file_path = hf_hub_download(repo_id="Genentech/tutorial-2-data", filename="data.h5ad")
+ada = anndata.read_h5ad(file_path)
+```

data.h5ad

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+version https://git-lfs.github.com/spec/v1
+oid sha256:bbe4343c308c83efee0c4ec085229c82a6a7077df1bd66cb4096801a4578aa60
+size 196201614