Datasets:
Lal Claude Opus 4.6 commited on
Commit ·
a87b36e
1
Parent(s): 6d765d9
Add split distributions and fix loading code
Browse files- Add human split distribution (train/val/test counts)
- Add mouse split distribution (train/val/test counts)
- Fix repo_type="dataset" missing from hf_hub_download
- Update publication reference to Linder et al. 2025
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
README.md
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# borzoi-data
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## Dataset Summary
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This dataset contains the specific genomic intervals used for training, validating, and testing the Borzoi model, a deep learning architecture for predicting functional genomic tracks from DNA sequence. The intervals are provided for both human and mouse genomes. We modified the intervals provided in the original source by extending the input sequence to 524,288
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- **Publication:** [
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- **Original Source** https://github.com/calico/borzoi/tree/main/data
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- **Genome Builds:**
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- Human: hg38
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- Mouse: mm10
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| `human_intervals.tsv` | 55,497 | hg38 |
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| `mouse_intervals.tsv` | 49,369 | mm10 |
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## Usage
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```python
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from huggingface_hub import hf_hub_download
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import pandas as pd
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file_path = hf_hub_download(
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df_human = pd.read_csv(file_path, sep='\t')
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file_path = hf_hub_download(
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df_mouse = pd.read_csv(file_path, sep='\t')
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```
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# borzoi-data
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## Dataset Summary
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This dataset contains the specific genomic intervals used for training, validating, and testing the Borzoi model, a deep learning architecture for predicting functional genomic tracks from DNA sequence. The intervals are provided for both human and mouse genomes. We modified the intervals provided in the original source by extending the input sequence to 524,288 bp to create the full interval that was supplied to the model.
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- **Publication:** [Linder, J. et al. Nature Genetics (2025)](https://www.nature.com/articles/s41588-024-02053-6)
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- **Original Source:** https://github.com/calico/borzoi/tree/main/data
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- **Genome Builds:**
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- Human: hg38
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- Mouse: mm10
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| `human_intervals.tsv` | 55,497 | hg38 |
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| `mouse_intervals.tsv` | 49,369 | mm10 |
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### Data Splits
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**Human (hg38)**
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| Split | Count |
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|-------|-------|
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| train | 41,699 |
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| val | 6,910 |
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| test | 6,888 |
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**Mouse (mm10)**
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| Split | Count |
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|-------|-------|
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| train | 36,950 |
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| val | 6,318 |
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| test | 6,101 |
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## Usage
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```python
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from huggingface_hub import hf_hub_download
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import pandas as pd
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file_path = hf_hub_download(
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repo_id="Genentech/borzoi-data",
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filename="human_intervals.tsv",
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repo_type="dataset"
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)
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df_human = pd.read_csv(file_path, sep='\t')
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file_path = hf_hub_download(
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repo_id="Genentech/borzoi-data",
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filename="mouse_intervals.tsv",
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repo_type="dataset"
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)
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df_mouse = pd.read_csv(file_path, sep='\t')
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```
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