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results/archaea_genome_metrics_details.csv

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+,species_name,cds_gene,cds_bp,metric,Glimmer3,GeneMarkS2,Prodigal,MetaGeneMark2,MetaProdigal,GeneLM,type,GENERanno,best_model,second_best_model
+0,Acidianus_brierleyi_genome_0,1907,2140898,exact_match,0.6895647614053487,0.686418458311484,0.7136864184583115,0.729417933927635,0.6948085998951232,0.5506030414263241,genome,0.7399056109071841,GENERanno,MetaGeneMark2
+1,Acidianus_brierleyi_genome_0,1907,2140898,acc_end,0.8416360776088097,0.8332459360251704,0.853696906135291,0.8578919769271106,0.8426848453067646,0.7446250655479811,genome,0.8694284216046145,GENERanno,MetaGeneMark2
+2,Acidianus_brierleyi_genome_0,1907,2140898,acc_start,0.8306240167802832,0.8169900367068694,0.8337703198741478,0.8395385422128998,0.8274777136864184,0.7393812270582066,genome,0.8400629260618773,GENERanno,MetaGeneMark2
+3,Acidianus_brierleyi_genome_0,1907,2140898,acc_boundary,0.7094913476664919,0.6958573675930781,0.724698479286838,0.7404299947561616,0.7058206607236497,0.5694808599895124,genome,0.7435762978500262,GENERanno,MetaGeneMark2
+4,Acidianus_brierleyi_genome_0,1907,2140898,bp_precision,0.8259679030369355,0.8385976233931202,0.8288438007133497,0.8347886358358333,0.8286489519041281,0.831317075430186,genome,0.8304362275718347,GeneMarkS2,MetaGeneMark2
+5,Acidianus_brierleyi_genome_0,1907,2140898,bp_sensitivity,0.981478332923848,0.9784487630891336,0.9814512414883848,0.980547882243806,0.9824358750393526,0.8383267208433097,genome,0.9920752880333392,GENERanno,MetaProdigal
+6,Aeropyrum_pernix_genome_0,1151,1237020,exact_match,0.7245873153779322,0.7523892267593397,0.788879235447437,0.6880973066898349,0.7558644656820156,0.2476107732406603,genome,0.6776715899218071,Prodigal,MetaProdigal
+7,Aeropyrum_pernix_genome_0,1151,1237020,acc_end,0.8496959165942659,0.8627280625543006,0.8844483058210252,0.8314509122502172,0.8670721112076455,0.5725456125108601,genome,0.8210251954821894,Prodigal,MetaProdigal
+8,Aeropyrum_pernix_genome_0,1151,1237020,acc_start,0.8601216333622936,0.8844483058210252,0.8922675933970461,0.841876629018245,0.8774978279756733,0.6194613379669852,genome,0.8392701998262381,Prodigal,GeneMarkS2
+9,Aeropyrum_pernix_genome_0,1151,1237020,acc_boundary,0.7341442224152911,0.7593397046046916,0.7914856646394439,0.6933101650738488,0.7593397046046916,0.263249348392702,genome,0.6828844483058211,Prodigal,GeneMarkS2
+10,Aeropyrum_pernix_genome_0,1151,1237020,bp_precision,0.8243194363204851,0.831085411562363,0.830364711856794,0.829594670115765,0.8298430184373594,0.828448610736721,genome,0.8293825085242127,GeneMarkS2,Prodigal
+11,Aeropyrum_pernix_genome_0,1151,1237020,bp_sensitivity,0.9911464648914328,0.9937551535140904,0.995338798079255,0.9924172608365264,0.9947979822476596,0.6534130410179302,genome,0.996356566587444,GENERanno,Prodigal
+12,Archaeoglobus_fulgidus_genome_0,1582,1827853,exact_match,0.7319848293299621,0.7142857142857143,0.7882427307206068,0.7604298356510746,0.7711757269279393,0.4702907711757269,genome,0.7661188369152971,Prodigal,MetaProdigal
+13,Archaeoglobus_fulgidus_genome_0,1582,1827853,acc_end,0.8482932996207333,0.8400758533501896,0.8843236409608091,0.8742098609355247,0.8786346396965866,0.7225031605562579,genome,0.8691529709228825,Prodigal,MetaProdigal
+14,Archaeoglobus_fulgidus_genome_0,1582,1827853,acc_start,0.8584070796460177,0.8451327433628318,0.8849557522123894,0.8691529709228825,0.8742098609355247,0.7174462705436156,genome,0.8716814159292036,Prodigal,MetaProdigal
+15,Archaeoglobus_fulgidus_genome_0,1582,1827853,acc_boundary,0.7420986093552465,0.7212389380530974,0.7964601769911505,0.7730720606826802,0.7831858407079646,0.5056890012642224,genome,0.7699115044247787,Prodigal,MetaProdigal
+16,Archaeoglobus_fulgidus_genome_0,1582,1827853,bp_precision,0.899413848118216,0.898283992826499,0.8998944204185861,0.8972446156885991,0.8988084193880848,0.9007078719906801,genome,0.9000878953003435,GeneLM,GENERanno
+17,Archaeoglobus_fulgidus_genome_0,1582,1827853,bp_sensitivity,0.98848266244605,0.9928178031822034,0.9946292179951014,0.9937243312235722,0.9938321079430348,0.7985959483612741,genome,0.9966758814849992,GENERanno,Prodigal
+18,Caldivirga_maquilingensis_genome_0,1430,1558342,exact_match,0.7006993006993008,0.6958041958041958,0.7223776223776224,0.7797202797202797,0.7083916083916084,0.3986013986013986,genome,0.7965034965034965,GENERanno,MetaGeneMark2
+19,Caldivirga_maquilingensis_genome_0,1430,1558342,acc_end,0.8475524475524475,0.8363636363636363,0.8531468531468531,0.8811188811188811,0.8419580419580419,0.679020979020979,genome,0.8867132867132868,GENERanno,MetaGeneMark2
+20,Caldivirga_maquilingensis_genome_0,1430,1558342,acc_start,0.8377622377622378,0.8447552447552448,0.8552447552447553,0.8832167832167832,0.8482517482517482,0.676923076923077,genome,0.8986013986013986,GENERanno,MetaGeneMark2
+21,Caldivirga_maquilingensis_genome_0,1430,1558342,acc_boundary,0.7013986013986014,0.6965034965034965,0.7237762237762237,0.7811188811188812,0.7104895104895105,0.4034965034965035,genome,0.7986013986013986,GENERanno,MetaGeneMark2
+22,Caldivirga_maquilingensis_genome_0,1430,1558342,bp_precision,0.8401136779129422,0.8488615025413135,0.8441862653739217,0.8475545243721083,0.843955089067252,0.848598321515238,genome,0.8454073325793714,GeneMarkS2,GeneLM
+23,Caldivirga_maquilingensis_genome_0,1430,1558342,bp_sensitivity,0.9923020748975514,0.9892077605557702,0.9958231248339582,0.993687521737847,0.9947071952113208,0.7313317615773688,genome,0.9972798012246348,GENERanno,Prodigal
+24,Desulfurococcus_mucosus_genome_0,906,1020892,exact_match,0.6975717439293598,0.7417218543046358,0.6997792494481236,0.7041942604856513,0.6688741721854304,0.3090507726269316,genome,0.7185430463576159,GeneMarkS2,GENERanno
+25,Desulfurococcus_mucosus_genome_0,906,1020892,acc_end,0.8233995584988962,0.8587196467991169,0.8355408388520972,0.8388520971302428,0.8134657836644592,0.6203090507726269,genome,0.8454746136865342,GeneMarkS2,GENERanno
+26,Desulfurococcus_mucosus_genome_0,906,1020892,acc_start,0.8609271523178808,0.8785871964679912,0.8465783664459161,0.8554083885209713,0.8355408388520972,0.6699779249448123,genome,0.8675496688741722,GeneMarkS2,GENERanno
+27,Desulfurococcus_mucosus_genome_0,906,1020892,acc_boundary,0.7030905077262694,0.7472406181015453,0.6997792494481236,0.7075055187637969,0.6699779249448123,0.3322295805739514,genome,0.7240618101545254,GeneMarkS2,GENERanno
+28,Desulfurococcus_mucosus_genome_0,906,1020892,bp_precision,0.8503074149854626,0.8582641283975537,0.8574997027290736,0.8564879292379183,0.8560967638134741,0.8498431196772748,genome,0.857516640392363,GeneMarkS2,GENERanno
+29,Desulfurococcus_mucosus_genome_0,906,1020892,bp_sensitivity,0.9920422532452012,0.9962356449066112,0.9960034949828188,0.9951512990600376,0.9955068704623016,0.6964497713764042,genome,0.9974385145539392,GENERanno,GeneMarkS2
+30,Ferroplasma_acidarmanus_genome_0,1302,1492867,exact_match,0.7350230414746544,0.7450076804915514,0.8187403993855606,0.8210445468509985,0.7980030721966206,0.5599078341013825,genome,0.825652841781874,GENERanno,MetaGeneMark2
+31,Ferroplasma_acidarmanus_genome_0,1302,1492867,acc_end,0.8602150537634409,0.8671274961597543,0.8978494623655914,0.9055299539170508,0.8878648233486943,0.7741935483870968,genome,0.901689708141321,MetaGeneMark2,GENERanno
+32,Ferroplasma_acidarmanus_genome_0,1302,1492867,acc_start,0.857910906298003,0.8640552995391705,0.901689708141321,0.9062980030721968,0.8917050691244239,0.7534562211981567,genome,0.9147465437788018,GENERanno,MetaGeneMark2
+33,Ferroplasma_acidarmanus_genome_0,1302,1492867,acc_boundary,0.7403993855606759,0.7488479262672811,0.8210445468509985,0.8287250384024577,0.804147465437788,0.5775729646697388,genome,0.8287250384024577,MetaGeneMark2,GENERanno
+34,Ferroplasma_acidarmanus_genome_0,1302,1492867,bp_precision,0.8684043950618735,0.8764606858707963,0.870451714416836,0.8746638028082769,0.8706263081063018,0.8683645158691168,genome,0.8774206630842543,GENERanno,GeneMarkS2
+35,Ferroplasma_acidarmanus_genome_0,1302,1492867,bp_sensitivity,0.9897405462107476,0.9911686707523176,0.9960860545514102,0.9950893147212712,0.9947543887030794,0.815765905469141,genome,0.997066717932676,GENERanno,Prodigal
+36,Fervidicoccus_fontis_genome_0,958,999529,exact_match,0.7734864300626305,0.7974947807933194,0.7359081419624217,0.7578288100208769,0.7098121085594989,0.6210855949895616,genome,0.8006263048016702,GENERanno,GeneMarkS2
+37,Fervidicoccus_fontis_genome_0,958,999529,acc_end,0.8757828810020877,0.8862212943632568,0.8517745302713987,0.8622129436325678,0.8402922755741128,0.7860125260960334,genome,0.8956158663883089,GENERanno,GeneMarkS2
+38,Fervidicoccus_fontis_genome_0,958,999529,acc_start,0.884133611691023,0.894572025052192,0.8580375782881002,0.8705636743215032,0.8475991649269311,0.8016701461377871,genome,0.8924843423799582,GeneMarkS2,GENERanno
+39,Fervidicoccus_fontis_genome_0,958,999529,acc_boundary,0.778705636743215,0.8016701461377871,0.7379958246346555,0.7609603340292276,0.7139874739039666,0.6325678496868476,genome,0.8048016701461378,GENERanno,GeneMarkS2
+40,Fervidicoccus_fontis_genome_0,958,999529,bp_precision,0.8576036220818324,0.8665835085407056,0.8630309472079085,0.863351948316048,0.8636765907530477,0.8743605397564364,genome,0.865312770503574,GeneLM,GeneMarkS2
+41,Fervidicoccus_fontis_genome_0,958,999529,bp_sensitivity,0.9922533513284756,0.9946234676532648,0.9943123211032396,0.9939151340281271,0.9929676877809448,0.8496902040861246,genome,0.9971256461793504,GENERanno,GeneMarkS2
+42,Halobacterium_salinarum_genome_0,1589,1737116,exact_match,0.7331655129011957,0.7627438640654499,0.789175582127124,0.8483322844556325,0.7803650094398993,0.6733794839521712,genome,0.8747640025173065,GENERanno,MetaGeneMark2
+43,Halobacterium_salinarum_genome_0,1589,1737116,acc_end,0.8577721837633732,0.8747640025173065,0.8772813089993706,0.9150409062303336,0.8797986154814349,0.8118313404657017,genome,0.933291378225299,GENERanno,MetaGeneMark2
+44,Halobacterium_salinarum_genome_0,1589,1737116,acc_start,0.8596601636249214,0.8672120830711139,0.8829452485840151,0.9181875393329136,0.8848332284455632,0.8074260541220893,genome,0.9269981120201384,GENERanno,MetaGeneMark2
+45,Halobacterium_salinarum_genome_0,1589,1737116,acc_boundary,0.7400881057268722,0.7677784770295784,0.7935808684707363,0.8533668974197609,0.7853996224040277,0.6771554436752675,genome,0.8753933291378225,GENERanno,MetaGeneMark2
+46,Halobacterium_salinarum_genome_0,1589,1737116,bp_precision,0.8809556633735319,0.8852333482130919,0.890213074435268,0.8825569427778065,0.8819816352845397,0.8755205490655571,genome,0.8851737256414908,Prodigal,GeneMarkS2
+47,Halobacterium_salinarum_genome_0,1589,1737116,bp_sensitivity,0.9895412856711928,0.9909038889745992,0.9882811510572695,0.9936952972628196,0.9934638792112904,0.9058945977125304,genome,0.9972011080434467,GENERanno,MetaGeneMark2
+48,Haloferax_volcanii_genome_0,1971,2147802,exact_match,0.7447995941146626,0.7853881278538812,0.8346017250126839,0.8381532217148655,0.808726534753932,0.7031963470319634,genome,0.8736681887366818,GENERanno,MetaGeneMark2
+49,Haloferax_volcanii_genome_0,1971,2147802,acc_end,0.8619989852866565,0.8919330289193302,0.9081684424150176,0.9122272957889396,0.8995433789954338,0.8310502283105022,genome,0.9325215626585488,GENERanno,MetaGeneMark2
+50,Haloferax_volcanii_genome_0,1971,2147802,acc_start,0.86960933536276,0.8843226788432268,0.9122272957889396,0.9162861491628614,0.8970065956367326,0.8280060882800608,genome,0.93505834601725,GENERanno,MetaGeneMark2
+51,Haloferax_volcanii_genome_0,1971,2147802,acc_boundary,0.7498731608320649,0.7904616945712836,0.8386605783866058,0.8437341451040081,0.8138001014713343,0.7077625570776256,genome,0.8767123287671232,GENERanno,MetaGeneMark2
+52,Haloferax_volcanii_genome_0,1971,2147802,bp_precision,0.8426784185894051,0.8577642188402834,0.8532944934831778,0.8571482536912822,0.8555160265003641,0.852017508028501,genome,0.8607640134261236,GENERanno,GeneMarkS2
+53,Haloferax_volcanii_genome_0,1971,2147802,bp_sensitivity,0.9910615596782198,0.9904483746639589,0.993153931321416,0.9930598816836934,0.9938965509856122,0.9284245009549298,genome,0.9978140443113472,GENERanno,MetaProdigal
+54,Ignicoccus_hospitalis_genome_0,908,966723,exact_match,0.6068281938325991,0.7081497797356828,0.7059471365638766,0.6541850220264317,0.6718061674008811,0.2841409691629956,genome,0.6574889867841409,GeneMarkS2,Prodigal
+55,Ignicoccus_hospitalis_genome_0,908,966723,acc_end,0.7830396475770925,0.8436123348017621,0.8392070484581498,0.8127753303964758,0.8248898678414097,0.6046255506607929,genome,0.7951541850220264,GeneMarkS2,Prodigal
+56,Ignicoccus_hospitalis_genome_0,908,966723,acc_start,0.7929515418502202,0.8469162995594713,0.8447136563876652,0.8138766519823789,0.8259911894273128,0.6266519823788547,genome,0.8392070484581498,GeneMarkS2,Prodigal
+57,Ignicoccus_hospitalis_genome_0,908,966723,acc_boundary,0.6134361233480177,0.7136563876651982,0.7070484581497798,0.6585903083700441,0.6762114537444934,0.2984581497797356,genome,0.6607929515418502,GeneMarkS2,Prodigal
+58,Ignicoccus_hospitalis_genome_0,908,966723,bp_precision,0.7973121906861164,0.799961689652875,0.7999803626584301,0.7986889317669416,0.7987265870270845,0.7909072150766903,genome,0.7968035643017857,Prodigal,GeneMarkS2
+59,Ignicoccus_hospitalis_genome_0,908,966723,bp_sensitivity,0.9840719627028632,0.9935938216014308,0.9945041133809788,0.9912405104668038,0.9937386407481772,0.6661101473741703,genome,0.9975039385635802,GENERanno,Prodigal
+60,Korarchaeum_cryptofilum_genome_0,1076,1263029,exact_match,0.7044609665427509,0.7555762081784386,0.7760223048327137,0.7490706319702602,0.7611524163568774,0.3578066914498141,genome,0.7397769516728625,Prodigal,MetaProdigal
+61,Korarchaeum_cryptofilum_genome_0,1076,1263029,acc_end,0.8475836431226765,0.8773234200743495,0.8977695167286245,0.8856877323420075,0.8912639405204461,0.6775092936802974,genome,0.870817843866171,Prodigal,MetaProdigal
+62,Korarchaeum_cryptofilum_genome_0,1076,1263029,acc_start,0.8355018587360595,0.8661710037174721,0.8633828996282528,0.8531598513011153,0.8559479553903345,0.637546468401487,genome,0.8513011152416357,GeneMarkS2,Prodigal
+63,Korarchaeum_cryptofilum_genome_0,1076,1263029,acc_boundary,0.7100371747211895,0.7602230483271375,0.7778810408921933,0.7537174721189591,0.7648698884758365,0.3847583643122677,genome,0.741635687732342,Prodigal,MetaProdigal
+64,Korarchaeum_cryptofilum_genome_0,1076,1263029,bp_precision,0.8598925280061807,0.8652496617822938,0.865710532860144,0.8631385284057935,0.8653691830346469,0.8605896383313593,genome,0.8659410084377692,GENERanno,Prodigal
+65,Korarchaeum_cryptofilum_genome_0,1076,1263029,bp_sensitivity,0.9869678368430178,0.995532169095088,0.9977403527551624,0.9962194058885424,0.9972304673922768,0.7138893881296471,genome,0.9979675842755787,GENERanno,Prodigal
+66,Metallosphaera_sedula_genome_0,1426,1666563,exact_match,0.6542776998597476,0.6598877980364657,0.7349228611500701,0.7314165497896213,0.711781206171108,0.3884992987377279,genome,0.7629733520336606,GENERanno,Prodigal
+67,Metallosphaera_sedula_genome_0,1426,1666563,acc_end,0.8197755960729313,0.8155680224403927,0.8569424964936886,0.8499298737727911,0.8436185133239832,0.7012622720897616,genome,0.8653576437587658,GENERanno,Prodigal
+68,Metallosphaera_sedula_genome_0,1426,1666563,acc_start,0.8120617110799438,0.82328190743338,0.8562412342215989,0.8604488078541375,0.8492286115007013,0.664796633941094,genome,0.8835904628330996,GENERanno,MetaGeneMark2
+69,Metallosphaera_sedula_genome_0,1426,1666563,acc_boundary,0.6598877980364657,0.6690042075736325,0.7405329593267882,0.7370266479663394,0.7223001402524544,0.423562412342216,genome,0.7685834502103787,GENERanno,Prodigal
+70,Metallosphaera_sedula_genome_0,1426,1666563,bp_precision,0.8472848236875415,0.8528427069564049,0.8491403962225342,0.8523661333510778,0.8497705903393042,0.8491492148861272,genome,0.8505252571550174,GeneMarkS2,MetaGeneMark2
+71,Metallosphaera_sedula_genome_0,1426,1666563,bp_sensitivity,0.9868453817827468,0.9860377315469022,0.993332385274364,0.9915136721504078,0.9921845138767632,0.7362973976981368,genome,0.9976526539950784,GENERanno,Prodigal
+72,Methanobrevibacter_smithii_genome_0,1351,1520995,exact_match,0.8741672834937083,0.8697261287934863,0.8845299777942265,0.8541820873427091,0.8586232420429312,0.8201332346410066,genome,0.9022945965951148,GENERanno,Prodigal
+73,Methanobrevibacter_smithii_genome_0,1351,1520995,acc_end,0.93560325684678,0.932642487046632,0.9378238341968912,0.9259807549962992,0.9259807549962992,0.8919319022945966,genome,0.9496669133974832,GENERanno,Prodigal
+74,Methanobrevibacter_smithii_genome_0,1351,1520995,acc_start,0.9341228719467062,0.929681717246484,0.9393042190969652,0.92820133234641,0.924500370096225,0.8904515173945226,genome,0.9459659511472984,GENERanno,Prodigal
+75,Methanobrevibacter_smithii_genome_0,1351,1520995,acc_boundary,0.8808290155440415,0.8712065136935603,0.8860103626943006,0.8608438193930422,0.8623242042931162,0.8245743893412287,genome,0.9030347890451518,GENERanno,Prodigal
+76,Methanobrevibacter_smithii_genome_0,1351,1520995,bp_precision,0.9080713774709156,0.9086092088256988,0.90552904510463,0.907620732437162,0.9051732527696262,0.912286319682154,genome,0.9089967954551986,GeneLM,GENERanno
+77,Methanobrevibacter_smithii_genome_0,1351,1520995,bp_sensitivity,0.9947527769650788,0.996963829598388,0.99772780318147,0.9960880870745796,0.9967442365030784,0.929039214461586,genome,0.9981235967245126,GENERanno,Prodigal
+78,Methanocaldococcus_jannaschii_genome_0,1378,1304270,exact_match,0.8447024673439768,0.8599419448476052,0.7641509433962265,0.8243831640058055,0.7358490566037735,0.7387518142235123,genome,0.8635703918722787,GENERanno,GeneMarkS2
+79,Methanocaldococcus_jannaschii_genome_0,1378,1304270,acc_end,0.9136429608127722,0.918722786647315,0.872278664731495,0.8969521044992743,0.8570391872278664,0.8526850507982583,genome,0.9201741654571844,GENERanno,GeneMarkS2
+80,Methanocaldococcus_jannaschii_genome_0,1378,1304270,acc_start,0.9245283018867924,0.9361393323657474,0.8737300435413643,0.918722786647315,0.8570391872278664,0.8548621190130624,genome,0.9332365747460089,GeneMarkS2,GENERanno
+81,Methanocaldococcus_jannaschii_genome_0,1378,1304270,acc_boundary,0.8519593613933236,0.8686502177068215,0.7685050798258345,0.8316400580551524,0.7416545718432511,0.7467343976777939,genome,0.8664731494920174,GeneMarkS2,GENERanno
+82,Methanocaldococcus_jannaschii_genome_0,1378,1304270,bp_precision,0.8816976545633507,0.8855007072193662,0.880541234838785,0.8829466972409,0.8802542644216749,0.8854075019748936,genome,0.8853131859717188,GeneMarkS2,GeneLM
+83,Methanocaldococcus_jannaschii_genome_0,1378,1304270,bp_sensitivity,0.99448427089483,0.9955108988169628,0.994455902535518,0.9946061781686308,0.9928258719436928,0.9066182615562728,genome,0.997247502434312,GENERanno,GeneMarkS2
+84,Methanococcus_maripaludis_genome_0,1462,1356969,exact_match,0.905608755129959,0.90218878248974,0.8002735978112175,0.8727770177838577,0.7729138166894665,0.7770177838577291,genome,0.908344733242134,GENERanno,Glimmer3
+85,Methanococcus_maripaludis_genome_0,1462,1356969,acc_end,0.9500683994528044,0.9528043775649796,0.8919288645690835,0.9377564979480164,0.8789329685362517,0.8809849521203831,genome,0.9521203830369356,GeneMarkS2,GENERanno
+86,Methanococcus_maripaludis_genome_0,1462,1356969,acc_start,0.9500683994528044,0.9473324213406292,0.8939808481532148,0.9343365253077976,0.8796169630642955,0.8632010943912448,genome,0.9548563611491108,GENERanno,Glimmer3
+87,Methanococcus_maripaludis_genome_0,1462,1356969,acc_boundary,0.9076607387140904,0.905608755129959,0.8023255813953488,0.8782489740082079,0.7783857729138167,0.7811217510259918,genome,0.9110807113543092,GENERanno,Glimmer3
+88,Methanococcus_maripaludis_genome_0,1462,1356969,bp_precision,0.8881990846170139,0.8899120461808522,0.8857579468514157,0.8885605555059297,0.8853852973043964,0.8875963947780918,genome,0.8906440780437797,GENERanno,GeneMarkS2
+89,Methanococcus_maripaludis_genome_0,1462,1356969,bp_sensitivity,0.9950662100608046,0.9971288953542784,0.995690395285375,0.9969549783377512,0.9936181298172618,0.9147069682505644,genome,0.9987715268366484,GENERanno,GeneMarkS2
+90,Methanoculleus_bourgensis_genome_0,1719,2036191,exact_match,0.673065735892961,0.7382198952879581,0.7667248400232693,0.7271669575334497,0.7388016288539849,0.6178010471204188,genome,0.8126817917393834,GENERanno,Prodigal
+91,Methanoculleus_bourgensis_genome_0,1719,2036191,acc_end,0.8342059336823735,0.8586387434554974,0.8743455497382199,0.8528214077952297,0.8580570098894706,0.7969749854566609,genome,0.89586969168121,GENERanno,Prodigal
+92,Methanoculleus_bourgensis_genome_0,1719,2036191,acc_start,0.8155904595695171,0.8551483420593369,0.8650378126817917,0.8516579406631762,0.849912739965096,0.7934845840605003,genome,0.898196625945317,GENERanno,Prodigal
+93,Methanoculleus_bourgensis_genome_0,1719,2036191,acc_boundary,0.6823734729493892,0.743455497382199,0.7684700407213496,0.7376381617219313,0.7428737638161722,0.6329261198371146,genome,0.8161721931355439,GENERanno,Prodigal
+94,Methanoculleus_bourgensis_genome_0,1719,2036191,bp_precision,0.8599184343850179,0.8804822391246505,0.8669484758174059,0.8787553152455929,0.8641502538053687,0.882149731472273,genome,0.8832141075421869,GENERanno,GeneLM
+95,Methanoculleus_bourgensis_genome_0,1719,2036191,bp_sensitivity,0.9873754475881684,0.989724441371168,0.99332970237075,0.9903687817105566,0.9916564801632068,0.8838861383828923,genome,0.9946625832252476,GENERanno,Prodigal
+96,Methanosaeta_concilii_genome_0,2036,2257875,exact_match,0.6345776031434185,0.6517681728880157,0.6507858546168959,0.6925343811394892,0.6370333988212181,0.5083497053045186,genome,0.7519646365422397,GENERanno,MetaGeneMark2
+97,Methanosaeta_concilii_genome_0,2036,2257875,acc_end,0.8050098231827112,0.8158153241650294,0.8040275049115914,0.8388998035363457,0.7996070726915521,0.7387033398821218,genome,0.8713163064833006,GENERanno,MetaGeneMark2
+98,Methanosaeta_concilii_genome_0,2036,2257875,acc_start,0.8109037328094303,0.8197445972495089,0.8074656188605108,0.8256385068762279,0.7976424361493124,0.7465618860510805,genome,0.8668958742632613,GENERanno,MetaGeneMark2
+99,Methanosaeta_concilii_genome_0,2036,2257875,acc_boundary,0.6458742632612967,0.6669941060903732,0.6581532416502947,0.7033398821218074,0.6488212180746562,0.5343811394891945,genome,0.7608055009823183,GENERanno,MetaGeneMark2
+100,Methanosaeta_concilii_genome_0,2036,2257875,bp_precision,0.8425876951039659,0.8666703396923567,0.8664924170501124,0.8626844390323647,0.8615310204107024,0.8590654977660025,genome,0.8710404622033089,GENERanno,GeneMarkS2
+101,Methanosaeta_concilii_genome_0,2036,2257875,bp_sensitivity,0.9863367104024802,0.9823311742235508,0.9806481758290428,0.983968997397996,0.9813847090737972,0.7958651386812822,genome,0.993569617450036,GENERanno,Glimmer3
+102,Methanosarcina_acetivorans_genome_0,3454,3838349,exact_match,0.6832657788071801,0.7417486971627099,0.7420382165605095,0.719166184134337,0.7026635784597568,0.6160972785176607,genome,0.7955993051534452,GENERanno,Prodigal
+103,Methanosarcina_acetivorans_genome_0,3454,3838349,acc_end,0.821656050955414,0.8523451071221771,0.8532136653155762,0.8384481760277939,0.8222350897510133,0.7790966994788651,genome,0.8824551244933411,GENERanno,Prodigal
+104,Methanosarcina_acetivorans_genome_0,3454,3838349,acc_start,0.8187608569774175,0.8485813549507817,0.8532136653155762,0.8427909669947886,0.8404748118123915,0.780833815865663,genome,0.8885350318471338,GENERanno,Prodigal
+105,Methanosarcina_acetivorans_genome_0,3454,3838349,acc_boundary,0.6936884771279676,0.7504342790966995,0.7510133178922987,0.7269832078749277,0.7130862767805443,0.6323103647944412,genome,0.8022582513028373,GENERanno,Prodigal
+106,Methanosarcina_acetivorans_genome_0,3454,3838349,bp_precision,0.8453388198395404,0.8776899692089856,0.8742818333712316,0.8699019025654482,0.8719050715936361,0.8856432582171588,genome,0.8870063257480337,GENERanno,GeneLM
+107,Methanosarcina_acetivorans_genome_0,3454,3838349,bp_sensitivity,0.977732874212324,0.9831682840721362,0.984670492443496,0.9846493896203812,0.98218921729108,0.840257360651676,genome,0.990740810697516,GENERanno,Prodigal
+108,Methanospirillum_hungatei_genome_0,2217,2787035,exact_match,0.6874154262516915,0.6797474064050518,0.6874154262516915,0.7036535859269283,0.6923770861524583,0.5624718087505638,genome,0.790257104194858,GENERanno,MetaGeneMark2
+109,Methanospirillum_hungatei_genome_0,2217,2787035,acc_end,0.8421290031574199,0.8236355435272892,0.8434821831303564,0.8461885430762291,0.8394226432115471,0.7532701849345963,genome,0.8881371222372576,GENERanno,MetaGeneMark2
+110,Methanospirillum_hungatei_genome_0,2217,2787035,acc_start,0.8308525033829499,0.8294993234100135,0.8317546233649076,0.8335588633288228,0.8254397834912043,0.7717636445647271,genome,0.8836265223274695,GENERanno,MetaGeneMark2
+111,Methanospirillum_hungatei_genome_0,2217,2787035,acc_boundary,0.6986919260261615,0.6919260261614795,0.7045557059088858,0.7167343256653135,0.7018493459630131,0.5827695083446098,genome,0.7965719440685611,GENERanno,MetaGeneMark2
+112,Methanospirillum_hungatei_genome_0,2217,2787035,bp_precision,0.8632538100649549,0.887693061515197,0.8792379728498926,0.8850026772293579,0.878654488787247,0.887442473787703,genome,0.889138149576762,GENERanno,GeneMarkS2
+113,Methanospirillum_hungatei_genome_0,2217,2787035,bp_sensitivity,0.986941319359104,0.9802550021797358,0.9878548349769558,0.9844522942840688,0.9878641638874288,0.8229433788954928,genome,0.9929111044532988,GENERanno,MetaProdigal
+114,Methanothermobacter_thermautotrophicus_genome_0,1369,1443352,exact_match,0.7662527392257122,0.7888970051132214,0.7640613586559533,0.7560262965668371,0.7450693937180424,0.5493060628195763,genome,0.8195763330898466,GENERanno,GeneMarkS2
+115,Methanothermobacter_thermautotrophicus_genome_0,1369,1443352,acc_end,0.8882395909422937,0.8882395909422937,0.8802045288531775,0.8780131482834186,0.870708546384222,0.7596785975164354,genome,0.9050401753104456,GENERanno,GeneMarkS2
+116,Methanothermobacter_thermautotrophicus_genome_0,1369,1443352,acc_start,0.8772826880934989,0.8955441928414901,0.8772826880934989,0.870708546384222,0.8655953250547845,0.7720964207450693,genome,0.9094229364499636,GENERanno,GeneMarkS2
+117,Methanothermobacter_thermautotrophicus_genome_0,1369,1443352,acc_boundary,0.7742878013148283,0.7947406866325786,0.7677136596055515,0.7640613586559533,0.747991234477721,0.5712198685171658,genome,0.8217677136596055,GENERanno,GeneMarkS2
+118,Methanothermobacter_thermautotrophicus_genome_0,1369,1443352,bp_precision,0.9143007551901376,0.9129532803572268,0.9134169497983678,0.9115006754656908,0.913312097540646,0.8954144227888361,genome,0.9162464622731468,GENERanno,Glimmer3
+119,Methanothermobacter_thermautotrophicus_genome_0,1369,1443352,bp_sensitivity,0.9927245744627784,0.9960958934480292,0.9965081283013428,0.9957058292086752,0.9960279959427776,0.8075313575621192,genome,0.9985755380530876,GENERanno,Prodigal
+120,Natronomonas_pharaonis_genome_0,1818,2073516,exact_match,0.7942794279427943,0.7909790979097909,0.8652365236523653,0.856985698569857,0.8327832783278328,0.6276127612761276,genome,0.8850385038503851,GENERanno,Prodigal
+121,Natronomonas_pharaonis_genome_0,1818,2073516,acc_end,0.8998899889988999,0.8916391639163916,0.9262926292629264,0.927942794279428,0.9147414741474148,0.8030803080308031,genome,0.9372937293729372,GENERanno,MetaGeneMark2
+122,Natronomonas_pharaonis_genome_0,1818,2073516,acc_start,0.8850385038503851,0.8916391639163916,0.9306930693069309,0.9257425742574258,0.9125412541254124,0.7849284928492849,genome,0.94004400440044,GENERanno,Prodigal
+123,Natronomonas_pharaonis_genome_0,1818,2073516,acc_boundary,0.7964796479647965,0.7942794279427943,0.8652365236523653,0.8624862486248625,0.8371837183718371,0.6320132013201321,genome,0.8855885588558856,GENERanno,Prodigal
+124,Natronomonas_pharaonis_genome_0,1818,2073516,bp_precision,0.8757335975893725,0.8788470593453687,0.8764955821662831,0.8782426328105433,0.8755583875028033,0.8700025925641419,genome,0.88010922818264,GENERanno,GeneMarkS2
+125,Natronomonas_pharaonis_genome_0,1818,2073516,bp_sensitivity,0.993034536507073,0.9937646972581836,0.9975389628052064,0.996058385852822,0.9960222154061024,0.8739315250039064,genome,0.998216555840418,GENERanno,Prodigal
+126,Nitrosopumilus_maritimus_genome_0,1146,1235530,exact_match,0.7713787085514834,0.7626527050610821,0.7958115183246073,0.8158813263525305,0.7739965095986039,0.612565445026178,genome,0.8420593368237347,GENERanno,MetaGeneMark2
+127,Nitrosopumilus_maritimus_genome_0,1146,1235530,acc_end,0.8856893542757417,0.8760907504363001,0.8891797556719022,0.893542757417103,0.87521815008726,0.7609075043630017,genome,0.9109947643979056,GENERanno,MetaGeneMark2
+128,Nitrosopumilus_maritimus_genome_0,1146,1235530,acc_start,0.881326352530541,0.8699825479930192,0.893542757417103,0.9092495636998256,0.8856893542757417,0.7792321116928447,genome,0.9275741710296684,GENERanno,MetaGeneMark2
+129,Nitrosopumilus_maritimus_genome_0,1146,1235530,acc_boundary,0.7757417102966842,0.7661431064572426,0.7975567190226877,0.8184991273996509,0.7783595113438045,0.6230366492146597,genome,0.8446771378708552,GENERanno,MetaGeneMark2
+130,Nitrosopumilus_maritimus_genome_0,1146,1235530,bp_precision,0.8122453867739078,0.821533003784847,0.8160113589617697,0.8167827464210681,0.8145683201625185,0.8068193359611153,genome,0.8158038785585832,GeneMarkS2,MetaGeneMark2
+131,Nitrosopumilus_maritimus_genome_0,1146,1235530,bp_sensitivity,0.9935784643027687,0.991891738767978,0.9954238262122328,0.994638738031452,0.9943748836531692,0.8101235906857785,genome,0.9975735109629066,GENERanno,Prodigal
+132,Nitrososphaera_viennensis_genome_0,1626,1589805,exact_match,0.6476014760147601,0.6623616236162362,0.6642066420664207,0.6795817958179582,0.6537515375153752,0.3819188191881918,genome,0.7103321033210332,GENERanno,MetaGeneMark2
+133,Nitrososphaera_viennensis_genome_0,1626,1589805,acc_end,0.8050430504305043,0.8179581795817958,0.8105781057810578,0.8136531365313653,0.7976629766297663,0.6629766297662977,genome,0.8413284132841329,GENERanno,GeneMarkS2
+134,Nitrososphaera_viennensis_genome_0,1626,1589805,acc_start,0.8204182041820418,0.8167281672816729,0.8265682656826568,0.8370233702337023,0.8228782287822878,0.6752767527675276,genome,0.8517835178351784,GENERanno,MetaGeneMark2
+135,Nitrososphaera_viennensis_genome_0,1626,1589805,acc_boundary,0.6525215252152522,0.6648216482164822,0.6666666666666666,0.6801968019680197,0.6549815498154982,0.3942189421894219,genome,0.7121771217712177,GENERanno,MetaGeneMark2
+136,Nitrososphaera_viennensis_genome_0,1626,1589805,bp_precision,0.7253802062297389,0.7340642291494314,0.7361405506573162,0.728465968251437,0.7293447664236019,0.7260263963790325,genome,0.7312227542011916,Prodigal,GeneMarkS2
+137,Nitrososphaera_viennensis_genome_0,1626,1589805,bp_sensitivity,0.9839584099936785,0.98508496325021,0.985649183390416,0.9883948031362336,0.98699148637726,0.7250386053635509,genome,0.9939929739810858,GENERanno,MetaGeneMark2
+138,Promethearchaeum_syntrophicum_genome_0,2439,2769201,exact_match,0.8105781057810578,0.8031980319803198,0.8175481754817548,0.7728577285772857,0.7740877408774087,0.7191471914719147,genome,0.8577285772857729,GENERanno,Prodigal
+139,Promethearchaeum_syntrophicum_genome_0,2439,2769201,acc_end,0.9077490774907748,0.8909389093890939,0.904879048790488,0.8831488314883149,0.8810988109881098,0.8433784337843379,genome,0.924149241492415,GENERanno,Glimmer3
+140,Promethearchaeum_syntrophicum_genome_0,2439,2769201,acc_start,0.8962689626896269,0.8942189421894219,0.90159901599016,0.8778187781877819,0.8798687986879868,0.8450184501845018,genome,0.928659286592866,GENERanno,Prodigal
+141,Promethearchaeum_syntrophicum_genome_0,2439,2769201,acc_boundary,0.8126281262812628,0.8048380483804838,0.8183681836818368,0.7785977859778598,0.7765477654776548,0.7224272242722427,genome,0.8601886018860189,GENERanno,Prodigal
+142,Promethearchaeum_syntrophicum_genome_0,2439,2769201,bp_precision,0.7111811343085234,0.7227629950519527,0.7174486280042675,0.7211613431170075,0.7170041300740267,0.7218772620105536,genome,0.7216639956496845,GeneMarkS2,GeneLM
+143,Promethearchaeum_syntrophicum_genome_0,2439,2769201,bp_sensitivity,0.9925382808976309,0.98971436165161,0.996380905539179,0.9910071533268984,0.9943514392779722,0.8794475373943603,genome,0.996811715725944,GENERanno,Prodigal
+144,Pyrobaculum_aerophilum_genome_0,1433,1537158,exact_match,0.5826936496859735,0.5436147941381717,0.743893928820656,0.685973482205164,0.7215631542219121,0.2777390090718772,genome,0.688764829030007,Prodigal,MetaProdigal
+145,Pyrobaculum_aerophilum_genome_0,1433,1537158,acc_end,0.7787857641311933,0.7501744591765527,0.8653175157013259,0.8332170272156315,0.8569434752267969,0.6259595254710397,genome,0.8332170272156315,Prodigal,MetaProdigal
+146,Pyrobaculum_aerophilum_genome_0,1433,1537158,acc_start,0.7641311933007676,0.749476622470342,0.854152128401954,0.829030006978367,0.840195394277739,0.592463363572924,genome,0.8262386601535241,Prodigal,MetaProdigal
+147,Pyrobaculum_aerophilum_genome_0,1433,1537158,acc_boundary,0.5959525471039777,0.5519888346127007,0.7473831123517097,0.6992323796231682,0.7271458478715981,0.3042568039078855,genome,0.69155617585485,Prodigal,MetaProdigal
+148,Pyrobaculum_aerophilum_genome_0,1433,1537158,bp_precision,0.76144452711072,0.7824693822385794,0.7717425585393558,0.782247266062687,0.7721077103289217,0.7765776733699151,genome,0.7749605361011086,GeneMarkS2,MetaGeneMark2
+149,Pyrobaculum_aerophilum_genome_0,1433,1537158,bp_sensitivity,0.9873929680618388,0.9792435130285893,0.9949289533021328,0.9873734515254776,0.9935452308741196,0.6896831685487114,genome,0.9951729100066486,GENERanno,Prodigal
+150,Pyrococcus_furiosus_genome_0,1382,1537405,exact_match,0.7901591895803184,0.7865412445730825,0.7532561505065123,0.7619392185238785,0.7250361794500724,0.5969609261939218,genome,0.8010130246020261,GENERanno,Glimmer3
+151,Pyrococcus_furiosus_genome_0,1382,1537405,acc_end,0.8921852387843705,0.8842257597684515,0.8668596237337193,0.8712011577424024,0.8531114327062229,0.7771345875542692,genome,0.8856729377713459,Glimmer3,GENERanno
+152,Pyrococcus_furiosus_genome_0,1382,1537405,acc_start,0.877713458755427,0.8835021707670043,0.8574529667149059,0.8704775687409552,0.8480463096960926,0.7785817655571635,genome,0.8965267727930536,GENERanno,GeneMarkS2
+153,Pyrococcus_furiosus_genome_0,1382,1537405,acc_boundary,0.7973950795947902,0.7916063675832128,0.7568740955137482,0.7698986975397974,0.7322720694645442,0.6157742402315485,genome,0.804630969609262,GENERanno,Glimmer3
+154,Pyrococcus_furiosus_genome_0,1382,1537405,bp_precision,0.8812530242098854,0.8848583790400633,0.8804872297356121,0.8826470759816761,0.880693405846363,0.884020765777913,genome,0.8836570463808028,GeneMarkS2,GeneLM
+155,Pyrococcus_furiosus_genome_0,1382,1537405,bp_sensitivity,0.9903454197169906,0.9948972456834732,0.99334202763748,0.9939645051238938,0.992646049674614,0.8657061737147986,genome,0.9967991518175108,GENERanno,GeneMarkS2
+156,Staphylothermus_marinus_genome_0,1093,1151712,exact_match,0.8014638609332113,0.787740164684355,0.7090576395242452,0.7456541628545288,0.6825251601097896,0.6276303751143641,genome,0.797804208600183,Glimmer3,GENERanno
+157,Staphylothermus_marinus_genome_0,1093,1151712,acc_end,0.9057639524245196,0.9085086916742908,0.859103385178408,0.8874656907593779,0.8499542543458372,0.8234217749313815,genome,0.9112534309240622,GENERanno,GeneMarkS2
+158,Staphylothermus_marinus_genome_0,1093,1151712,acc_start,0.8856358645928637,0.8618481244281794,0.8225068618481244,0.8362305580969808,0.8032936870997255,0.7712717291857274,genome,0.8774016468435498,Glimmer3,GENERanno
+159,Staphylothermus_marinus_genome_0,1093,1151712,acc_boundary,0.8060384263494969,0.7904849039341263,0.7108874656907593,0.7483989021043,0.6861848124428179,0.6376944190301921,genome,0.8014638609332113,Glimmer3,GENERanno
+160,Staphylothermus_marinus_genome_0,1093,1151712,bp_precision,0.8183483027694944,0.8289994570421775,0.8213529002503246,0.8271716641939821,0.8204516919604689,0.8290668722440208,genome,0.8237839830879911,GeneLM,GeneMarkS2
+161,Staphylothermus_marinus_genome_0,1093,1151712,bp_sensitivity,0.9948224903448084,0.9929470214775916,0.9942780834097412,0.991429280931344,0.9923600691839628,0.8534642341140841,genome,0.9971129935261592,GENERanno,Glimmer3
+162,Sulfolobus_islandicus_genome_0,1737,1957840,exact_match,0.6902705814622913,0.6643638457109959,0.7397812320092113,0.7219343696027634,0.7351755900978699,0.5440414507772021,genome,0.7674150834772596,GENERanno,Prodigal
+163,Sulfolobus_islandicus_genome_0,1737,1957840,acc_end,0.8278641335636154,0.8031088082901554,0.8434081750143926,0.8399539435808866,0.8508923431203224,0.7426597582037997,genome,0.8641335636154289,GENERanno,MetaProdigal
+164,Sulfolobus_islandicus_genome_0,1737,1957840,acc_start,0.8422567645365573,0.8105929763960852,0.8554979850316637,0.8434081750143926,0.8480138169257341,0.743811168681635,genome,0.8681635002878526,GENERanno,Prodigal
+165,Sulfolobus_islandicus_genome_0,1737,1957840,acc_boundary,0.7098445595854922,0.6724237190558434,0.7472654001151411,0.7340241796200345,0.7443868739205527,0.56188831318365,genome,0.7697179044329303,GENERanno,Prodigal
+166,Sulfolobus_islandicus_genome_0,1737,1957840,bp_precision,0.8457257385601116,0.855393976330053,0.8482943526239357,0.8525283180318468,0.8471106432489335,0.8496298973636203,genome,0.8479178182916914,GeneMarkS2,MetaGeneMark2
+167,Sulfolobus_islandicus_genome_0,1737,1957840,bp_sensitivity,0.9810771053814408,0.9764071629959548,0.983682016916602,0.981122563641564,0.983980815592694,0.8116373145915907,genome,0.9918772729130062,GENERanno,MetaProdigal
+168,Sulfolobus_solfataricus_genome_0,1866,2000182,exact_match,0.632368703108253,0.6291532690246516,0.669882100750268,0.6838156484458735,0.669882100750268,0.4603429796355841,genome,0.7036441586280815,GENERanno,MetaGeneMark2
+169,Sulfolobus_solfataricus_genome_0,1866,2000182,acc_end,0.7958199356913184,0.792604501607717,0.8027867095391211,0.815112540192926,0.8113612004287245,0.6789924973204716,genome,0.8322615219721329,GENERanno,MetaGeneMark2
+170,Sulfolobus_solfataricus_genome_0,1866,2000182,acc_start,0.7995712754555199,0.7834941050375134,0.8038585209003215,0.822615219721329,0.8113612004287245,0.692390139335477,genome,0.8322615219721329,GENERanno,MetaGeneMark2
+171,Sulfolobus_solfataricus_genome_0,1866,2000182,acc_boundary,0.6484458735262594,0.6420150053590568,0.6768488745980707,0.6972132904608789,0.6832797427652733,0.4785637727759914,genome,0.7116827438370846,GENERanno,MetaGeneMark2
+172,Sulfolobus_solfataricus_genome_0,1866,2000182,bp_precision,0.855026219712241,0.8692513336758566,0.8609850665103518,0.8657883786075051,0.8593393722720593,0.8574666135842292,genome,0.8603669926572778,GeneMarkS2,MetaGeneMark2
+173,Sulfolobus_solfataricus_genome_0,1866,2000182,bp_sensitivity,0.9746258090513764,0.973575904592682,0.9751972570496084,0.9767416165128974,0.9794073739289724,0.791448978142989,genome,0.9894924561864872,GENERanno,MetaProdigal
+174,Thermococcus_kodakarensis_genome_0,1462,1602575,exact_match,0.7879616963064295,0.8084815321477428,0.7941176470588235,0.7236662106703147,0.7831737346101231,0.5512995896032832,genome,0.820109439124487,GENERanno,GeneMarkS2
+175,Thermococcus_kodakarensis_genome_0,1462,1602575,acc_end,0.884404924760602,0.899452804377565,0.8864569083447332,0.8488372093023255,0.8823529411764706,0.7551299589603283,genome,0.902872777017784,GENERanno,GeneMarkS2
+176,Thermococcus_kodakarensis_genome_0,1462,1602575,acc_start,0.8912448700410397,0.899452804377565,0.896032831737346,0.8570451436388509,0.8905608755129959,0.7770177838577291,genome,0.9097127222982216,GENERanno,GeneMarkS2
+177,Thermococcus_kodakarensis_genome_0,1462,1602575,acc_boundary,0.7948016415868673,0.8125854993160054,0.8002735978112175,0.728454172366621,0.7906976744186046,0.5711354309165527,genome,0.8221614227086184,GENERanno,GeneMarkS2
+178,Thermococcus_kodakarensis_genome_0,1462,1602575,bp_precision,0.8353119637745233,0.8336869219451403,0.8346623736472082,0.8306315152365292,0.8332366719413189,0.8221576024374588,genome,0.8354223862577466,GENERanno,Glimmer3
+179,Thermococcus_kodakarensis_genome_0,1462,1602575,bp_sensitivity,0.9926930096875342,0.9984880582812036,0.9977292794408998,0.997651903967053,0.9968974930970468,0.8456022339048095,genome,0.99915386175374,GENERanno,GeneMarkS2
+180,Thermococcus_litoralis_genome_0,1597,1708855,exact_match,0.7921102066374452,0.7971195992485911,0.7294927989981215,0.7507827175954915,0.7294927989981215,0.6249217282404509,genome,0.8140262993112085,GENERanno,GeneMarkS2
+181,Thermococcus_litoralis_genome_0,1597,1708855,acc_end,0.8872886662492173,0.8979336255479023,0.8584846587351284,0.8728866624921728,0.8584846587351284,0.7946149029430182,genome,0.8960551033187226,GeneMarkS2,GENERanno
+182,Thermococcus_litoralis_genome_0,1597,1708855,acc_start,0.8985597996242956,0.8922980588603632,0.8566061365059486,0.8672510958046337,0.8559799624295554,0.80463368816531,genome,0.9035691922354414,GENERanno,Glimmer3
+183,Thermococcus_litoralis_genome_0,1597,1708855,acc_boundary,0.8033813400125235,0.8071383844708829,0.7370068879148404,0.7608015028177834,0.73888541014402,0.6405760801502818,genome,0.8171571696931748,GENERanno,GeneMarkS2
+184,Thermococcus_litoralis_genome_0,1597,1708855,bp_precision,0.8396512018019855,0.8434462288494455,0.8425015457053172,0.8413807065993526,0.8424285447116117,0.842067878067334,genome,0.8438156609418656,GENERanno,GeneMarkS2
+185,Thermococcus_litoralis_genome_0,1597,1708855,bp_sensitivity,0.9929666355542162,0.9954062808137611,0.995161087394776,0.9946677746210182,0.9937660012113374,0.8803421004122644,genome,0.9978500223834088,GENERanno,GeneMarkS2
+186,Aeropyrum_pernix_genome_0,1151,1237020,exact_match,0.7245873153779322,0.6681146828844483,0.788879235447437,0.6646394439617723,0.7558644656820156,0.2476107732406603,genome,0.6776715899218071,Prodigal,MetaProdigal
+187,Aeropyrum_pernix_genome_0,1151,1237020,acc_end,0.8496959165942659,0.8166811468288445,0.8844483058210252,0.8201563857515204,0.8670721112076455,0.5725456125108601,genome,0.8210251954821894,Prodigal,MetaProdigal
+188,Aeropyrum_pernix_genome_0,1151,1237020,acc_start,0.8601216333622936,0.8323197219808862,0.8922675933970461,0.8262380538662033,0.8774978279756733,0.6194613379669852,genome,0.8392701998262381,Prodigal,MetaProdigal
+189,Aeropyrum_pernix_genome_0,1151,1237020,acc_boundary,0.7341442224152911,0.6750651607298002,0.7914856646394439,0.6689834926151172,0.7593397046046916,0.263249348392702,genome,0.6828844483058211,Prodigal,MetaProdigal
+190,Aeropyrum_pernix_genome_0,1151,1237020,bp_precision,0.8243194363204851,0.8322485664000501,0.830364711856794,0.8286341232867463,0.8298430184373594,0.828448610736721,genome,0.8293825085242127,GeneMarkS2,Prodigal
+191,Aeropyrum_pernix_genome_0,1151,1237020,bp_sensitivity,0.9911464648914328,0.988927422353721,0.995338798079255,0.9921343228080388,0.9947979822476596,0.6534130410179302,genome,0.996356566587444,GENERanno,Prodigal
+192,Archaeoglobus_fulgidus_genome_0,1582,1827853,exact_match,0.7319848293299621,0.683944374209861,0.7882427307206068,0.7585335018963337,0.7711757269279393,0.4702907711757269,genome,0.7661188369152971,Prodigal,MetaProdigal
+193,Archaeoglobus_fulgidus_genome_0,1582,1827853,acc_end,0.8482932996207333,0.8223767383059418,0.8843236409608091,0.870417193426043,0.8786346396965866,0.7225031605562579,genome,0.8691529709228825,Prodigal,MetaProdigal
+194,Archaeoglobus_fulgidus_genome_0,1582,1827853,acc_start,0.8584070796460177,0.8324905183312263,0.8849557522123894,0.8710493046776233,0.8742098609355247,0.7174462705436156,genome,0.8716814159292036,Prodigal,MetaProdigal
+195,Archaeoglobus_fulgidus_genome_0,1582,1827853,acc_boundary,0.7420986093552465,0.6927939317319848,0.7964601769911505,0.7711757269279393,0.7831858407079646,0.5056890012642224,genome,0.7699115044247787,Prodigal,MetaProdigal
+196,Archaeoglobus_fulgidus_genome_0,1582,1827853,bp_precision,0.899413848118216,0.8997526246676779,0.8998944204185861,0.897192259611894,0.8988084193880848,0.9007078719906801,genome,0.9000878953003435,GeneLM,GENERanno
+197,Archaeoglobus_fulgidus_genome_0,1582,1827853,bp_sensitivity,0.98848266244605,0.9907580095335894,0.9946292179951014,0.9937905291071,0.9938321079430348,0.7985959483612741,genome,0.9966758814849992,GENERanno,Prodigal
+198,Halobacterium_salinarum_genome_0,1589,1737116,exact_match,0.7331655129011957,0.7721837633731907,0.789175582127124,0.8489616110761485,0.7803650094398993,0.6733794839521712,genome,0.8747640025173065,GENERanno,MetaGeneMark2
+199,Halobacterium_salinarum_genome_0,1589,1737116,acc_end,0.8577721837633732,0.8797986154814349,0.8772813089993706,0.9137822529893016,0.8797986154814349,0.8118313404657017,genome,0.933291378225299,GENERanno,MetaGeneMark2
+200,Halobacterium_salinarum_genome_0,1589,1737116,acc_start,0.8596601636249214,0.8722466960352423,0.8829452485840151,0.920075519194462,0.8848332284455632,0.8074260541220893,genome,0.9269981120201384,GENERanno,MetaGeneMark2
+201,Halobacterium_salinarum_genome_0,1589,1737116,acc_boundary,0.7400881057268722,0.777218376337319,0.7935808684707363,0.8539962240402769,0.7853996224040277,0.6771554436752675,genome,0.8753933291378225,GENERanno,MetaGeneMark2
+202,Halobacterium_salinarum_genome_0,1589,1737116,bp_precision,0.8809556633735319,0.8855869425523711,0.890213074435268,0.8826059190198403,0.8819816352845397,0.8755205490655571,genome,0.8851737256414908,Prodigal,GeneMarkS2
+203,Halobacterium_salinarum_genome_0,1589,1737116,bp_sensitivity,0.9895412856711928,0.9916942794839262,0.9882811510572695,0.993697599929999,0.9934638792112904,0.9058945977125304,genome,0.9972011080434467,GENERanno,MetaGeneMark2
+204,Natronomonas_pharaonis_genome_0,1818,2073516,exact_match,0.7942794279427943,0.8074807480748075,0.8652365236523653,0.858085808580858,0.8327832783278328,0.6276127612761276,genome,0.8850385038503851,GENERanno,Prodigal
+205,Natronomonas_pharaonis_genome_0,1818,2073516,acc_end,0.8998899889988999,0.9037403740374036,0.9262926292629264,0.9268426842684268,0.9147414741474148,0.8030803080308031,genome,0.9372937293729372,GENERanno,MetaGeneMark2
+206,Natronomonas_pharaonis_genome_0,1818,2073516,acc_start,0.8850385038503851,0.8960396039603961,0.9306930693069309,0.927942794279428,0.9125412541254124,0.7849284928492849,genome,0.94004400440044,GENERanno,Prodigal
+207,Natronomonas_pharaonis_genome_0,1818,2073516,acc_boundary,0.7964796479647965,0.8091309130913091,0.8652365236523653,0.8635863586358636,0.8371837183718371,0.6320132013201321,genome,0.8855885588558856,GENERanno,Prodigal
+208,Natronomonas_pharaonis_genome_0,1818,2073516,bp_precision,0.8757335975893725,0.8800845221482414,0.8764955821662831,0.8781556547343218,0.8755583875028033,0.8700025925641419,genome,0.88010922818264,GENERanno,GeneMarkS2
+209,Natronomonas_pharaonis_genome_0,1818,2073516,bp_sensitivity,0.993034536507073,0.9948893570148484,0.9975389628052064,0.9961837767347828,0.9960222154061024,0.8739315250039064,genome,0.998216555840418,GENERanno,Prodigal

results/archaea_genome_metrics_summary.csv

@@ -0,0 +1,7 @@
+,metric,Glimmer3,GeneMarkS2,Prodigal,MetaGeneMark2,MetaProdigal,GeneLM,GENERanno,best_model,second_best_model
+0,acc_start,0.8558191185305201,0.8597149150752763,0.869763885601937,0.8697456809451858,0.8595328685077643,0.755529664488176,0.8924832972274308,GENERanno,Prodigal
+1,acc_end,0.8568385793085871,0.860151826837305,0.8702918206477217,0.8700187507964537,0.8600243942400466,0.7552201853234057,0.8896069614607417,GENERanno,Prodigal
+2,acc_boundary,0.7385629243960605,0.7471373177258743,0.7667437330469133,0.7661429793741239,0.7475196155176494,0.5681491325481058,0.8016056507254555,GENERanno,Prodigal
+3,exact_match,0.7304254428282755,0.7407656878629554,0.7619559083213486,0.7587154794196356,0.7409113251169649,0.552820811563598,0.7980557426589722,GENERanno,Prodigal
+4,bp_precision,0.8457914702328616,0.8560467673016776,0.8525219621142281,0.8534645493143334,0.8511023726890706,0.8520276529007742,0.8556399377041382,GeneMarkS2,GENERanno
+5,bp_sensitivity,0.988429867713898,0.9890170752565912,0.9916558319372109,0.9907933244808622,0.9913099384967295,0.8228371427948579,0.995831519025277,GENERanno,Prodigal

results/archaea_plasmid_metrics_details.csv

@@ -0,0 +1,91 @@
+,species_name,cds_gene,cds_bp,metric,Glimmer3,GeneMarkS2,Prodigal,MetaGeneMark2,MetaProdigal,GeneLM,type,GENERanno,best_model,second_best_model
+0,Halobacterium_salinarum_plasmid_1,97,109026,exact_match,0.5979381443298969,0.6597938144329897,0.7422680412371134,0.6494845360824743,0.7010309278350515,0.5257731958762887,plasmid,0.711340206185567,Prodigal,GENERanno
+1,Halobacterium_salinarum_plasmid_1,97,109026,acc_end,0.8041237113402062,0.8762886597938144,0.8865979381443299,0.8247422680412371,0.8556701030927835,0.7835051546391752,plasmid,0.8556701030927835,Prodigal,GeneMarkS2
+2,Halobacterium_salinarum_plasmid_1,97,109026,acc_start,0.7422680412371134,0.7216494845360825,0.8144329896907216,0.7835051546391752,0.8041237113402062,0.6804123711340206,plasmid,0.8144329896907216,Prodigal,GENERanno
+3,Halobacterium_salinarum_plasmid_1,97,109026,acc_boundary,0.6082474226804123,0.6597938144329897,0.7422680412371134,0.6494845360824743,0.7010309278350515,0.5257731958762887,plasmid,0.711340206185567,Prodigal,GENERanno
+4,Halobacterium_salinarum_plasmid_1,97,109026,bp_precision,0.8437726913970008,0.859594396350212,0.8438671035920915,0.8511475409836066,0.8427019958813903,0.8565715289022415,plasmid,0.8560987261146497,GeneMarkS2,GeneLM
+5,Halobacterium_salinarum_plasmid_1,97,109026,bp_sensitivity,0.9805550969493516,0.9781428283161816,0.9873057802725956,0.9762441986315192,0.9871406820391466,0.8054409040045494,plasmid,0.986241813879258,Prodigal,MetaProdigal
+6,Halobacterium_salinarum_plasmid_2,55,63643,exact_match,0.6181818181818182,0.5818181818181818,0.6363636363636364,0.6727272727272727,0.6363636363636364,0.509090909090909,plasmid,0.6909090909090909,GENERanno,MetaGeneMark2
+7,Halobacterium_salinarum_plasmid_2,55,63643,acc_end,0.7818181818181819,0.8,0.7818181818181819,0.7818181818181819,0.7818181818181819,0.7272727272727273,plasmid,0.8181818181818182,GENERanno,GeneMarkS2
+8,Halobacterium_salinarum_plasmid_2,55,63643,acc_start,0.7090909090909091,0.6909090909090909,0.7818181818181819,0.8,0.7636363636363637,0.6363636363636364,plasmid,0.8,MetaGeneMark2,GENERanno
+9,Halobacterium_salinarum_plasmid_2,55,63643,acc_boundary,0.6181818181818182,0.5818181818181818,0.6363636363636364,0.6727272727272727,0.6363636363636364,0.509090909090909,plasmid,0.6909090909090909,GENERanno,MetaGeneMark2
+10,Halobacterium_salinarum_plasmid_2,55,63643,bp_precision,0.7173056994818653,0.7357873064610185,0.7198507462686567,0.7361198869800546,0.7173163100409155,0.7462665226232842,plasmid,0.7413662687625576,GeneLM,GENERanno
+11,Halobacterium_salinarum_plasmid_2,55,63643,bp_sensitivity,0.9788664896375092,0.9714501202017504,0.9851672611284824,0.970177395785868,0.9834231572993102,0.7380701726819917,plasmid,0.9856072152475528,GENERanno,Prodigal
+12,Haloferax_volcanii_plasmid_1,38,46760,exact_match,0.5526315789473685,0.5789473684210527,0.631578947368421,0.5789473684210527,0.631578947368421,0.4736842105263157,plasmid,0.6842105263157895,GENERanno,MetaProdigal
+13,Haloferax_volcanii_plasmid_1,38,46760,acc_end,0.6842105263157895,0.7105263157894737,0.7105263157894737,0.7368421052631579,0.7105263157894737,0.6842105263157895,plasmid,0.7894736842105263,GENERanno,MetaGeneMark2
+14,Haloferax_volcanii_plasmid_1,38,46760,acc_start,0.8157894736842105,0.7894736842105263,0.8421052631578947,0.7631578947368421,0.8421052631578947,0.7105263157894737,plasmid,0.8421052631578947,Prodigal,GENERanno
+15,Haloferax_volcanii_plasmid_1,38,46760,acc_boundary,0.6052631578947368,0.6052631578947368,0.6578947368421053,0.6052631578947368,0.6578947368421053,0.5,plasmid,0.7105263157894737,GENERanno,MetaProdigal
+16,Haloferax_volcanii_plasmid_1,38,46760,bp_precision,0.6488499701475564,0.6808878728432629,0.6654534292229434,0.6834724898308714,0.671708658623137,0.6787300857843137,plasmid,0.6953743930488117,GENERanno,MetaGeneMark2
+17,Haloferax_volcanii_plasmid_1,38,46760,bp_sensitivity,0.9761334473909324,0.9426860564585116,0.9735885372112916,0.9558383233532934,0.971535500427716,0.7580410607356716,plasmid,0.9892429426860564,GENERanno,Glimmer3
+18,Haloferax_volcanii_plasmid_2,1,2646,exact_match,1.0,1.0,1.0,1.0,1.0,0.0,plasmid,1.0,Glimmer3,GeneMarkS2
+19,Haloferax_volcanii_plasmid_2,1,2646,acc_end,1.0,1.0,1.0,1.0,1.0,1.0,plasmid,1.0,Glimmer3,GeneMarkS2
+20,Haloferax_volcanii_plasmid_2,1,2646,acc_start,1.0,1.0,1.0,1.0,1.0,0.0,plasmid,1.0,Glimmer3,GeneMarkS2
+21,Haloferax_volcanii_plasmid_2,1,2646,acc_boundary,1.0,1.0,1.0,1.0,1.0,0.0,plasmid,1.0,Glimmer3,GeneMarkS2
+22,Haloferax_volcanii_plasmid_2,1,2646,bp_precision,0.5354107648725213,0.5065084226646248,0.4999055356130739,0.5076745970836531,0.4999055356130739,0.4343232438606511,plasmid,0.5210712879086254,Glimmer3,GENERanno
+23,Haloferax_volcanii_plasmid_2,1,2646,bp_sensitivity,1.0,1.0,1.0,1.0,1.0,0.5748299319727891,plasmid,1.0,Glimmer3,GeneMarkS2
+24,Haloferax_volcanii_plasmid_3,267,351053,exact_match,0.7228464419475655,0.7715355805243446,0.7865168539325843,0.7940074906367042,0.7602996254681648,0.6479400749063671,plasmid,0.8089887640449438,GENERanno,MetaGeneMark2
+25,Haloferax_volcanii_plasmid_3,267,351053,acc_end,0.850187265917603,0.8838951310861424,0.8913857677902621,0.902621722846442,0.8838951310861424,0.8014981273408239,plasmid,0.902621722846442,MetaGeneMark2,GENERanno
+26,Haloferax_volcanii_plasmid_3,267,351053,acc_start,0.8651685393258427,0.8838951310861424,0.8838951310861424,0.8876404494382022,0.8689138576779026,0.797752808988764,plasmid,0.9101123595505618,GENERanno,MetaGeneMark2
+27,Haloferax_volcanii_plasmid_3,267,351053,acc_boundary,0.7340823970037453,0.7790262172284644,0.7902621722846442,0.8014981273408239,0.7640449438202247,0.6479400749063671,plasmid,0.8202247191011236,GENERanno,MetaGeneMark2
+28,Haloferax_volcanii_plasmid_3,267,351053,bp_precision,0.9119203923639296,0.9263808405878696,0.9212691944278754,0.923796738344706,0.9207461547198618,0.9220006806965796,plasmid,0.9281399542913435,GENERanno,GeneMarkS2
+29,Haloferax_volcanii_plasmid_3,267,351053,bp_sensitivity,0.9888478377908748,0.993653379973964,0.9943114002728932,0.9938157486191544,0.99294693393875,0.9260111721022182,plasmid,0.998350676393593,GENERanno,Prodigal
+30,Haloferax_volcanii_plasmid_4,387,445597,exact_match,0.6408268733850129,0.6795865633074936,0.7286821705426356,0.7209302325581395,0.7286821705426356,0.5581395348837209,plasmid,0.7777777777777778,GENERanno,MetaProdigal
+31,Haloferax_volcanii_plasmid_4,387,445597,acc_end,0.7906976744186046,0.8087855297157622,0.8242894056847545,0.8242894056847545,0.8268733850129198,0.7364341085271318,plasmid,0.8527131782945736,GENERanno,MetaProdigal
+32,Haloferax_volcanii_plasmid_4,387,445597,acc_start,0.813953488372093,0.8165374677002584,0.8656330749354005,0.8475452196382429,0.8578811369509044,0.7545219638242894,plasmid,0.8992248062015504,GENERanno,Prodigal
+33,Haloferax_volcanii_plasmid_4,387,445597,acc_boundary,0.6434108527131783,0.6847545219638242,0.7338501291989664,0.7286821705426356,0.7364341085271318,0.5658914728682171,plasmid,0.7881136950904393,GENERanno,MetaProdigal
+34,Haloferax_volcanii_plasmid_4,387,445597,bp_precision,0.8076114679548593,0.8332691212917546,0.8277200953793582,0.8340867501054274,0.823026797056683,0.820619072901424,plasmid,0.8395053298433292,GENERanno,MetaGeneMark2
+35,Haloferax_volcanii_plasmid_4,387,445597,bp_sensitivity,0.9856170485887472,0.975599027821103,0.9893513645738188,0.980951397787687,0.9872306142097008,0.8532912025888864,plasmid,0.9932831684234856,GENERanno,Prodigal
+36,Methanocaldococcus_jannaschii_plasmid_1,29,33286,exact_match,0.7931034482758621,0.8620689655172413,0.7931034482758621,0.7931034482758621,0.7586206896551724,0.5862068965517241,plasmid,0.8620689655172413,GeneMarkS2,GENERanno
+37,Methanocaldococcus_jannaschii_plasmid_1,29,33286,acc_end,0.8275862068965517,0.8620689655172413,0.7931034482758621,0.8275862068965517,0.7931034482758621,0.6896551724137931,plasmid,0.8620689655172413,GeneMarkS2,GENERanno
+38,Methanocaldococcus_jannaschii_plasmid_1,29,33286,acc_start,0.896551724137931,0.896551724137931,0.896551724137931,0.8620689655172413,0.8620689655172413,0.8275862068965517,plasmid,0.896551724137931,Glimmer3,GeneMarkS2
+39,Methanocaldococcus_jannaschii_plasmid_1,29,33286,acc_boundary,0.8275862068965517,0.8620689655172413,0.7931034482758621,0.7931034482758621,0.7586206896551724,0.6551724137931034,plasmid,0.8620689655172413,GeneMarkS2,GENERanno
+40,Methanocaldococcus_jannaschii_plasmid_1,29,33286,bp_precision,0.7093235831809872,0.7313701522391377,0.7218249616143891,0.7300135126154664,0.7204937621960578,0.746047479803737,plasmid,0.7306193828308319,GeneLM,GeneMarkS2
+41,Methanocaldococcus_jannaschii_plasmid_1,29,33286,bp_sensitivity,0.9908069458631256,0.988643874301508,0.988643874301508,0.9900558793486752,0.9872318692543413,0.904464339361894,plasmid,0.991558012377576,GENERanno,Glimmer3
+42,Methanocaldococcus_jannaschii_plasmid_2,6,8766,exact_match,0.3333333333333333,0.6666666666666666,0.5,0.6666666666666666,0.5,0.5,plasmid,0.5,GeneMarkS2,MetaGeneMark2
+43,Methanocaldococcus_jannaschii_plasmid_2,6,8766,acc_end,0.5,0.6666666666666666,0.6666666666666666,0.6666666666666666,0.6666666666666666,0.5,plasmid,0.6666666666666666,GeneMarkS2,Prodigal
+44,Methanocaldococcus_jannaschii_plasmid_2,6,8766,acc_start,0.3333333333333333,0.8333333333333334,0.5,0.8333333333333334,0.6666666666666666,0.6666666666666666,plasmid,0.5,GeneMarkS2,MetaGeneMark2
+45,Methanocaldococcus_jannaschii_plasmid_2,6,8766,acc_boundary,0.3333333333333333,0.6666666666666666,0.5,0.6666666666666666,0.5,0.5,plasmid,0.5,GeneMarkS2,MetaGeneMark2
+46,Methanocaldococcus_jannaschii_plasmid_2,6,8766,bp_precision,0.5823583743842364,0.6187127024722933,0.6153465696318802,0.6186314218716692,0.609151973131822,0.6436174406686115,plasmid,0.6211397189929392,GeneLM,GENERanno
+47,Methanocaldococcus_jannaschii_plasmid_2,6,8766,bp_sensitivity,0.8631074606433949,0.9934976043805612,0.9934976043805612,0.9931553730321696,0.9931553730321696,0.931211498973306,plasmid,0.9934976043805612,GeneMarkS2,Prodigal
+48,Methanosaeta_concilii_plasmid_1,4,1842,exact_match,0.5,0.5,0.5,0.5,0.5,0.5,plasmid,0.5,Glimmer3,GeneMarkS2
+49,Methanosaeta_concilii_plasmid_1,4,1842,acc_end,0.75,0.75,0.75,0.75,0.75,0.5,plasmid,0.75,Glimmer3,GeneMarkS2
+50,Methanosaeta_concilii_plasmid_1,4,1842,acc_start,0.75,0.75,0.75,0.75,0.75,0.75,plasmid,0.75,Glimmer3,GeneMarkS2
+51,Methanosaeta_concilii_plasmid_1,4,1842,acc_boundary,0.5,0.5,0.5,0.5,0.5,0.5,plasmid,0.5,Glimmer3,GeneMarkS2
+52,Methanosaeta_concilii_plasmid_1,4,1842,bp_precision,0.1284877232142857,0.1501344852881245,0.1558111994586364,0.1482494969818913,0.1447885552586071,0.1428851047171657,plasmid,0.152521321520245,Prodigal,GENERanno
+53,Methanosaeta_concilii_plasmid_1,4,1842,bp_sensitivity,1.0,1.0,1.0,1.0,1.0,0.7926167209554832,plasmid,1.0,Glimmer3,GeneMarkS2
+54,Natronomonas_pharaonis_plasmid_1,3,1614,exact_match,0.0,0.6666666666666666,0.3333333333333333,0.3333333333333333,0.3333333333333333,0.3333333333333333,plasmid,0.0,GeneMarkS2,Prodigal
+55,Natronomonas_pharaonis_plasmid_1,3,1614,acc_end,0.0,0.6666666666666666,0.3333333333333333,0.3333333333333333,0.3333333333333333,0.3333333333333333,plasmid,0.0,GeneMarkS2,Prodigal
+56,Natronomonas_pharaonis_plasmid_1,3,1614,acc_start,0.3333333333333333,0.6666666666666666,1.0,1.0,1.0,0.6666666666666666,plasmid,0.6666666666666666,Prodigal,MetaProdigal
+57,Natronomonas_pharaonis_plasmid_1,3,1614,acc_boundary,0.0,0.6666666666666666,0.3333333333333333,0.3333333333333333,0.3333333333333333,0.3333333333333333,plasmid,0.0,GeneMarkS2,Prodigal
+58,Natronomonas_pharaonis_plasmid_1,3,1614,bp_precision,0.0618422323066525,0.063712477026751,0.0796879628715315,0.0802567419643745,0.0799603666088679,0.0689845779669448,plasmid,0.0733648218502926,MetaGeneMark2,MetaProdigal
+59,Natronomonas_pharaonis_plasmid_1,3,1614,bp_sensitivity,0.7936802973977695,0.7732342007434945,1.0,0.9993804213135068,1.0,0.7732342007434945,plasmid,0.8853779429987608,Prodigal,MetaProdigal
+60,Natronomonas_pharaonis_plasmid_2,77,89870,exact_match,0.5974025974025974,0.5454545454545454,0.7142857142857143,0.6883116883116883,0.7142857142857143,0.4415584415584415,plasmid,0.7012987012987013,Prodigal,MetaProdigal
+61,Natronomonas_pharaonis_plasmid_2,77,89870,acc_end,0.7922077922077922,0.7272727272727273,0.8311688311688312,0.8311688311688312,0.8311688311688312,0.6883116883116883,plasmid,0.8051948051948052,Prodigal,MetaProdigal
+62,Natronomonas_pharaonis_plasmid_2,77,89870,acc_start,0.7012987012987013,0.7532467532467533,0.8051948051948052,0.7922077922077922,0.8051948051948052,0.6233766233766234,plasmid,0.8571428571428571,GENERanno,MetaProdigal
+63,Natronomonas_pharaonis_plasmid_2,77,89870,acc_boundary,0.5974025974025974,0.5584415584415584,0.7142857142857143,0.7142857142857143,0.7142857142857143,0.4415584415584415,plasmid,0.7142857142857143,Prodigal,MetaProdigal
+64,Natronomonas_pharaonis_plasmid_2,77,89870,bp_precision,0.8042365562071003,0.8453289818754006,0.8103419761480365,0.8408073674667176,0.8115829973675006,0.8205001787232994,plasmid,0.8413173935642395,GeneMarkS2,GENERanno
+65,Natronomonas_pharaonis_plasmid_2,77,89870,bp_sensitivity,0.9843329253365972,0.9683987982641592,0.9813730944697896,0.9803493935684878,0.9811060420607544,0.7407143651941693,plasmid,0.9905864025815068,GENERanno,Glimmer3
+66,Halobacterium_salinarum_plasmid_1,97,109026,exact_match,0.5979381443298969,0.6701030927835051,0.7422680412371134,0.6494845360824743,0.7010309278350515,0.5257731958762887,plasmid,0.711340206185567,Prodigal,GENERanno
+67,Halobacterium_salinarum_plasmid_1,97,109026,acc_end,0.8041237113402062,0.865979381443299,0.8865979381443299,0.8247422680412371,0.8556701030927835,0.7835051546391752,plasmid,0.8556701030927835,Prodigal,GeneMarkS2
+68,Halobacterium_salinarum_plasmid_1,97,109026,acc_start,0.7422680412371134,0.7422680412371134,0.8144329896907216,0.7731958762886598,0.8041237113402062,0.6804123711340206,plasmid,0.8144329896907216,Prodigal,GENERanno
+69,Halobacterium_salinarum_plasmid_1,97,109026,acc_boundary,0.6082474226804123,0.6701030927835051,0.7422680412371134,0.6494845360824743,0.7010309278350515,0.5257731958762887,plasmid,0.711340206185567,Prodigal,GENERanno
+70,Halobacterium_salinarum_plasmid_1,97,109026,bp_precision,0.8437726913970008,0.8584470838503812,0.8438671035920915,0.8509433962264151,0.8427019958813903,0.8565715289022415,plasmid,0.8560987261146497,GeneMarkS2,GeneLM
+71,Halobacterium_salinarum_plasmid_1,97,109026,bp_sensitivity,0.9805550969493516,0.977152238915488,0.9873057802725956,0.9762441986315192,0.9871406820391466,0.8054409040045494,plasmid,0.986241813879258,Prodigal,MetaProdigal
+72,Halobacterium_salinarum_plasmid_2,55,63643,exact_match,0.6181818181818182,0.6363636363636364,0.6363636363636364,0.6727272727272727,0.6363636363636364,0.509090909090909,plasmid,0.6909090909090909,GENERanno,MetaGeneMark2
+73,Halobacterium_salinarum_plasmid_2,55,63643,acc_end,0.7818181818181819,0.8,0.7818181818181819,0.8,0.7818181818181819,0.7272727272727273,plasmid,0.8181818181818182,GENERanno,MetaGeneMark2
+74,Halobacterium_salinarum_plasmid_2,55,63643,acc_start,0.7090909090909091,0.7090909090909091,0.7818181818181819,0.7818181818181819,0.7636363636363637,0.6363636363636364,plasmid,0.8,GENERanno,MetaGeneMark2
+75,Halobacterium_salinarum_plasmid_2,55,63643,acc_boundary,0.6181818181818182,0.6363636363636364,0.6363636363636364,0.6727272727272727,0.6363636363636364,0.509090909090909,plasmid,0.6909090909090909,GENERanno,MetaGeneMark2
+76,Halobacterium_salinarum_plasmid_2,55,63643,bp_precision,0.7173056994818653,0.7438024466080025,0.7198507462686567,0.7381364738482854,0.7173163100409155,0.7462665226232842,plasmid,0.7413662687625576,GeneLM,GeneMarkS2
+77,Halobacterium_salinarum_plasmid_2,55,63643,bp_sensitivity,0.9788664896375092,0.9735241896202254,0.9851672611284824,0.9710258787297896,0.9834231572993102,0.7380701726819917,plasmid,0.9856072152475528,GENERanno,Prodigal
+78,Natronomonas_pharaonis_plasmid_1,3,1614,exact_match,0.0,0.6666666666666666,0.3333333333333333,0.3333333333333333,0.3333333333333333,0.3333333333333333,plasmid,0.0,GeneMarkS2,Prodigal
+79,Natronomonas_pharaonis_plasmid_1,3,1614,acc_end,0.0,0.6666666666666666,0.3333333333333333,0.3333333333333333,0.3333333333333333,0.3333333333333333,plasmid,0.0,GeneMarkS2,Prodigal
+80,Natronomonas_pharaonis_plasmid_1,3,1614,acc_start,0.3333333333333333,0.6666666666666666,1.0,1.0,1.0,0.6666666666666666,plasmid,0.6666666666666666,Prodigal,MetaProdigal
+81,Natronomonas_pharaonis_plasmid_1,3,1614,acc_boundary,0.0,0.6666666666666666,0.3333333333333333,0.3333333333333333,0.3333333333333333,0.3333333333333333,plasmid,0.0,GeneMarkS2,Prodigal
+82,Natronomonas_pharaonis_plasmid_1,3,1614,bp_precision,0.0618422323066525,0.0641117846501592,0.0796879628715315,0.0802567419643745,0.0799603666088679,0.0689845779669448,plasmid,0.0733648218502926,MetaGeneMark2,MetaProdigal
+83,Natronomonas_pharaonis_plasmid_1,3,1614,bp_sensitivity,0.7936802973977695,0.7732342007434945,1.0,0.9993804213135068,1.0,0.7732342007434945,plasmid,0.8853779429987608,Prodigal,MetaProdigal
+84,Natronomonas_pharaonis_plasmid_2,77,89870,exact_match,0.5974025974025974,0.5974025974025974,0.7142857142857143,0.7012987012987013,0.7142857142857143,0.4415584415584415,plasmid,0.7012987012987013,Prodigal,MetaProdigal
+85,Natronomonas_pharaonis_plasmid_2,77,89870,acc_end,0.7922077922077922,0.7402597402597403,0.8311688311688312,0.8311688311688312,0.8311688311688312,0.6883116883116883,plasmid,0.8051948051948052,Prodigal,MetaProdigal
+86,Natronomonas_pharaonis_plasmid_2,77,89870,acc_start,0.7012987012987013,0.7922077922077922,0.8051948051948052,0.8051948051948052,0.8051948051948052,0.6233766233766234,plasmid,0.8571428571428571,GENERanno,MetaGeneMark2
+87,Natronomonas_pharaonis_plasmid_2,77,89870,acc_boundary,0.5974025974025974,0.6103896103896104,0.7142857142857143,0.7272727272727273,0.7142857142857143,0.4415584415584415,plasmid,0.7142857142857143,MetaGeneMark2,MetaProdigal
+88,Natronomonas_pharaonis_plasmid_2,77,89870,bp_precision,0.8042365562071003,0.8455282982422252,0.8103419761480365,0.8408574863096033,0.8115829973675006,0.8205001787232994,plasmid,0.8413173935642395,GeneMarkS2,GENERanno
+89,Natronomonas_pharaonis_plasmid_2,77,89870,bp_sensitivity,0.9843329253365972,0.9741404250584176,0.9813730944697896,0.9807165906309112,0.9811060420607544,0.7407143651941693,plasmid,0.9905864025815068,GENERanno,Glimmer3

results/archaea_plasmid_metrics_summary.csv

@@ -0,0 +1,7 @@
+,metric,Glimmer3,GeneMarkS2,Prodigal,MetaGeneMark2,MetaProdigal,GeneLM,GENERanno,best_model,second_best_model
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+1,acc_end,0.7976588628762542,0.8219063545150501,0.8386287625418061,0.8336120401337793,0.8327759197324415,0.7449832775919732,0.8478260869565217,GENERanno,Prodigal
+2,acc_boundary,0.6479933110367893,0.6839464882943144,0.7316053511705686,0.7207357859531772,0.7190635451505016,0.5543478260869565,0.7575250836120402,GENERanno,Prodigal
+3,exact_match,0.6404682274247492,0.6780936454849499,0.7282608695652174,0.7123745819397993,0.7148829431438127,0.5493311036789298,0.7491638795986622,GENERanno,Prodigal
+4,bp_precision,0.818436962345191,0.841437988239289,0.8291401464051952,0.8390970545826072,0.827409804721539,0.8337190333222784,0.8435302802789316,GENERanno,GeneMarkS2
+5,bp_sensitivity,0.9835304768673638,0.9785031757313208,0.9884252208346024,0.9819933777822905,0.9871024695118512,0.8370879446305886,0.9920275324059972,GENERanno,Prodigal

results/bacteria_genome_metrics_details.csv

@@ -0,0 +1,199 @@
+,species_name,cds_gene,cds_bp,metric,Glimmer3,GeneMarkS2,Prodigal,MetaGeneMark2,MetaProdigal,GeneLM,type,GENERanno,best_model,second_best_model
+0,Bacillus_anthracis_genome_0,4226,4170839,exact_match,0.836251774727875,0.8220539517274018,0.8603880738286797,0.7782773308092759,0.7489351632749645,0.840511121628017,genome,0.9403691433980124,GENERanno,Prodigal
+1,Bacillus_anthracis_genome_0,4226,4170839,acc_end,0.921675343114056,0.9065309985802176,0.930430667297681,0.8873639375295788,0.8670137245622338,0.913156649313772,genome,0.969947941315665,GENERanno,Prodigal
+2,Bacillus_anthracis_genome_0,4226,4170839,acc_start,0.9188357785139613,0.9074775201135826,0.9285376242309512,0.8788452437292948,0.871509701845717,0.9133932796971131,genome,0.967818267865594,GENERanno,Prodigal
+3,Bacillus_anthracis_genome_0,4226,4170839,acc_boundary,0.8599148130619971,0.8431140558447705,0.8788452437292948,0.7969711310932324,0.7659725508755324,0.8582584003786086,genome,0.9413156649313772,GENERanno,Prodigal
+4,Bacillus_anthracis_genome_0,4226,4170839,bp_precision,0.9373533393732876,0.9428413947621758,0.9393690616429322,0.9407117912335698,0.9335343767221176,0.9434315886609658,genome,0.9407187844842566,GeneLM,GeneMarkS2
+5,Bacillus_anthracis_genome_0,4226,4170839,bp_sensitivity,0.9875228940747892,0.9855369627070236,0.9903642888157514,0.9842602411649072,0.988992622347686,0.9564682309722335,genome,0.9994806800262488,GENERanno,Prodigal
+6,Bacillus_subtilis_genome_0,3141,3450749,exact_match,0.8328557784145176,0.8424068767908309,0.8704234320280165,0.7882839859917223,0.813435211716014,0.8382680674944285,genome,0.91849729385546,GENERanno,Prodigal
+7,Bacillus_subtilis_genome_0,3141,3450749,acc_end,0.9032155364533588,0.9079910856415154,0.9290035020694046,0.8812480101878383,0.8971665074816937,0.9105380452085324,genome,0.9557465775230818,GENERanno,Prodigal
+8,Bacillus_subtilis_genome_0,3141,3450749,acc_start,0.9146768545049349,0.9169054441260746,0.9277300222858962,0.8930276981852913,0.8974848774275709,0.9178605539637058,genome,0.9586119070359758,GENERanno,Prodigal
+9,Bacillus_subtilis_genome_0,3141,3450749,acc_boundary,0.8363578478191659,0.8446354664119707,0.8723336517032793,0.7936962750716332,0.8175740210124164,0.8468640560331104,genome,0.9194524036930912,GENERanno,Prodigal
+10,Bacillus_subtilis_genome_0,3141,3450749,bp_precision,0.920837844299795,0.9286205149827144,0.9280676530304944,0.9264295854386532,0.92451032394897,0.929925839337728,genome,0.9261681738360974,GeneLM,GeneMarkS2
+11,Bacillus_subtilis_genome_0,3141,3450749,bp_sensitivity,0.9933310130641204,0.9950393378365104,0.9966444966005932,0.9941838713856036,0.994529593430296,0.9562715225013468,genome,0.9991161339175928,GENERanno,Prodigal
+12,Campylobacter_jejuni_genome_0,937,1368183,exact_match,0.8132337246531484,0.8143009605122732,0.823906083244397,0.7854855923159018,0.8025613660618997,0.7908217716115261,genome,0.8505869797225186,GENERanno,Prodigal
+13,Campylobacter_jejuni_genome_0,937,1368183,acc_end,0.8954108858057631,0.8922091782283885,0.8996798292422625,0.87940234791889,0.8932764140875133,0.8783351120597652,genome,0.9156883671291356,GENERanno,Prodigal
+14,Campylobacter_jejuni_genome_0,937,1368183,acc_start,0.9210245464247598,0.911419423692636,0.9178228388473852,0.8996798292422625,0.9028815368196372,0.9018143009605124,genome,0.9306296691568836,GENERanno,Glimmer3
+15,Campylobacter_jejuni_genome_0,937,1368183,acc_boundary,0.8196371398078975,0.816435432230523,0.8260405549626467,0.7929562433297759,0.807897545357524,0.8068303094983992,genome,0.8505869797225186,GENERanno,Prodigal
+16,Campylobacter_jejuni_genome_0,937,1368183,bp_precision,0.8858848903466863,0.8879637323014229,0.8883983025872988,0.886876166321415,0.8859696910471127,0.8979896850384055,genome,0.8835903160538617,GeneLM,Prodigal
+17,Campylobacter_jejuni_genome_0,937,1368183,bp_sensitivity,0.996094820648992,0.9982531576550796,0.9981215963069268,0.9972722947149614,0.9972774109896118,0.9643709942310348,genome,0.9996952162101124,GENERanno,GeneMarkS2
+18,Carboxydothermus_hydrogenoformans_genome_0,1782,2027031,exact_match,0.8518518518518519,0.8591470258136925,0.8625140291806959,0.8047138047138047,0.8327721661054994,0.8468013468013468,genome,0.8967452300785634,GENERanno,Prodigal
+19,Carboxydothermus_hydrogenoformans_genome_0,1782,2027031,acc_end,0.925364758698092,0.9214365881032548,0.9219977553310886,0.8945005611672279,0.9113355780022446,0.9208754208754208,genome,0.9427609427609428,GENERanno,Glimmer3
+20,Carboxydothermus_hydrogenoformans_genome_0,1782,2027031,acc_start,0.9242424242424242,0.9281705948372616,0.9326599326599326,0.8995510662177328,0.914141414141414,0.924803591470258,genome,0.9517396184062852,GENERanno,Prodigal
+21,Carboxydothermus_hydrogenoformans_genome_0,1782,2027031,acc_boundary,0.8602693602693603,0.8664421997755332,0.867003367003367,0.8131313131313131,0.8395061728395061,0.8580246913580247,genome,0.898989898989899,GENERanno,Prodigal
+22,Carboxydothermus_hydrogenoformans_genome_0,1782,2027031,bp_precision,0.9211598418579952,0.9323677391537024,0.9313646614081508,0.9287389328914328,0.9267497898815396,0.9353680086784192,genome,0.932501997105004,GeneLM,GENERanno
+23,Carboxydothermus_hydrogenoformans_genome_0,1782,2027031,bp_sensitivity,0.9961071142967226,0.9952995292129228,0.9971440989308994,0.9937006390134142,0.9960158478089384,0.9630479257593988,genome,0.9985678561403352,GENERanno,Prodigal
+24,Caulobacter_crescentus_genome_0,2712,3375380,exact_match,0.7230825958702065,0.7599557522123894,0.7617994100294986,0.7426253687315634,0.7422566371681416,0.75,genome,0.7761799410029498,GENERanno,Prodigal
+25,Caulobacter_crescentus_genome_0,2712,3375380,acc_end,0.8499262536873157,0.8735250737463127,0.8709439528023599,0.8676253687315634,0.8632005899705014,0.8606194690265486,genome,0.8808997050147492,GENERanno,GeneMarkS2
+26,Caulobacter_crescentus_genome_0,2712,3375380,acc_start,0.8679941002949852,0.8808997050147492,0.8823746312684366,0.8687315634218289,0.8698377581120944,0.8720501474926253,genome,0.8908554572271387,GENERanno,Prodigal
+27,Caulobacter_crescentus_genome_0,2712,3375380,acc_boundary,0.7330383480825958,0.7691740412979351,0.7688053097345132,0.7529498525073747,0.75,0.7592182890855457,genome,0.7850294985250738,GENERanno,GeneMarkS2
+28,Caulobacter_crescentus_genome_0,2712,3375380,bp_precision,0.9271394775109786,0.9255306182856546,0.9284088258734986,0.9245211326800608,0.9268824411196632,0.9256010393584964,genome,0.9289398255392628,GENERanno,Prodigal
+29,Caulobacter_crescentus_genome_0,2712,3375380,bp_sensitivity,0.98713389307278,0.9921336264361346,0.9894450402621334,0.9918948385070718,0.9906656435719832,0.962688645426589,genome,0.9930944071482322,GENERanno,GeneMarkS2
+30,Chlorobium_tepidum_genome_0,1604,1792056,exact_match,0.7057356608478803,0.7263092269326683,0.8048628428927681,0.7786783042394015,0.7849127182044888,0.6895261845386533,genome,0.8628428927680798,GENERanno,Prodigal
+31,Chlorobium_tepidum_genome_0,1604,1792056,acc_end,0.8391521197007481,0.850997506234414,0.8915211970074813,0.8765586034912718,0.8753117206982544,0.8435162094763092,genome,0.919576059850374,GENERanno,Prodigal
+32,Chlorobium_tepidum_genome_0,1604,1792056,acc_start,0.8485037406483791,0.8534912718204489,0.8971321695760599,0.8809226932668329,0.89214463840399,0.8254364089775561,genome,0.9351620947630924,GENERanno,Prodigal
+33,Chlorobium_tepidum_genome_0,1604,1792056,acc_boundary,0.713216957605985,0.7288029925187033,0.8092269326683291,0.7805486284289277,0.7899002493765586,0.7019950124688279,genome,0.8672069825436409,GENERanno,Prodigal
+34,Chlorobium_tepidum_genome_0,1604,1792056,bp_precision,0.9345181670802948,0.9359950020026728,0.9455124302775711,0.9355727011071662,0.9442577434269164,0.9459948801405836,genome,0.9458946193304164,GeneLM,GENERanno
+35,Chlorobium_tepidum_genome_0,1604,1792056,bp_sensitivity,0.9852699915627636,0.9923540335793076,0.9923618458351748,0.9939940492931024,0.9913864298883516,0.881959045922672,genome,0.9966831393661804,GENERanno,MetaGeneMark2
+36,Clostridium_perfringens_genome_0,2324,2538332,exact_match,0.9427710843373494,0.9268502581755592,0.942340791738382,0.8954388984509466,0.8803786574870912,0.9333046471600688,genome,0.9518072289156626,GENERanno,Glimmer3
+37,Clostridium_perfringens_genome_0,2324,2538332,acc_end,0.9728915662650602,0.9647160068846816,0.9737521514629948,0.953528399311532,0.939328743545611,0.9685886402753872,genome,0.976764199655766,GENERanno,Prodigal
+38,Clostridium_perfringens_genome_0,2324,2538332,acc_start,0.9664371772805508,0.9569707401032702,0.965576592082616,0.939328743545611,0.937607573149742,0.9556798623063684,genome,0.9728915662650602,GENERanno,Glimmer3
+39,Clostridium_perfringens_genome_0,2324,2538332,acc_boundary,0.943631669535284,0.9285714285714286,0.9427710843373494,0.8984509466437177,0.882960413080895,0.9345955249569708,genome,0.9518072289156626,GENERanno,Glimmer3
+40,Clostridium_perfringens_genome_0,2324,2538332,bp_precision,0.9181958418045644,0.92211803274627,0.92035153341928,0.9204688700887348,0.91497015463519,0.9201833831577048,genome,0.9217556766437208,GeneMarkS2,GENERanno
+41,Clostridium_perfringens_genome_0,2324,2538332,bp_sensitivity,0.9970736688502528,0.9970791842832222,0.9984217982517654,0.9964886389960022,0.9977327630900922,0.984059610799533,genome,0.9992420219262098,GENERanno,Prodigal
+42,Colwellia_psychrerythraea_genome_0,3567,4195566,exact_match,0.8460891505466779,0.872161480235492,0.8772077375946173,0.8376787216148024,0.7860947574992991,0.8376787216148024,genome,0.895991028875806,GENERanno,Prodigal
+43,Colwellia_psychrerythraea_genome_0,3567,4195566,acc_end,0.9220633585646202,0.9321558732828708,0.936080740117746,0.9167367535744324,0.8903840762545556,0.9130922343706196,genome,0.9433697785253714,GENERanno,Prodigal
+44,Colwellia_psychrerythraea_genome_0,3567,4195566,acc_start,0.92094196804037,0.9304737874964956,0.936080740117746,0.914493972525932,0.8920661620409307,0.9114101485842444,genome,0.9472946453602468,GENERanno,Prodigal
+45,Colwellia_psychrerythraea_genome_0,3567,4195566,acc_boundary,0.8511354079058032,0.8730025231286795,0.8786094757499299,0.8413232408186151,0.7908606672273619,0.8416035884496776,genome,0.8973927670311186,GENERanno,Prodigal
+46,Colwellia_psychrerythraea_genome_0,3567,4195566,bp_precision,0.9226944291998356,0.9282474708941229,0.9259357238411392,0.9265473019679168,0.9231663818538716,0.9268025061704254,genome,0.9285381665337926,GENERanno,GeneMarkS2
+47,Colwellia_psychrerythraea_genome_0,3567,4195566,bp_sensitivity,0.9946043036863202,0.9972442335551388,0.9977552492321656,0.996132107086386,0.9959533469381724,0.955677732158188,genome,0.9985236795226198,GENERanno,Prodigal
+48,Dehalococcoides_mccartyi_genome_0,1061,1209715,exact_match,0.8039585296889726,0.822808671065033,0.8595664467483506,0.7945334590009425,0.8067860508953817,0.8086710650329878,genome,0.8850141376060321,GENERanno,Prodigal
+49,Dehalococcoides_mccartyi_genome_0,1061,1209715,acc_end,0.8963242224316682,0.9104618284637136,0.9264844486333648,0.8925541941564562,0.8944392082940622,0.9038642789820924,genome,0.941564561734213,GENERanno,Prodigal
+50,Dehalococcoides_mccartyi_genome_0,1061,1209715,acc_start,0.8868991517436381,0.9010367577756834,0.9227144203581528,0.8906691800188501,0.9010367577756834,0.8925541941564562,genome,0.94062205466541,GENERanno,Prodigal
+51,Dehalococcoides_mccartyi_genome_0,1061,1209715,acc_boundary,0.8105560791705938,0.8331762488218661,0.8623939679547596,0.8049010367577757,0.8143261074458058,0.8180961357210179,genome,0.8878416588124411,GENERanno,Prodigal
+52,Dehalococcoides_mccartyi_genome_0,1061,1209715,bp_precision,0.9013392617705692,0.9043084105795164,0.9046022679931032,0.9026357674203344,0.9029124389468536,0.902123602528701,genome,0.906563466933958,GENERanno,Prodigal
+53,Dehalococcoides_mccartyi_genome_0,1061,1209715,bp_sensitivity,0.9863339712246272,0.98950909925065,0.9961875317740128,0.9915178368458688,0.9931413597417572,0.942523652265203,genome,0.9973663218196022,GENERanno,Prodigal
+54,Deinococcus_deserti_genome_0,1838,2201441,exact_match,0.6588683351468988,0.6947769314472253,0.7431991294885746,0.7714907508161044,0.676278563656148,0.779107725788901,genome,0.8394994559303591,GENERanno,GeneLM
+55,Deinococcus_deserti_genome_0,1838,2201441,acc_end,0.8204570184983678,0.8443960826985855,0.8618063112078346,0.8797606093579978,0.8258977149075082,0.8895538628944505,genome,0.9189336235038084,GENERanno,GeneLM
+56,Deinococcus_deserti_genome_0,1838,2201441,acc_start,0.8269858541893362,0.8454842219804135,0.8694232861806311,0.8895538628944505,0.8302502720348205,0.8830250272034821,genome,0.9167573449401524,GENERanno,MetaGeneMark2
+57,Deinococcus_deserti_genome_0,1838,2201441,acc_boundary,0.6659412404787813,0.7100108813928183,0.7470076169749728,0.7850924918389554,0.6833514689880305,0.7899891186071817,genome,0.8427638737758433,GENERanno,GeneLM
+58,Deinococcus_deserti_genome_0,1838,2201441,bp_precision,0.8865395379988642,0.8949237681348573,0.8858184617238063,0.895963495097737,0.8824775625131602,0.8910826474828213,genome,0.8941747604426804,MetaGeneMark2,GeneMarkS2
+59,Deinococcus_deserti_genome_0,1838,2201441,bp_sensitivity,0.9884993511068432,0.9842457735637704,0.9953144326829564,0.9900224443898338,0.9918644197141782,0.952691441651173,genome,0.9979899529444576,GENERanno,Prodigal
+60,Escherichia_coli_genome_0,3662,4005912,exact_match,0.804205352266521,0.849808847624249,0.878208629164391,0.7919169852539596,0.8574549426542872,0.8612779901693064,genome,0.9388312397596942,GENERanno,Prodigal
+61,Escherichia_coli_genome_0,3662,4005912,acc_end,0.8760240305843802,0.902785363189514,0.9180775532495904,0.8727471327143638,0.909612233752048,0.903604587657018,genome,0.9631348989623156,GENERanno,Prodigal
+62,Escherichia_coli_genome_0,3662,4005912,acc_start,0.883397050791917,0.903604587657018,0.9232659748771164,0.8765701802293828,0.9145275805570726,0.9109776078645548,genome,0.9647733478973238,GENERanno,Prodigal
+63,Escherichia_coli_genome_0,3662,4005912,acc_boundary,0.8104860731840524,0.8533588203167668,0.8825778263244128,0.7992900054614964,0.86400873839432,0.8648279628618242,genome,0.9393773894046968,GENERanno,Prodigal
+64,Escherichia_coli_genome_0,3662,4005912,bp_precision,0.971728548516736,0.9773211713448876,0.9778135732229304,0.9742378017698706,0.9768097394572802,0.98278298953907,genome,0.976939336034288,GeneLM,Prodigal
+65,Escherichia_coli_genome_0,3662,4005912,bp_sensitivity,0.9841616590678977,0.9913125899919918,0.992557500014978,0.989992541024366,0.9923071200765268,0.970644886857225,genome,0.9980266665867848,GENERanno,Prodigal
+66,Geobacter_sulfurreducens_genome_0,2609,3269293,exact_match,0.8217707934074358,0.8623993867382139,0.8658489842851668,0.8098888463012649,0.8137217324645458,0.8367190494442315,genome,0.8896128784975086,GENERanno,Prodigal
+67,Geobacter_sulfurreducens_genome_0,2609,3269293,acc_end,0.9099271751628976,0.9241088539670372,0.9252587198160216,0.8980452280567267,0.9011115369873516,0.915293215791491,genome,0.9409735530854734,GENERanno,Prodigal
+68,Geobacter_sulfurreducens_genome_0,2609,3269293,acc_start,0.9080107320812572,0.9333077807589114,0.935224223840552,0.9003449597546953,0.9049444231506324,0.9172096588731314,genome,0.9455730164814105,GENERanno,Prodigal
+69,Geobacter_sulfurreducens_genome_0,2609,3269293,acc_boundary,0.8321195860482944,0.8708317362974319,0.8704484476811039,0.8179379072441548,0.8210042161747796,0.8470678420850901,genome,0.8938290532771177,GENERanno,GeneMarkS2
+70,Geobacter_sulfurreducens_genome_0,2609,3269293,bp_precision,0.9364002564191414,0.9396112694279136,0.9409474597835772,0.9388898537133198,0.9362024515555024,0.941742755451648,genome,0.9424437078958974,GENERanno,GeneLM
+71,Geobacter_sulfurreducens_genome_0,2609,3269293,bp_sensitivity,0.9919052834970742,0.9925081661386728,0.9964701848381288,0.9921817958806384,0.9938995984758784,0.9526653010299168,genome,0.9981965519762224,GENERanno,Prodigal
+72,Haemophilus_influenzae_genome_0,1484,1627768,exact_match,0.8685983827493261,0.8672506738544474,0.9036388140161724,0.8369272237196765,0.8645552560646901,0.8773584905660378,genome,0.9252021563342318,GENERanno,Prodigal
+73,Haemophilus_influenzae_genome_0,1484,1627768,acc_end,0.9245283018867924,0.9245283018867924,0.9474393530997304,0.908355795148248,0.9191374663072776,0.9285714285714286,genome,0.9602425876010782,GENERanno,Prodigal
+74,Haemophilus_influenzae_genome_0,1484,1627768,acc_start,0.9319407008086252,0.9245283018867924,0.942722371967655,0.9090296495956872,0.9319407008086252,0.9231805929919138,genome,0.956199460916442,GENERanno,Prodigal
+75,Haemophilus_influenzae_genome_0,1484,1627768,acc_boundary,0.876010781671159,0.8733153638814016,0.910377358490566,0.8463611859838275,0.8712938005390836,0.8827493261455526,genome,0.9265498652291104,GENERanno,Prodigal
+76,Haemophilus_influenzae_genome_0,1484,1627768,bp_precision,0.9678617782022874,0.9703220426430534,0.971948832208085,0.9683230662451946,0.9687701400851484,0.9711114966601812,genome,0.9715949459368212,Prodigal,GENERanno
+77,Haemophilus_influenzae_genome_0,1484,1627768,bp_sensitivity,0.9922912847531098,0.9936250129011014,0.9934523838778008,0.9925167468582746,0.9936403713551316,0.9628141111018278,genome,0.9988948056479792,GENERanno,MetaProdigal
+78,Helicobacter_pylori_genome_0,1087,1442613,exact_match,0.8040478380864765,0.766329346826127,0.8252069917203312,0.7442502299908004,0.7332106715731371,0.7479300827966882,genome,0.8472861085556578,GENERanno,Prodigal
+79,Helicobacter_pylori_genome_0,1087,1442613,acc_end,0.8923643054277829,0.8675252989880404,0.8951241950321988,0.859245630174793,0.8482060717571297,0.8666053357865685,genome,0.9126034958601656,GENERanno,Prodigal
+80,Helicobacter_pylori_genome_0,1087,1442613,acc_start,0.8978840846366145,0.8767249310027599,0.9116835326586936,0.860165593376265,0.8574057037718491,0.8739650413983441,genome,0.920883164673413,GENERanno,Prodigal
+81,Helicobacter_pylori_genome_0,1087,1442613,acc_boundary,0.812327506899724,0.7782888684452622,0.8353265869365225,0.7543698252069917,0.7451701931922723,0.7764489420423183,genome,0.8509659613615456,GENERanno,Prodigal
+82,Helicobacter_pylori_genome_0,1087,1442613,bp_precision,0.9206161655382384,0.9279850262106192,0.9269643954338196,0.9264863821446292,0.9253216959416022,0.9287040150370968,genome,0.925785718649223,GeneLM,GeneMarkS2
+83,Helicobacter_pylori_genome_0,1087,1442613,bp_sensitivity,0.9926917336804812,0.991505691408576,0.9934930573896118,0.9914599410930028,0.9897581679909996,0.9343247288080726,genome,0.9979765883157852,GENERanno,Prodigal
+84,Listeria_monocytogenes_genome_0,1599,1947108,exact_match,0.8642901813633521,0.8711694809255784,0.8861788617886179,0.8273921200750469,0.7842401500938087,0.8849280800500313,genome,0.9287054409005628,GENERanno,Prodigal
+85,Listeria_monocytogenes_genome_0,1599,1947108,acc_end,0.934959349593496,0.9324577861163228,0.9437148217636022,0.9099437148217636,0.8818011257035647,0.9424640400250156,genome,0.965603502188868,GENERanno,Prodigal
+86,Listeria_monocytogenes_genome_0,1599,1947108,acc_start,0.9280800500312696,0.9299562226391496,0.9362101313320824,0.9124452782989368,0.8893058161350844,0.9362101313320824,genome,0.9599749843652282,GENERanno,GeneLM
+87,Listeria_monocytogenes_genome_0,1599,1947108,acc_boundary,0.8717948717948718,0.8717948717948718,0.8874296435272045,0.8305190744215134,0.7848655409631019,0.8874296435272045,genome,0.9287054409005628,GENERanno,GeneLM
+88,Listeria_monocytogenes_genome_0,1599,1947108,bp_precision,0.7388937026879272,0.7406722713399191,0.7406349976261736,0.7397211910564507,0.7372806516532506,0.7424461101902495,genome,0.7403210590377659,GeneLM,GeneMarkS2
+89,Listeria_monocytogenes_genome_0,1599,1947108,bp_sensitivity,0.99679011128299,0.9987930818424042,0.999083255782422,0.9975116942665738,0.9977618087954032,0.9822814142821046,genome,0.9999137181912868,GENERanno,Prodigal
+90,Methylococcus_capsulatus_genome_0,2125,2753602,exact_match,0.7129411764705882,0.7854117647058824,0.8,0.780235294117647,0.776,0.7454117647058823,genome,0.8475294117647059,GENERanno,Prodigal
+91,Methylococcus_capsulatus_genome_0,2125,2753602,acc_end,0.8564705882352941,0.8936470588235295,0.904,0.8898823529411765,0.8903529411764706,0.8687058823529412,genome,0.9261176470588236,GENERanno,Prodigal
+92,Methylococcus_capsulatus_genome_0,2125,2753602,acc_start,0.8409411764705882,0.8790588235294118,0.8781176470588236,0.8748235294117647,0.8687058823529412,0.8489411764705882,genome,0.912,GENERanno,GeneMarkS2
+93,Methylococcus_capsulatus_genome_0,2125,2753602,acc_boundary,0.7275294117647059,0.7938823529411765,0.8051764705882353,0.7872941176470588,0.7835294117647059,0.7557647058823529,genome,0.8527058823529412,GENERanno,Prodigal
+94,Methylococcus_capsulatus_genome_0,2125,2753602,bp_precision,0.9024946616014832,0.9115643379878478,0.9104681494256126,0.9094911750448617,0.907219729378427,0.908992391846316,genome,0.9139001403449188,GENERanno,GeneMarkS2
+95,Methylococcus_capsulatus_genome_0,2125,2753602,bp_sensitivity,0.9870769268761426,0.9935448187501316,0.9931406209030936,0.994116796835563,0.992338398940733,0.9315187888445752,genome,0.996778038365748,GENERanno,MetaGeneMark2
+96,Mycobacterium_tuberculosis_genome_0,2340,3187135,exact_match,0.5944444444444444,0.6102564102564103,0.6854700854700855,0.6346153846153846,0.6474358974358975,0.6397435897435897,genome,0.805982905982906,GENERanno,Prodigal
+97,Mycobacterium_tuberculosis_genome_0,2340,3187135,acc_end,0.785042735042735,0.7931623931623931,0.8324786324786325,0.8136752136752137,0.8141025641025641,0.8034188034188035,genome,0.8995726495726496,GENERanno,Prodigal
+98,Mycobacterium_tuberculosis_genome_0,2340,3187135,acc_start,0.7957264957264957,0.8008547008547009,0.8341880341880342,0.805982905982906,0.8102564102564103,0.8111111111111111,genome,0.8965811965811966,GENERanno,Prodigal
+99,Mycobacterium_tuberculosis_genome_0,2340,3187135,acc_boundary,0.6128205128205129,0.6252136752136752,0.6944444444444444,0.6525641025641026,0.6615384615384615,0.6564102564102564,genome,0.8094017094017094,GENERanno,Prodigal
+100,Mycobacterium_tuberculosis_genome_0,2340,3187135,bp_precision,0.7837238099880743,0.7957419518955315,0.7893382869429099,0.7932114480376407,0.787652845647756,0.8022805343221685,genome,0.787030036897604,GeneLM,GeneMarkS2
+101,Mycobacterium_tuberculosis_genome_0,2340,3187135,bp_sensitivity,0.9786090015013484,0.9795308325502372,0.9890004659357072,0.9824867788782088,0.9835560777940062,0.911824569715434,genome,0.9952515346855404,GENERanno,Prodigal
+102,Neisseria_meningitidis_genome_0,1636,1701452,exact_match,0.6430317848410758,0.7885085574572127,0.8135696821515892,0.730440097799511,0.7597799511002445,0.7915647921760391,genome,0.8801955990220048,GENERanno,Prodigal
+103,Neisseria_meningitidis_genome_0,1636,1701452,acc_end,0.812958435207824,0.8899755501222494,0.8991442542787286,0.8606356968215159,0.8753056234718827,0.8832518337408313,genome,0.9394865525672372,GENERanno,Prodigal
+104,Neisseria_meningitidis_genome_0,1636,1701452,acc_start,0.789119804400978,0.8734718826405868,0.8887530562347188,0.8410757946210269,0.8563569682151589,0.8759168704156479,genome,0.9315403422982884,GENERanno,Prodigal
+105,Neisseria_meningitidis_genome_0,1636,1701452,acc_boundary,0.6540342298288508,0.7970660146699267,0.823960880195599,0.738997555012225,0.7720048899755502,0.8019559902200489,genome,0.882640586797066,GENERanno,Prodigal
+106,Neisseria_meningitidis_genome_0,1636,1701452,bp_precision,0.907028317794628,0.935514451548406,0.936808407726654,0.9295302644787068,0.9341532501847332,0.9444377512304468,genome,0.9384135422155792,GeneLM,GENERanno
+107,Neisseria_meningitidis_genome_0,1636,1701452,bp_sensitivity,0.9800446912401878,0.9888894896829296,0.9846566344510452,0.9872485383072812,0.980770541866594,0.9352817475897056,genome,0.998501280083129,GENERanno,GeneMarkS2
+108,Porphyromonas_gingivalis_genome_0,1603,1882710,exact_match,0.6662507797878977,0.6063630692451654,0.7504678727386151,0.7255146600124766,0.7199001871490954,0.5826575171553338,genome,0.8066126013724267,GENERanno,Prodigal
+109,Porphyromonas_gingivalis_genome_0,1603,1882710,acc_end,0.7953836556456644,0.7442295695570805,0.8315658140985652,0.8128509045539614,0.8103555832813475,0.7392389270118528,genome,0.8696194635059263,GENERanno,Prodigal
+110,Porphyromonas_gingivalis_genome_0,1603,1882710,acc_start,0.7872738615096694,0.7623206487835309,0.8296943231441049,0.8147223955084217,0.8103555832813475,0.7510917030567685,genome,0.860885839051778,GENERanno,Prodigal
+111,Porphyromonas_gingivalis_genome_0,1603,1882710,acc_boundary,0.6818465377417342,0.6219588271990019,0.7542108546475359,0.7348721147847785,0.7255146600124766,0.6038677479725515,genome,0.810979413599501,GENERanno,Prodigal
+112,Porphyromonas_gingivalis_genome_0,1603,1882710,bp_precision,0.9121351270185648,0.930828137210211,0.9209653072571988,0.9256881682438862,0.9227844290900996,0.9309066859593256,genome,0.9331571136616882,GENERanno,GeneLM
+113,Porphyromonas_gingivalis_genome_0,1603,1882710,bp_sensitivity,0.9776290559884422,0.971793850354011,0.9870893552379284,0.9796872593229972,0.9818394760743822,0.8358451381253619,genome,0.9919307806300492,GENERanno,Prodigal
+114,Pseudomonas_aeruginosa_genome_0,2893,3734215,exact_match,0.7870722433460076,0.8392671966816454,0.8586242654683719,0.811614241272036,0.8375388869685447,0.8447977877635672,genome,0.9018320082958866,GENERanno,Prodigal
+115,Pseudomonas_aeruginosa_genome_0,2893,3734215,acc_end,0.8835119253370204,0.9160041479433114,0.9287936398202558,0.9004493605254061,0.9142758382302107,0.9170411337711718,genome,0.9516073280331836,GENERanno,Prodigal
+116,Pseudomonas_aeruginosa_genome_0,2893,3734215,acc_start,0.8883511925337021,0.914621500172831,0.9184237815416524,0.8987210508123056,0.9108192188040096,0.9108192188040096,genome,0.9446940891807812,GENERanno,Prodigal
+117,Pseudomonas_aeruginosa_genome_0,2893,3734215,acc_boundary,0.7888005530591082,0.840995506394746,0.8596612512962323,0.8140338748703768,0.8396128586242655,0.8454891116488075,genome,0.9021776702385068,GENERanno,Prodigal
+118,Pseudomonas_aeruginosa_genome_0,2893,3734215,bp_precision,0.6592530802308224,0.6599689416462132,0.662594257630939,0.6588539339403323,0.660473103006434,0.6627374429937407,genome,0.6612322865086255,GeneLM,Prodigal
+119,Pseudomonas_aeruginosa_genome_0,2893,3734215,bp_sensitivity,0.9904777844875028,0.9978753231937636,0.9969176922057248,0.997021328445202,0.9971688828843546,0.9879249052344334,genome,0.99874377881295,GENERanno,GeneMarkS2
+120,Pseudomonas_fluorescens_genome_0,4456,5424215,exact_match,0.8121633752244165,0.8557001795332136,0.8783662477558348,0.8155296229802513,0.8471723518850988,0.8770197486535009,genome,0.9176391382405744,GENERanno,Prodigal
+121,Pseudomonas_fluorescens_genome_0,4456,5424215,acc_end,0.893850987432675,0.9207809694793536,0.9308797127468582,0.9039497307001796,0.9158438061041292,0.9268402154398564,genome,0.9526481149012568,GENERanno,Prodigal
+122,Pseudomonas_fluorescens_genome_0,4456,5424215,acc_start,0.8947486535008977,0.9221274685816876,0.9308797127468582,0.8981149012567325,0.9144973070017952,0.9315529622980252,genome,0.9555655296229802,GENERanno,GeneLM
+123,Pseudomonas_fluorescens_genome_0,4456,5424215,acc_boundary,0.8162028725314183,0.8583931777378815,0.88016157989228,0.8200179533213644,0.8494165170556554,0.8794883303411131,genome,0.9178635547576302,GENERanno,Prodigal
+124,Pseudomonas_fluorescens_genome_0,4456,5424215,bp_precision,0.9353801521375597,0.9336913830091854,0.934766412898408,0.9310747059516988,0.9312489850184412,0.9363037536476844,genome,0.9365325754301014,GENERanno,GeneLM
+125,Pseudomonas_fluorescens_genome_0,4456,5424215,bp_sensitivity,0.9847015651112648,0.9966997989570842,0.9960475386761034,0.9959406107611884,0.995867789163962,0.9800966591479136,genome,0.9989607712821118,GENERanno,GeneMarkS2
+126,Pseudomonas_putida_genome_0,4252,5241864,exact_match,0.8165569143932268,0.8673565380997178,0.8875823142050799,0.8301975540921919,0.8574788334901223,0.8849952963311383,genome,0.9205079962370648,GENERanno,Prodigal
+127,Pseudomonas_putida_genome_0,4252,5241864,acc_end,0.8958137347130762,0.9254468485418628,0.938381937911571,0.9134524929444968,0.9259172154280338,0.9348541862652868,genome,0.9571966133584195,GENERanno,Prodigal
+128,Pseudomonas_putida_genome_0,4252,5241864,acc_start,0.901928504233302,0.930620884289746,0.9381467544684854,0.9087488240827846,0.920978363123236,0.937206020696143,genome,0.9553151458137348,GENERanno,Prodigal
+129,Pseudomonas_putida_genome_0,4252,5241864,acc_boundary,0.8214957666980245,0.8694731890874883,0.8892285983066792,0.834901222953904,0.861241768579492,0.8885230479774224,genome,0.9214487300094072,GENERanno,Prodigal
+130,Pseudomonas_putida_genome_0,4252,5241864,bp_precision,0.952056027633826,0.9509521093270216,0.9538330266814542,0.94939563518342,0.9495854475167332,0.9539149696745384,genome,0.9547527358117304,GENERanno,GeneLM
+131,Pseudomonas_putida_genome_0,4252,5241864,bp_sensitivity,0.9846247441749728,0.9961048207278936,0.9959079441969498,0.9955473854338838,0.9956973320940796,0.9784469799292772,genome,0.9984930932965832,GENERanno,GeneMarkS2
+132,Ralstonia_solanacearum_genome_0,2521,2871229,exact_match,0.7651725505751685,0.8318127727092424,0.8627528758429195,0.8167393891312971,0.8381594605315351,0.8409361364537882,genome,0.9028163427211424,GENERanno,Prodigal
+133,Ralstonia_solanacearum_genome_0,2521,2871229,acc_end,0.8746529155097184,0.9040063466878224,0.9218564061880208,0.899642998809996,0.9107497024990084,0.907576358587862,genome,0.9444664815549384,GENERanno,Prodigal
+134,Ralstonia_solanacearum_genome_0,2521,2871229,acc_start,0.8762395874652915,0.918286394287981,0.925029750099167,0.9079730265767552,0.9139230464101546,0.9147163823879412,genome,0.9480364934549782,GENERanno,Prodigal
+135,Ralstonia_solanacearum_genome_0,2521,2871229,acc_boundary,0.7719159063863547,0.8373661245537485,0.8651328837762793,0.8234827449424832,0.8417294724315748,0.8456961523205078,genome,0.9047996826656088,GENERanno,Prodigal
+136,Ralstonia_solanacearum_genome_0,2521,2871229,bp_precision,0.9304874246073054,0.932060018817134,0.9364607839687048,0.9301506148055534,0.932760320497152,0.9344519786090468,genome,0.938531095011917,GENERanno,Prodigal
+137,Ralstonia_solanacearum_genome_0,2521,2871229,bp_sensitivity,0.9831664419661408,0.9936765754316356,0.991653748272952,0.9934090941544544,0.9928271134068372,0.9620462178391204,genome,0.9967797761864344,GENERanno,GeneMarkS2
+138,Roseobacter_denitrificans_genome_0,2782,3523068,exact_match,0.7595255212077642,0.8260244428468727,0.8350107836089145,0.8033788641265277,0.803019410496046,0.8120057512580877,genome,0.8817397555715313,GENERanno,Prodigal
+139,Roseobacter_denitrificans_genome_0,2782,3523068,acc_end,0.8781452192667146,0.9122933141624732,0.9126527677929548,0.9007907979870596,0.891804457225018,0.9072609633357296,genome,0.937095614665708,GENERanno,Prodigal
+140,Roseobacter_denitrificans_genome_0,2782,3523068,acc_start,0.879942487419123,0.9115744069015096,0.9169662113587348,0.902588066139468,0.904744787922358,0.909058231488138,genome,0.9388928828181164,GENERanno,Prodigal
+141,Roseobacter_denitrificans_genome_0,2782,3523068,acc_boundary,0.7724658519051042,0.8342918763479511,0.8400431344356578,0.8141624730409777,0.811646297627606,0.8278217109992811,genome,0.883177570093458,GENERanno,Prodigal
+142,Roseobacter_denitrificans_genome_0,2782,3523068,bp_precision,0.9303450995239264,0.9375010688693928,0.9377512539327284,0.935449170092385,0.9343027525897318,0.9435343491764748,genome,0.9411497845234008,GeneLM,GENERanno
+143,Roseobacter_denitrificans_genome_0,2782,3523068,bp_sensitivity,0.9918377959210553,0.995832041845346,0.996616301473602,0.9954633291210956,0.9940495045795312,0.9471327263623636,genome,0.9986886429668688,GENERanno,Prodigal
+144,Staphylococcus_epidermidis_genome_0,1763,1977942,exact_match,0.88712422007941,0.8752127056154283,0.902439024390244,0.8275666477595008,0.817356778218945,0.88712422007941,genome,0.9534883720930232,GENERanno,Prodigal
+145,Staphylococcus_epidermidis_genome_0,1763,1977942,acc_end,0.9364719228587636,0.9273964832671584,0.942711287577992,0.9030062393647192,0.90414066931367,0.9313669880884856,genome,0.9744753261486104,GENERanno,Prodigal
+146,Staphylococcus_epidermidis_genome_0,1763,1977942,acc_start,0.9370391378332388,0.9228587634713556,0.9393079977311402,0.9030062393647192,0.8967668746454907,0.9313669880884856,genome,0.9767441860465116,GENERanno,Prodigal
+147,Staphylococcus_epidermidis_genome_0,1763,1977942,acc_boundary,0.893930799773114,0.8803176403857061,0.9047078842881452,0.8360748723766307,0.8247305728871243,0.8944980147475894,genome,0.9557572319909244,GENERanno,Prodigal
+148,Staphylococcus_epidermidis_genome_0,1763,1977942,bp_precision,0.9594774542779834,0.9617702724960376,0.960333647338246,0.9594591932032676,0.9528751835106966,0.9622742934735636,genome,0.9602003605829944,GeneLM,GeneMarkS2
+149,Staphylococcus_epidermidis_genome_0,1763,1977942,bp_sensitivity,0.9912211783763124,0.9860359909441228,0.9926752149456354,0.9847851959258664,0.9893692534968164,0.9738126800482522,genome,0.9994959407303148,GENERanno,Prodigal
+150,Streptococcus_agalactiae_genome_0,1522,1749739,exact_match,0.8659658344283837,0.8699080157687253,0.8902759526938239,0.8219448094612353,0.8147174770039421,0.8534822601839684,genome,0.9467805519053876,GENERanno,Prodigal
+151,Streptococcus_agalactiae_genome_0,1522,1749739,acc_end,0.9395532194480948,0.9323258869908017,0.9507227332457292,0.909986859395532,0.9067017082785808,0.919185282522996,genome,0.9730617608409988,GENERanno,Prodigal
+152,Streptococcus_agalactiae_genome_0,1522,1749739,acc_start,0.9270696452036794,0.931011826544021,0.9342969776609724,0.9067017082785808,0.8981603153745072,0.9211563731931668,genome,0.9724047306176083,GENERanno,Prodigal
+153,Streptococcus_agalactiae_genome_0,1522,1749739,acc_boundary,0.8863337713534822,0.8869908015768725,0.9034165571616294,0.8409986859395532,0.8272010512483574,0.8692509855453351,genome,0.9487516425755584,GENERanno,Prodigal
+154,Streptococcus_agalactiae_genome_0,1522,1749739,bp_precision,0.9560054750706902,0.9575295555153608,0.9572865942946208,0.954057368732188,0.9530534894079538,0.9574847931386824,genome,0.9573650539258832,GeneMarkS2,GeneLM
+155,Streptococcus_agalactiae_genome_0,1522,1749739,bp_sensitivity,0.9887428925113976,0.9893406959552252,0.99196851644731,0.9887646100361254,0.9917336242719628,0.95755538397441,genome,0.9996119421239396,GENERanno,Prodigal
+156,Streptococcus_pneumoniae_genome_0,1584,1756081,exact_match,0.8131313131313131,0.8232323232323232,0.8371212121212122,0.7765151515151515,0.7878787878787878,0.8181818181818182,genome,0.9078282828282828,GENERanno,Prodigal
+157,Streptococcus_pneumoniae_genome_0,1584,1756081,acc_end,0.898989898989899,0.9015151515151516,0.9008838383838385,0.8787878787878788,0.8768939393939394,0.8876262626262627,genome,0.9507575757575758,GENERanno,GeneMarkS2
+158,Streptococcus_pneumoniae_genome_0,1584,1756081,acc_start,0.8964646464646465,0.8876262626262627,0.9002525252525253,0.8674242424242424,0.8787878787878788,0.8832070707070707,genome,0.9457070707070708,GENERanno,Prodigal
+159,Streptococcus_pneumoniae_genome_0,1584,1756081,acc_boundary,0.836489898989899,0.8402777777777778,0.8522727272727273,0.7992424242424242,0.8074494949494949,0.8345959595959596,genome,0.9109848484848484,GENERanno,Prodigal
+160,Streptococcus_pneumoniae_genome_0,1584,1756081,bp_precision,0.94783408564512,0.9522971692076896,0.9511006168282988,0.9496169429768828,0.946714712071408,0.954793218665624,genome,0.9513154483415468,GeneLM,GeneMarkS2
+161,Streptococcus_pneumoniae_genome_0,1584,1756081,bp_sensitivity,0.9799132272372402,0.9788865092213856,0.978056251391593,0.979221345712413,0.9799473942261204,0.9428169885102112,genome,0.998784224645674,GENERanno,MetaProdigal
+162,Synechocystis_PCC_6803_genome_0,2705,2871673,exact_match,0.7049907578558225,0.6831792975970425,0.8321626617375231,0.7375231053604436,0.7752310536044362,0.6909426987060998,genome,0.8369685767097966,GENERanno,Prodigal
+163,Synechocystis_PCC_6803_genome_0,2705,2871673,acc_end,0.8425138632162662,0.8306839186691313,0.9079482439926064,0.8609981515711645,0.8750462107208873,0.8369685767097966,genome,0.9157116451016636,GENERanno,Prodigal
+164,Synechocystis_PCC_6803_genome_0,2705,2871673,acc_start,0.8362292051756007,0.8177449168207024,0.9083179297597044,0.8462107208872458,0.878003696857671,0.8125693160813309,genome,0.9131238447319778,GENERanno,Prodigal
+165,Synechocystis_PCC_6803_genome_0,2705,2871673,acc_boundary,0.7083179297597042,0.6853974121996304,0.8347504621072088,0.7404805914972273,0.7792975970425139,0.6972273567467653,genome,0.8391866913123844,GENERanno,Prodigal
+166,Synechocystis_PCC_6803_genome_0,2705,2871673,bp_precision,0.8986480490461916,0.9163962077855587,0.9143432641352464,0.9136596083858648,0.9108313096010896,0.9152939128638542,genome,0.9156888133970464,GeneMarkS2,GENERanno
+167,Synechocystis_PCC_6803_genome_0,2705,2871673,bp_sensitivity,0.9838609758144468,0.977354663988553,0.99239223964567,0.9839455954769224,0.990397931797945,0.8825907406588425,genome,0.9951491691428656,GENERanno,Prodigal
+168,Thermotoga_maritima_genome_0,1133,1675323,exact_match,0.8102383053839365,0.7819947043248014,0.8296557811120918,0.7519858781994704,0.678729037952339,0.6840247131509267,genome,0.8314210061782877,GENERanno,Prodigal
+169,Thermotoga_maritima_genome_0,1133,1675323,acc_end,0.8949691085613416,0.8755516328331863,0.9029126213592232,0.8711385701676964,0.8314210061782877,0.8464254192409533,genome,0.9064430714916152,GENERanno,Prodigal
+170,Thermotoga_maritima_genome_0,1133,1675323,acc_start,0.9046778464254192,0.8826125330979699,0.912621359223301,0.8711385701676964,0.8375992939099736,0.8702559576345984,genome,0.9152691968225948,GENERanno,Prodigal
+171,Thermotoga_maritima_genome_0,1133,1675323,acc_boundary,0.8190644307149162,0.7864077669902912,0.8323036187113857,0.7678729037952339,0.6954986760812003,0.7387466902030009,genome,0.8349514563106796,GENERanno,Prodigal
+172,Thermotoga_maritima_genome_0,1133,1675323,bp_precision,0.9362756744522802,0.9380074526621066,0.9394525417943408,0.9364855696759888,0.9360928866966493,0.934576640095248,genome,0.9394837608738756,GENERanno,Prodigal
+173,Thermotoga_maritima_genome_0,1133,1675323,bp_sensitivity,0.99264201589783,0.996184616339655,0.9971927801385164,0.995309561201034,0.9937976139526528,0.8996062251876206,genome,0.9983519595922696,GENERanno,Prodigal
+174,Treponema_denticola_genome_0,1744,2218372,exact_match,0.845756880733945,0.8549311926605505,0.8996559633027523,0.8147935779816514,0.8371559633027523,0.8245412844036697,genome,0.8847477064220184,Prodigal,GENERanno
+175,Treponema_denticola_genome_0,1744,2218372,acc_end,0.9208715596330276,0.9260321100917432,0.9426605504587156,0.9030963302752294,0.911697247706422,0.9105504587155964,genome,0.9340596330275228,Prodigal,GENERanno
+176,Treponema_denticola_genome_0,1744,2218372,acc_start,0.9237385321100916,0.9231651376146788,0.9478211009174312,0.9059633027522936,0.9145642201834864,0.911697247706422,genome,0.944954128440367,Prodigal,GENERanno
+177,Treponema_denticola_genome_0,1744,2218372,acc_boundary,0.856651376146789,0.8663990825688074,0.904816513761468,0.8285550458715596,0.8451834862385321,0.838302752293578,genome,0.8893348623853211,Prodigal,GENERanno
+178,Treponema_denticola_genome_0,1744,2218372,bp_precision,0.8434817863317167,0.8488682820781669,0.8482624452967168,0.8469177713943379,0.8473970786694636,0.8463383911694311,genome,0.8496107147394842,GENERanno,GeneMarkS2
+179,Treponema_denticola_genome_0,1744,2218372,bp_sensitivity,0.9941073904647192,0.994488300429324,0.9965240275300986,0.9941254217056472,0.9946582448750706,0.9461956786327992,genome,0.9977456441029728,GENERanno,Prodigal
+180,Treponema_pallidum_genome_0,703,947413,exact_match,0.5761024182076814,0.5078236130867709,0.6529160739687055,0.5206258890469416,0.6401137980085349,0.5092460881934566,genome,0.7311522048364154,GENERanno,Prodigal
+181,Treponema_pallidum_genome_0,703,947413,acc_end,0.7780938833570412,0.7268847795163584,0.8122332859174964,0.7297297297297297,0.8036984352773826,0.7439544807965861,genome,0.8677098150782361,GENERanno,Prodigal
+182,Treponema_pallidum_genome_0,703,947413,acc_start,0.7681365576102418,0.6984352773826458,0.8122332859174964,0.7126600284495022,0.802275960170697,0.7339971550497866,genome,0.8492176386913229,GENERanno,Prodigal
+183,Treponema_pallidum_genome_0,703,947413,acc_boundary,0.5832147937411095,0.5334281650071123,0.6586059743954481,0.55049786628734,0.647226173541963,0.5405405405405406,genome,0.7382645803698435,GENERanno,Prodigal
+184,Treponema_pallidum_genome_0,703,947413,bp_precision,0.8804155479188229,0.9018918888104618,0.8918005248347435,0.8986380476621467,0.8916033333238346,0.8915010888896112,genome,0.8950272261902391,GeneMarkS2,MetaGeneMark2
+185,Treponema_pallidum_genome_0,703,947413,bp_sensitivity,0.986738624021414,0.918446337552894,0.9918156073433656,0.9201362024798057,0.9907474353845684,0.8105905238792375,genome,0.9963658932271352,GENERanno,Prodigal
+186,Ureaplasma_parvum_genome_0,422,591342,exact_match,0.1919431279620853,0.1895734597156398,0.1966824644549763,0.8507109004739336,0.8649289099526066,0.1848341232227488,genome,0.9004739336492891,GENERanno,MetaProdigal
+187,Ureaplasma_parvum_genome_0,422,591342,acc_end,0.6635071090047393,0.6445497630331753,0.6777251184834123,0.9170616113744076,0.9289099526066352,0.2962085308056872,genome,0.943127962085308,GENERanno,MetaProdigal
+188,Ureaplasma_parvum_genome_0,422,591342,acc_start,0.6682464454976303,0.6492890995260664,0.6872037914691943,0.919431279620853,0.9265402843601896,0.3104265402843602,genome,0.9478672985781992,GENERanno,MetaProdigal
+189,Ureaplasma_parvum_genome_0,422,591342,acc_boundary,0.4597156398104265,0.438388625592417,0.4739336492890995,0.8578199052132701,0.8696682464454977,0.1966824644549763,genome,0.9004739336492891,GENERanno,MetaProdigal
+190,Ureaplasma_parvum_genome_0,422,591342,bp_precision,0.8563460542220688,0.8775840384873683,0.8644508642781046,0.8558599313549231,0.8563949924058964,0.8555238899150042,genome,0.857096576901677,GeneMarkS2,Prodigal
+191,Ureaplasma_parvum_genome_0,422,591342,bp_sensitivity,0.7547561309698956,0.7292379029394158,0.7615559185716556,0.9917949342343348,0.994519246053891,0.1731079476850959,genome,0.997705219652925,GENERanno,MetaProdigal
+192,Wolbachia_endosymbiont_genome_0,882,945608,exact_match,0.645124716553288,0.6394557823129252,0.7256235827664399,0.6666666666666666,0.699546485260771,0.673469387755102,genome,0.7789115646258503,GENERanno,Prodigal
+193,Wolbachia_endosymbiont_genome_0,882,945608,acc_end,0.8151927437641724,0.8106575963718821,0.8594104308390023,0.8174603174603174,0.8401360544217688,0.8117913832199547,genome,0.8900226757369615,GENERanno,Prodigal
+194,Wolbachia_endosymbiont_genome_0,882,945608,acc_start,0.8015873015873016,0.7845804988662132,0.8412698412698413,0.8061224489795918,0.8219954648526077,0.8015873015873016,genome,0.8752834467120182,GENERanno,Prodigal
+195,Wolbachia_endosymbiont_genome_0,882,945608,acc_boundary,0.6746031746031746,0.6700680272108843,0.7471655328798186,0.691609977324263,0.719954648526077,0.6904761904761905,genome,0.7857142857142857,GENERanno,Prodigal
+196,Wolbachia_endosymbiont_genome_0,882,945608,bp_precision,0.8540200715192063,0.8774745647336795,0.8696045185052103,0.8745978405109455,0.8713988985614922,0.8756230385822411,genome,0.8731002969139838,GeneMarkS2,GeneLM
+197,Wolbachia_endosymbiont_genome_0,882,945608,bp_sensitivity,0.9708399252121388,0.9637820323009112,0.9827772184668488,0.9688105430580114,0.9773785754773648,0.8828309405165777,genome,0.996978663463084,GENERanno,Prodigal

results/bacteria_genome_metrics_summary.csv

@@ -0,0 +1,7 @@
+,metric,Glimmer3,GeneMarkS2,Prodigal,MetaGeneMark2,MetaProdigal,GeneLM,GENERanno,best_model,second_best_model
+0,acc_start,0.885175179281178,0.8949914425946619,0.9135914227924016,0.8848215674903464,0.8894750986576896,0.8915119025728794,0.9403527631225336,GENERanno,Prodigal
+1,acc_end,0.8841284883803165,0.8945812529172973,0.9136762896222012,0.8868442269339029,0.8885557080015276,0.8917240696473783,0.9400415847466018,GENERanno,Prodigal
+2,acc_boundary,0.7943535269240017,0.8154570786008288,0.8482722527899971,0.797493599626586,0.8024158757549612,0.8158531238065602,0.8908612568777493,GENERanno,Prodigal
+3,exact_match,0.7834764282380232,0.8063763278122745,0.8413838951045983,0.7884552822529315,0.7951031839205647,0.8057256821171445,0.8885839969447942,GENERanno,Prodigal
+4,bp_precision,0.9038912914974416,0.9096177427341242,0.9090442893037723,0.90741780274611,0.9058991051058292,0.9110621582710368,0.9101822092808718,GeneLM,GENERanno
+5,bp_sensitivity,0.9864406642325736,0.988611002652418,0.9920884583775584,0.9906866891100968,0.9923017718715856,0.9433971585935096,0.9978583081399168,GENERanno,MetaProdigal

results/bacteria_plasmid_metrics_details.csv

@@ -0,0 +1,97 @@
+,species_name,cds_gene,cds_bp,metric,Glimmer3,GeneMarkS2,Prodigal,MetaGeneMark2,MetaProdigal,GeneLM,type,GENERanno,best_model,second_best_model
+0,Bacillus_anthracis_plasmid_1,92,98559,exact_match,0.5760869565217391,0.5869565217391305,0.5978260869565217,0.5760869565217391,0.4673913043478261,0.5978260869565217,plasmid,0.8043478260869565,GENERanno,GeneLM
+1,Bacillus_anthracis_plasmid_1,92,98559,acc_end,0.7934782608695652,0.7717391304347826,0.75,0.7391304347826086,0.6956521739130435,0.7608695652173914,plasmid,0.8695652173913043,GENERanno,Glimmer3
+2,Bacillus_anthracis_plasmid_1,92,98559,acc_start,0.7608695652173914,0.7282608695652174,0.782608695652174,0.75,0.6739130434782609,0.7391304347826086,plasmid,0.8913043478260869,GENERanno,Prodigal
+3,Bacillus_anthracis_plasmid_1,92,98559,acc_boundary,0.6413043478260869,0.6086956521739131,0.6304347826086957,0.5978260869565217,0.5,0.6304347826086957,plasmid,0.8043478260869565,GENERanno,Glimmer3
+4,Bacillus_anthracis_plasmid_1,92,98559,bp_precision,0.6894282926269265,0.7150623770871457,0.6990405483416028,0.715298470683681,0.6965991789855551,0.7134058327592429,plasmid,0.7143397819409872,MetaGeneMark2,GeneMarkS2
+5,Bacillus_anthracis_plasmid_1,92,98559,bp_sensitivity,0.9749185766901044,0.9554987367972484,0.9706165849897016,0.957193153339624,0.9624488884830408,0.8825880944408933,plasmid,0.9958096165748436,GENERanno,Glimmer3
+6,Bacillus_anthracis_plasmid_2,58,52143,exact_match,0.6206896551724138,0.603448275862069,0.603448275862069,0.5862068965517241,0.5517241379310345,0.5,plasmid,0.7068965517241379,GENERanno,Glimmer3
+7,Bacillus_anthracis_plasmid_2,58,52143,acc_end,0.7586206896551724,0.7413793103448276,0.7586206896551724,0.7586206896551724,0.7586206896551724,0.6206896551724138,plasmid,0.8448275862068966,GENERanno,Prodigal
+8,Bacillus_anthracis_plasmid_2,58,52143,acc_start,0.7068965517241379,0.7413793103448276,0.7241379310344828,0.7068965517241379,0.7068965517241379,0.6896551724137931,plasmid,0.7931034482758621,GENERanno,GeneMarkS2
+9,Bacillus_anthracis_plasmid_2,58,52143,acc_boundary,0.6206896551724138,0.603448275862069,0.603448275862069,0.603448275862069,0.5862068965517241,0.5689655172413793,plasmid,0.7068965517241379,GENERanno,Glimmer3
+10,Bacillus_anthracis_plasmid_2,58,52143,bp_precision,0.6878952891460336,0.7176202634480358,0.705265682760956,0.7172550839836385,0.6984642067865835,0.6964957035445757,plasmid,0.7178006701559082,GENERanno,GeneMarkS2
+11,Bacillus_anthracis_plasmid_2,58,52143,bp_sensitivity,0.9303070402546842,0.9486795926586502,0.9586138120169534,0.948334388124964,0.9576740885641408,0.7958882304432042,plasmid,0.9942082350459314,GENERanno,Prodigal
+12,Clostridium_perfringens_plasmid_1,29,33477,exact_match,0.7931034482758621,0.7586206896551724,0.7241379310344828,0.6896551724137931,0.7586206896551724,0.7241379310344828,plasmid,0.7931034482758621,Glimmer3,GENERanno
+13,Clostridium_perfringens_plasmid_1,29,33477,acc_end,0.896551724137931,0.8620689655172413,0.8620689655172413,0.8620689655172413,0.896551724137931,0.7931034482758621,plasmid,0.8620689655172413,Glimmer3,MetaProdigal
+14,Clostridium_perfringens_plasmid_1,29,33477,acc_start,0.896551724137931,0.896551724137931,0.8275862068965517,0.8275862068965517,0.9310344827586208,0.7931034482758621,plasmid,0.896551724137931,MetaProdigal,GeneMarkS2
+15,Clostridium_perfringens_plasmid_1,29,33477,acc_boundary,0.8620689655172413,0.7586206896551724,0.7241379310344828,0.6896551724137931,0.8275862068965517,0.7241379310344828,plasmid,0.7931034482758621,Glimmer3,MetaProdigal
+16,Clostridium_perfringens_plasmid_1,29,33477,bp_precision,0.7107423269093505,0.7195366005514542,0.7115873753124101,0.716358024691358,0.7160348583877996,0.7095666205624712,plasmid,0.7184572883843398,GeneMarkS2,GENERanno
+17,Clostridium_perfringens_plasmid_1,29,33477,bp_sensitivity,0.9518176658601428,0.9666039370313948,0.961047883621591,0.970636556441736,0.9817486632613436,0.9194670968127372,plasmid,0.9943842040804134,GENERanno,MetaProdigal
+18,Deinococcus_deserti_plasmid_1,163,205806,exact_match,0.6503067484662577,0.7055214723926381,0.6687116564417178,0.6809815950920245,0.6134969325153374,0.6871165644171779,plasmid,0.7484662576687117,GENERanno,GeneMarkS2
+19,Deinococcus_deserti_plasmid_1,163,205806,acc_end,0.852760736196319,0.8773006134969326,0.8404907975460123,0.852760736196319,0.8220858895705522,0.8650306748466258,plasmid,0.8834355828220859,GENERanno,GeneMarkS2
+20,Deinococcus_deserti_plasmid_1,163,205806,acc_start,0.7791411042944786,0.7914110429447853,0.7852760736196319,0.7852760736196319,0.754601226993865,0.803680981595092,plasmid,0.8404907975460123,GENERanno,GeneLM
+21,Deinococcus_deserti_plasmid_1,163,205806,acc_boundary,0.6625766871165644,0.7177914110429447,0.6748466257668712,0.6871165644171779,0.6196319018404908,0.7055214723926381,plasmid,0.754601226993865,GENERanno,GeneMarkS2
+22,Deinococcus_deserti_plasmid_1,163,205806,bp_precision,0.8109754887367272,0.8682997292645164,0.8174577007205353,0.8586440706950655,0.8263299043023199,0.8663796845939067,plasmid,0.8620653181073912,GeneMarkS2,GeneLM
+23,Deinococcus_deserti_plasmid_1,163,205806,bp_sensitivity,0.9927067238078578,0.9755303538283626,0.9878477789763176,0.9758801978562336,0.9851267698706548,0.9212024916669096,plasmid,0.990010009426353,Glimmer3,GENERanno
+24,Deinococcus_deserti_plasmid_2,163,245434,exact_match,0.7055214723926381,0.7177914110429447,0.7361963190184049,0.754601226993865,0.7177914110429447,0.7116564417177914,plasmid,0.8404907975460123,GENERanno,MetaGeneMark2
+25,Deinococcus_deserti_plasmid_2,163,245434,acc_end,0.8711656441717791,0.8895705521472392,0.8588957055214724,0.8834355828220859,0.8466257668711656,0.8588957055214724,plasmid,0.9202453987730062,GENERanno,GeneMarkS2
+26,Deinococcus_deserti_plasmid_2,163,245434,acc_start,0.8404907975460123,0.8343558282208589,0.8650306748466258,0.8650306748466258,0.8466257668711656,0.8404907975460123,plasmid,0.9202453987730062,GENERanno,MetaGeneMark2
+27,Deinococcus_deserti_plasmid_2,163,245434,acc_boundary,0.7239263803680982,0.7423312883435583,0.7484662576687117,0.7730061349693251,0.7300613496932515,0.7300613496932515,plasmid,0.8404907975460123,GENERanno,MetaGeneMark2
+28,Deinococcus_deserti_plasmid_2,163,245434,bp_precision,0.8990727624429954,0.9134412863775336,0.9030105310929496,0.9116644557100928,0.9022615835167568,0.9083889661113178,plasmid,0.9125399197319928,GeneMarkS2,GENERanno
+29,Deinococcus_deserti_plasmid_2,163,245434,bp_sensitivity,0.9904291988884996,0.986000309655549,0.9890642698240668,0.9884245866505864,0.9904129012280288,0.9452561584784503,plasmid,0.9977468484399064,GENERanno,Glimmer3
+30,Deinococcus_deserti_plasmid_3,251,283859,exact_match,0.6454183266932271,0.7051792828685259,0.6852589641434262,0.7290836653386454,0.6812749003984063,0.6892430278884463,plasmid,0.7888446215139442,GENERanno,MetaGeneMark2
+31,Deinococcus_deserti_plasmid_3,251,283859,acc_end,0.8047808764940239,0.8366533864541833,0.8167330677290837,0.8565737051792829,0.8207171314741036,0.8007968127490039,plasmid,0.8884462151394422,GENERanno,MetaGeneMark2
+32,Deinococcus_deserti_plasmid_3,251,283859,acc_start,0.8007968127490039,0.8286852589641435,0.8207171314741036,0.8366533864541833,0.8167330677290837,0.8366533864541833,plasmid,0.8804780876494024,GENERanno,MetaGeneMark2
+33,Deinococcus_deserti_plasmid_3,251,283859,acc_boundary,0.6573705179282868,0.7091633466135459,0.6852589641434262,0.7330677290836654,0.6812749003984063,0.6972111553784861,plasmid,0.7928286852589641,GENERanno,MetaGeneMark2
+34,Deinococcus_deserti_plasmid_3,251,283859,bp_precision,0.8570723095346856,0.8988980093071355,0.8753710310214706,0.8959744107831049,0.876796378438107,0.9010466357128218,plasmid,0.90902629249349,GENERanno,GeneLM
+35,Deinococcus_deserti_plasmid_3,251,283859,bp_sensitivity,0.9782603334754226,0.9799055164712058,0.9880292680520962,0.9779115687718198,0.9811807975086222,0.8983262817102857,plasmid,0.9911963333908737,GENERanno,Prodigal
+36,Ralstonia_solanacearum_plasmid_1,1169,1633973,exact_match,0.6946107784431138,0.7784431137724551,0.7818648417450813,0.7476475620188195,0.7741659538066724,0.7698887938408896,plasmid,0.8391787852865698,GENERanno,Prodigal
+37,Ralstonia_solanacearum_plasmid_1,1169,1633973,acc_end,0.825491873396065,0.8768177929854577,0.8699743370402053,0.853721129170231,0.8579982891360137,0.8528656971770744,plasmid,0.90590248075278,GENERanno,GeneMarkS2
+38,Ralstonia_solanacearum_plasmid_1,1169,1633973,acc_start,0.8357570573139436,0.8776732249786142,0.8819503849443969,0.8639863130881095,0.8862275449101796,0.8699743370402053,plasmid,0.9110350727117196,GENERanno,MetaProdigal
+39,Ralstonia_solanacearum_plasmid_1,1169,1633973,acc_boundary,0.7005988023952096,0.7835757057313943,0.787852865697177,0.7519247219846023,0.7818648417450813,0.7750213857998289,plasmid,0.8426005132591959,GENERanno,Prodigal
+40,Ralstonia_solanacearum_plasmid_1,1169,1633973,bp_precision,0.8874223431076886,0.8965395413743265,0.9010879620712314,0.8947330882938351,0.8965536965060494,0.9004843911856107,plasmid,0.9030896160897828,GENERanno,Prodigal
+41,Ralstonia_solanacearum_plasmid_1,1169,1633973,bp_sensitivity,0.9840101397024308,0.9908352218794312,0.9877647917070844,0.990403758201635,0.988058554211116,0.9363428893867892,plasmid,0.9947967316473406,GENERanno,GeneMarkS2
+42,Roseobacter_denitrificans_plasmid_1,59,81518,exact_match,0.6440677966101694,0.7288135593220338,0.6779661016949152,0.7288135593220338,0.711864406779661,0.6949152542372882,plasmid,0.7627118644067796,GENERanno,MetaGeneMark2
+43,Roseobacter_denitrificans_plasmid_1,59,81518,acc_end,0.7627118644067796,0.864406779661017,0.7966101694915254,0.847457627118644,0.8135593220338984,0.8135593220338984,plasmid,0.864406779661017,GeneMarkS2,GENERanno
+44,Roseobacter_denitrificans_plasmid_1,59,81518,acc_start,0.864406779661017,0.847457627118644,0.864406779661017,0.864406779661017,0.864406779661017,0.864406779661017,plasmid,0.864406779661017,Glimmer3,Prodigal
+45,Roseobacter_denitrificans_plasmid_1,59,81518,acc_boundary,0.6779661016949152,0.7457627118644068,0.6949152542372882,0.7457627118644068,0.7288135593220338,0.711864406779661,plasmid,0.7627118644067796,GENERanno,MetaGeneMark2
+46,Roseobacter_denitrificans_plasmid_1,59,81518,bp_precision,0.8587353038715406,0.887420759184297,0.8649065826285494,0.8824905701634504,0.87166311022079,0.8992144760836022,plasmid,0.895146293423123,GeneLM,GENERanno
+47,Roseobacter_denitrificans_plasmid_1,59,81518,bp_sensitivity,0.9847150322628132,0.9977305625751368,0.9898181996614244,0.9901739493118084,0.9821634485635076,0.9436688829460976,plasmid,0.9979391054736376,GENERanno,GeneMarkS2
+48,Roseobacter_denitrificans_plasmid_2,37,51809,exact_match,0.6216216216216216,0.7837837837837838,0.7027027027027027,0.6486486486486487,0.6756756756756757,0.6756756756756757,plasmid,0.8378378378378378,GENERanno,GeneMarkS2
+49,Roseobacter_denitrificans_plasmid_2,37,51809,acc_end,0.6756756756756757,0.8648648648648649,0.7567567567567568,0.7567567567567568,0.8108108108108109,0.7837837837837838,plasmid,0.8918918918918919,GENERanno,GeneMarkS2
+50,Roseobacter_denitrificans_plasmid_2,37,51809,acc_start,0.8378378378378378,0.8378378378378378,0.8648648648648649,0.8108108108108109,0.8108108108108109,0.7837837837837838,plasmid,0.8918918918918919,GENERanno,Prodigal
+51,Roseobacter_denitrificans_plasmid_2,37,51809,acc_boundary,0.6216216216216216,0.7837837837837838,0.7027027027027027,0.6486486486486487,0.6756756756756757,0.6756756756756757,plasmid,0.8378378378378378,GENERanno,GeneMarkS2
+52,Roseobacter_denitrificans_plasmid_2,37,51809,bp_precision,0.8439317953861585,0.8608746550714943,0.8486269588335342,0.8538855281526291,0.8499274693393116,0.8853151862464184,plasmid,0.8575399004776407,GeneLM,GeneMarkS2
+53,Roseobacter_denitrificans_plasmid_2,37,51809,bp_sensitivity,0.9744252929027776,0.9935725453106604,0.991951205389025,0.99171958540022,0.9951938852322956,0.9541971472138046,plasmid,0.9945569302630816,MetaProdigal,GENERanno
+54,Staphylococcus_epidermidis_plasmid_1,18,13308,exact_match,0.7222222222222222,0.7777777777777778,0.6111111111111112,0.6111111111111112,0.6666666666666666,0.7222222222222222,plasmid,0.9444444444444444,GENERanno,GeneMarkS2
+55,Staphylococcus_epidermidis_plasmid_1,18,13308,acc_end,0.8333333333333334,0.8333333333333334,0.8333333333333334,0.7222222222222222,0.7777777777777778,0.7777777777777778,plasmid,0.9444444444444444,GENERanno,GeneMarkS2
+56,Staphylococcus_epidermidis_plasmid_1,18,13308,acc_start,0.7777777777777778,0.7777777777777778,0.6666666666666666,0.7222222222222222,0.7222222222222222,0.7777777777777778,plasmid,1.0,GENERanno,GeneMarkS2
+57,Staphylococcus_epidermidis_plasmid_1,18,13308,acc_boundary,0.7222222222222222,0.7777777777777778,0.6111111111111112,0.6111111111111112,0.6666666666666666,0.7222222222222222,plasmid,0.9444444444444444,GENERanno,GeneMarkS2
+58,Staphylococcus_epidermidis_plasmid_1,18,13308,bp_precision,0.8537612838515547,0.8712201311059421,0.8341882619412431,0.8647739221871714,0.8398368456832087,0.8673946957878315,plasmid,0.8816862199244383,GENERanno,GeneMarkS2
+59,Staphylococcus_epidermidis_plasmid_1,18,13308,bp_sensitivity,0.9594229035166816,0.9287646528403968,0.9409377817853922,0.9269612263300272,0.9283137962128044,0.8773669972948602,plasmid,0.9995491433724076,GENERanno,Glimmer3
+60,Staphylococcus_epidermidis_plasmid_2,4,3567,exact_match,0.5,1.0,1.0,1.0,1.0,0.5,plasmid,1.0,GeneMarkS2,Prodigal
+61,Staphylococcus_epidermidis_plasmid_2,4,3567,acc_end,0.5,1.0,1.0,1.0,1.0,0.5,plasmid,1.0,GeneMarkS2,Prodigal
+62,Staphylococcus_epidermidis_plasmid_2,4,3567,acc_start,0.5,1.0,1.0,1.0,1.0,0.75,plasmid,1.0,GeneMarkS2,Prodigal
+63,Staphylococcus_epidermidis_plasmid_2,4,3567,acc_boundary,0.5,1.0,1.0,1.0,1.0,0.5,plasmid,1.0,GeneMarkS2,Prodigal
+64,Staphylococcus_epidermidis_plasmid_2,4,3567,bp_precision,1.0,1.0,0.9721995094031072,1.0,0.9721995094031072,1.0,plasmid,1.0,Glimmer3,GeneMarkS2
+65,Staphylococcus_epidermidis_plasmid_2,4,3567,bp_sensitivity,0.6131202691337259,1.0,1.0,1.0,1.0,0.8973927670311186,plasmid,1.0,GeneMarkS2,Prodigal
+66,Streptococcus_agalactiae_plasmid_1,5,1971,exact_match,0.2,0.4,0.2,0.2,0.2,0.4,plasmid,0.2,GeneMarkS2,GeneLM
+67,Streptococcus_agalactiae_plasmid_1,5,1971,acc_end,0.4,0.8,0.6,0.6,0.6,0.6,plasmid,0.6,GeneMarkS2,Prodigal
+68,Streptococcus_agalactiae_plasmid_1,5,1971,acc_start,0.4,0.4,0.4,0.4,0.4,0.6,plasmid,0.4,GeneLM,GeneMarkS2
+69,Streptococcus_agalactiae_plasmid_1,5,1971,acc_boundary,0.2,0.4,0.2,0.2,0.2,0.4,plasmid,0.2,GeneMarkS2,GeneLM
+70,Streptococcus_agalactiae_plasmid_1,5,1971,bp_precision,0.5068382944489139,0.6168495803744352,0.5702775290957923,0.6109335038363172,0.5702775290957923,0.8955014058106842,plasmid,0.6134809508303484,GeneLM,GeneMarkS2
+71,Streptococcus_agalactiae_plasmid_1,5,1971,bp_sensitivity,0.958904109589041,0.969558599695586,0.969558599695586,0.969558599695586,0.969558599695586,0.969558599695586,plasmid,0.9558599695585996,GeneMarkS2,Prodigal
+72,Synechocystis_PCC_6803_plasmid_1,61,60110,exact_match,0.7540983606557377,0.7377049180327869,0.7540983606557377,0.6557377049180327,0.8032786885245902,0.6721311475409836,plasmid,0.8360655737704918,GENERanno,MetaProdigal
+73,Synechocystis_PCC_6803_plasmid_1,61,60110,acc_end,0.8032786885245902,0.8032786885245902,0.8524590163934426,0.7704918032786885,0.8852459016393442,0.8032786885245902,plasmid,0.918032786885246,GENERanno,MetaProdigal
+74,Synechocystis_PCC_6803_plasmid_1,61,60110,acc_start,0.918032786885246,0.8852459016393442,0.8852459016393442,0.819672131147541,0.918032786885246,0.7540983606557377,plasmid,0.9016393442622952,Glimmer3,MetaProdigal
+75,Synechocystis_PCC_6803_plasmid_1,61,60110,acc_boundary,0.7540983606557377,0.7540983606557377,0.7540983606557377,0.6557377049180327,0.819672131147541,0.6721311475409836,plasmid,0.8360655737704918,GENERanno,MetaProdigal
+76,Synechocystis_PCC_6803_plasmid_1,61,60110,bp_precision,0.7051930726982105,0.7616929998953647,0.7228696687993516,0.7569405687437538,0.739764846255189,0.7588278281204326,plasmid,0.7553109479457595,GeneMarkS2,GeneLM
+77,Synechocystis_PCC_6803_plasmid_1,61,60110,bp_sensitivity,0.9761603726501414,0.9688238229911827,0.9792713358842122,0.9702212610214608,0.990184661454001,0.8637331558808851,plasmid,0.9942937947096988,GENERanno,MetaProdigal
+78,Synechocystis_PCC_6803_plasmid_2,31,30228,exact_match,0.6451612903225806,0.7096774193548387,0.6451612903225806,0.7419354838709677,0.7741935483870968,0.5483870967741935,plasmid,0.8387096774193549,GENERanno,MetaProdigal
+79,Synechocystis_PCC_6803_plasmid_2,31,30228,acc_end,0.7741935483870968,0.8064516129032258,0.8064516129032258,0.8709677419354839,0.9032258064516128,0.8064516129032258,plasmid,0.9032258064516128,MetaProdigal,GENERanno
+80,Synechocystis_PCC_6803_plasmid_2,31,30228,acc_start,0.7741935483870968,0.9032258064516128,0.7096774193548387,0.8709677419354839,0.8387096774193549,0.6451612903225806,plasmid,0.9032258064516128,GeneMarkS2,GENERanno
+81,Synechocystis_PCC_6803_plasmid_2,31,30228,acc_boundary,0.6774193548387096,0.7419354838709677,0.6451612903225806,0.7741935483870968,0.8064516129032258,0.5483870967741935,plasmid,0.8387096774193549,GENERanno,MetaProdigal
+82,Synechocystis_PCC_6803_plasmid_2,31,30228,bp_precision,0.7454716667589875,0.8084540669596831,0.7512587320416502,0.8029971648440665,0.7825093259076341,0.7790096357751405,plasmid,0.7837971907472194,GeneMarkS2,MetaGeneMark2
+83,Synechocystis_PCC_6803_plasmid_2,31,30228,bp_sensitivity,0.8904327113934101,0.9857747783511976,0.9428013762074896,0.9838229456133386,0.9854108773322748,0.6927021304750562,plasmid,0.9931520444620882,GENERanno,GeneMarkS2
+84,Synechocystis_PCC_6803_plasmid_3,84,81297,exact_match,0.6785714285714286,0.6071428571428571,0.7380952380952381,0.7023809523809523,0.7023809523809523,0.5476190476190477,plasmid,0.7976190476190477,GENERanno,Prodigal
+85,Synechocystis_PCC_6803_plasmid_3,84,81297,acc_end,0.7619047619047619,0.7261904761904762,0.8214285714285714,0.7976190476190477,0.7857142857142857,0.7380952380952381,plasmid,0.8809523809523809,GENERanno,Prodigal
+86,Synechocystis_PCC_6803_plasmid_3,84,81297,acc_start,0.8452380952380952,0.7738095238095238,0.8333333333333334,0.8095238095238095,0.8333333333333334,0.7380952380952381,plasmid,0.8690476190476191,GENERanno,Glimmer3
+87,Synechocystis_PCC_6803_plasmid_3,84,81297,acc_boundary,0.6904761904761905,0.6190476190476191,0.7380952380952381,0.7142857142857143,0.7023809523809523,0.5476190476190477,plasmid,0.7976190476190477,GENERanno,Prodigal
+88,Synechocystis_PCC_6803_plasmid_3,84,81297,bp_precision,0.7697467194415739,0.8090330815425498,0.7962319042732318,0.7932908296406971,0.7976869930910183,0.815091056721958,plasmid,0.8034558742883352,GeneLM,GeneMarkS2
+89,Synechocystis_PCC_6803_plasmid_3,84,81297,bp_sensitivity,0.9712043494839908,0.95119131087248,0.983025203882062,0.9535161199060236,0.9799254585040038,0.8643492379792612,plasmid,0.9911927869417076,GENERanno,Prodigal
+90,Synechocystis_PCC_6803_plasmid_4,54,62371,exact_match,0.4814814814814814,0.5370370370370371,0.6296296296296297,0.5370370370370371,0.6481481481481481,0.5555555555555556,plasmid,0.7037037037037037,GENERanno,MetaProdigal
+91,Synechocystis_PCC_6803_plasmid_4,54,62371,acc_end,0.8148148148148148,0.8703703703703703,0.8888888888888888,0.8148148148148148,0.8333333333333334,0.8148148148148148,plasmid,0.9074074074074074,GENERanno,Prodigal
+92,Synechocystis_PCC_6803_plasmid_4,54,62371,acc_start,0.5555555555555556,0.5555555555555556,0.6851851851851852,0.5740740740740741,0.7222222222222222,0.6296296296296297,plasmid,0.7037037037037037,MetaProdigal,GENERanno
+93,Synechocystis_PCC_6803_plasmid_4,54,62371,acc_boundary,0.4814814814814814,0.5555555555555556,0.6481481481481481,0.5555555555555556,0.6481481481481481,0.5555555555555556,plasmid,0.7037037037037037,GENERanno,MetaProdigal
+94,Synechocystis_PCC_6803_plasmid_4,54,62371,bp_precision,0.6563900672868251,0.6755743921481151,0.671386111861659,0.6773224653863332,0.6610726402876927,0.6489311047895784,plasmid,0.6686331183537887,MetaGeneMark2,GeneMarkS2
+95,Synechocystis_PCC_6803_plasmid_4,54,62371,bp_sensitivity,0.965015792595918,0.9711564669477802,0.9959756938320694,0.9725834121627038,0.99029997915698,0.8521909220631383,plasmid,0.9940036234788604,Prodigal,GENERanno

results/bacteria_plasmid_metrics_summary.csv

@@ -0,0 +1,7 @@
+,metric,Glimmer3,GeneMarkS2,Prodigal,MetaGeneMark2,MetaProdigal,GeneLM,GENERanno,best_model,second_best_model
+0,acc_start,0.8165057067603161,0.8397717295873574,0.8463564530289728,0.8336259877085163,0.844161545215101,0.8287971905179983,0.8906935908691836,GENERanno,Prodigal
+1,acc_end,0.8169446883230904,0.8560140474100087,0.8463564530289728,0.8410886742756805,0.8371378402107111,0.8270412642669008,0.8977172958735732,GENERanno,GeneMarkS2
+2,acc_boundary,0.684811237928007,0.7414398595258999,0.7396839332748024,0.7238805970149254,0.7300263388937664,0.7221246707638279,0.8173836698858647,GENERanno,GeneMarkS2
+3,exact_match,0.6729587357330992,0.7326602282704127,0.733099209833187,0.7164179104477612,0.7203687445127305,0.7124670763827919,0.8147497805092186,GENERanno,Prodigal
+4,bp_precision,0.8527452084941908,0.8730963237439808,0.8651772557473615,0.8701059860807995,0.8639253323566316,0.874564770135962,0.8766853686344422,GENERanno,GeneLM
+5,bp_sensitivity,0.9803679624961302,0.98403499998299,0.985836709838302,0.983778827867988,0.9854488795446736,0.9203284310223412,0.9943199872084044,GENERanno,Prodigal