Florent Gbelidji commited on
Commit
ffabbd2
·
verified ·
1 Parent(s): b87a1d9

Sync DeepSeek OCR HF job code

Browse files
Files changed (1) hide show
  1. ds_batch_ocr/stages.py +120 -38
ds_batch_ocr/stages.py CHANGED
@@ -208,14 +208,8 @@ def _dataset_features() -> Features:
208
  "document_with_boxes_image_path": HfImage(),
209
  "raw_response_path": Value("string"),
210
  "source_image_path": HfImage(),
211
- "figures": Sequence(
212
- {
213
- "figure_id": Value("string"),
214
- "image_path": Value("string"),
215
- "image": HfImage(),
216
- "description": Value("string"),
217
- }
218
- ),
219
  }
220
  )
221
 
@@ -236,6 +230,7 @@ def _build_dataset_records(documents: List[Dict[str, Any]]) -> List[Dict[str, An
236
  document_with_boxes_relpath = relpath_obj.with_suffix(".png").as_posix()
237
 
238
  figure_entries: List[Dict[str, Any]] = []
 
239
  for figure in figures:
240
  figure_image_relpath = _coerce_to_str(
241
  figure.get("image")
@@ -247,14 +242,13 @@ def _build_dataset_records(documents: List[Dict[str, Any]]) -> List[Dict[str, An
247
  figure_relpath_obj = Path(figure_image_relpath)
248
  if figure_relpath_obj.suffix.lower() != ".png":
249
  figure_image_relpath = figure_relpath_obj.with_suffix(".png").as_posix()
250
- figure_entries.append(
251
- {
252
- "figure_id": _coerce_to_str(figure.get("figure_id")),
253
- "image_path": figure_image_relpath,
254
- "image": figure_image_relpath,
255
- "description": _coerce_to_str(figure.get("description")),
256
- }
257
- )
258
 
259
  records.append(
260
  {
@@ -268,6 +262,7 @@ def _build_dataset_records(documents: List[Dict[str, Any]]) -> List[Dict[str, An
268
  "raw_response_path": doc.get("raw_response_path", ""),
269
  "source_image_path": doc.get("source_image_path", ""),
270
  "figures": figure_entries,
 
271
  }
272
  )
273
  return records
@@ -319,26 +314,73 @@ def _push_dataset_records(
319
  output_dir,
320
  record.get("source_image_path")
321
  )
322
- figure_entries: List[Dict[str, Any]] = []
323
- for figure in record.get("figures", []):
324
- raw_figure_path = figure.get("image") or figure.get("image_path")
 
 
 
 
 
 
 
 
 
 
 
 
325
  if not raw_figure_path:
326
  LOGGER.warning(
327
  "Skipping figure with missing image reference | sample=%s | figure=%s",
328
  sample_id or "<unknown>",
329
- figure.get("figure_id"),
330
  )
331
  continue
332
 
333
- figure_image_path = _resolve_image_path(output_dir, raw_figure_path)
334
- figure_entries.append(
335
- {
336
- "figure_id": _coerce_to_str(figure.get("figure_id")),
337
- "image_path": _coerce_to_str(figure.get("image_path") or raw_figure_path),
338
- "image": figure_image_path,
339
- "description": _coerce_to_str(figure.get("description")),
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
340
  }
341
- )
342
 
343
  normalized_records.append(
344
  {
@@ -359,7 +401,8 @@ def _push_dataset_records(
359
  "document_with_boxes_image_path": document_with_boxes_image_path,
360
  "raw_response_path": _coerce_to_str(record.get("raw_response_path")),
361
  "source_image_path": source_image_path,
362
- "figures": figure_entries,
 
363
  }
364
  )
365
 
@@ -1023,6 +1066,53 @@ def publish_dataset_viewer_assets(
1023
  normalized: List[Dict[str, Any]] = []
1024
  for record in dataset_records:
1025
  figures = record.get("figures", []) or []
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1026
  normalized.append(
1027
  {
1028
  "sample_id": str(record.get("sample_id", "")),
@@ -1030,15 +1120,7 @@ def publish_dataset_viewer_assets(
1030
  "document_markdown_path": str(record.get("document_markdown_path", "")),
1031
  "document_markdown_text": record.get("document_markdown_text", ""),
1032
  "document_with_boxes_image": record.get("document_with_boxes_image_path"),
1033
- "figures": [
1034
- {
1035
- "figure_id": str(fig.get("figure_id", "")),
1036
- "image_path": str(fig.get("image_path", "")),
1037
- "image": str(fig.get("image") or fig.get("image_path") or ""),
1038
- "description": fig.get("description", ""),
1039
- }
1040
- for fig in figures
1041
- ],
1042
  }
1043
  )
1044
 
 
208
  "document_with_boxes_image_path": HfImage(),
209
  "raw_response_path": Value("string"),
210
  "source_image_path": HfImage(),
211
+ "figures": Sequence(HfImage()),
212
+ "figures_metadata": Sequence(Value("string")),
 
 
 
 
 
 
213
  }
214
  )
215
 
 
230
  document_with_boxes_relpath = relpath_obj.with_suffix(".png").as_posix()
231
 
232
  figure_entries: List[Dict[str, Any]] = []
233
+ figure_metadata_json: List[str] = []
234
  for figure in figures:
235
  figure_image_relpath = _coerce_to_str(
236
  figure.get("image")
 
242
  figure_relpath_obj = Path(figure_image_relpath)
243
  if figure_relpath_obj.suffix.lower() != ".png":
244
  figure_image_relpath = figure_relpath_obj.with_suffix(".png").as_posix()
245
+ metadata_entry = {
246
+ "figure_id": _coerce_to_str(figure.get("figure_id")),
247
+ "image_path": figure_image_relpath,
248
+ "description": _coerce_to_str(figure.get("description")),
249
+ }
250
+ figure_entries.append({**metadata_entry, "image": figure_image_relpath})
251
+ figure_metadata_json.append(json.dumps(metadata_entry, ensure_ascii=False))
 
252
 
253
  records.append(
254
  {
 
262
  "raw_response_path": doc.get("raw_response_path", ""),
263
  "source_image_path": doc.get("source_image_path", ""),
264
  "figures": figure_entries,
265
+ "figures_metadata": figure_metadata_json,
266
  }
267
  )
268
  return records
 
314
  output_dir,
315
  record.get("source_image_path")
316
  )
317
+
318
+ figure_images: List[str] = []
319
+ figure_metadata_json: List[str] = []
320
+
321
+ raw_figures = record.get("figures", []) or []
322
+ if isinstance(raw_figures, dict):
323
+ raw_figures = [raw_figures]
324
+
325
+ for figure in raw_figures:
326
+ raw_figure_path = _coerce_to_str(
327
+ (figure or {}).get("image")
328
+ or (figure or {}).get("image_path")
329
+ or (figure or {}).get("document_relative_path")
330
+ or (figure or {}).get("path")
331
+ )
332
  if not raw_figure_path:
333
  LOGGER.warning(
334
  "Skipping figure with missing image reference | sample=%s | figure=%s",
335
  sample_id or "<unknown>",
336
+ (figure or {}).get("figure_id"),
337
  )
338
  continue
339
 
340
+ resolved_path = _resolve_image_path(output_dir, raw_figure_path)
341
+ figure_images.append(resolved_path)
342
+
343
+ metadata_entry = {
344
+ "figure_id": _coerce_to_str((figure or {}).get("figure_id")),
345
+ "image_path": _coerce_to_str((figure or {}).get("image_path") or raw_figure_path),
346
+ "description": _coerce_to_str((figure or {}).get("description")),
347
+ }
348
+ figure_metadata_json.append(json.dumps(metadata_entry, ensure_ascii=False))
349
+
350
+ if not figure_images and record.get("figures_metadata"):
351
+ for metadata in record.get("figures_metadata", []):
352
+ parsed: Dict[str, Any]
353
+ if isinstance(metadata, str):
354
+ try:
355
+ parsed = json.loads(metadata)
356
+ except Exception:
357
+ LOGGER.warning(
358
+ "Unable to parse figure metadata JSON | sample=%s | value=%r",
359
+ sample_id or "<unknown>",
360
+ metadata,
361
+ )
362
+ continue
363
+ elif isinstance(metadata, dict):
364
+ parsed = metadata
365
+ else:
366
+ continue
367
+
368
+ raw_figure_path = _coerce_to_str(
369
+ parsed.get("image_path")
370
+ or parsed.get("image")
371
+ or ""
372
+ )
373
+ if not raw_figure_path:
374
+ continue
375
+ resolved_path = _resolve_image_path(output_dir, raw_figure_path)
376
+ figure_images.append(resolved_path)
377
+
378
+ normalized_metadata = {
379
+ "figure_id": _coerce_to_str(parsed.get("figure_id")),
380
+ "image_path": _coerce_to_str(parsed.get("image_path") or raw_figure_path),
381
+ "description": _coerce_to_str(parsed.get("description")),
382
  }
383
+ figure_metadata_json.append(json.dumps(normalized_metadata, ensure_ascii=False))
384
 
385
  normalized_records.append(
386
  {
 
401
  "document_with_boxes_image_path": document_with_boxes_image_path,
402
  "raw_response_path": _coerce_to_str(record.get("raw_response_path")),
403
  "source_image_path": source_image_path,
404
+ "figures": figure_images,
405
+ "figures_metadata": figure_metadata_json,
406
  }
407
  )
408
 
 
1066
  normalized: List[Dict[str, Any]] = []
1067
  for record in dataset_records:
1068
  figures = record.get("figures", []) or []
1069
+ figures_metadata = record.get("figures_metadata", []) or []
1070
+
1071
+ viewer_figures: List[Dict[str, Any]] = []
1072
+
1073
+ if figures_metadata:
1074
+ for metadata in figures_metadata:
1075
+ if isinstance(metadata, str):
1076
+ try:
1077
+ parsed = json.loads(metadata)
1078
+ except Exception:
1079
+ LOGGER.warning(
1080
+ "Failed to parse figures_metadata entry for viewer | sample=%s | value=%r",
1081
+ record.get("sample_id"),
1082
+ metadata,
1083
+ )
1084
+ continue
1085
+ elif isinstance(metadata, dict):
1086
+ parsed = metadata
1087
+ else:
1088
+ continue
1089
+
1090
+ viewer_figures.append(
1091
+ {
1092
+ "figure_id": str(parsed.get("figure_id", "")),
1093
+ "image_path": str(parsed.get("image_path", "")),
1094
+ "image": str(parsed.get("image") or parsed.get("image_path") or ""),
1095
+ "description": parsed.get("description", ""),
1096
+ "metadata_json": json.dumps(parsed, ensure_ascii=False),
1097
+ }
1098
+ )
1099
+ else:
1100
+ for fig in figures:
1101
+ metadata = {
1102
+ "figure_id": _coerce_to_str(fig.get("figure_id")),
1103
+ "image_path": _coerce_to_str(fig.get("image_path")),
1104
+ "description": _coerce_to_str(fig.get("description")),
1105
+ }
1106
+ viewer_figures.append(
1107
+ {
1108
+ "figure_id": metadata["figure_id"],
1109
+ "image_path": metadata["image_path"],
1110
+ "image": _coerce_to_str(fig.get("image") or fig.get("image_path")),
1111
+ "description": metadata["description"],
1112
+ "metadata_json": json.dumps(metadata, ensure_ascii=False),
1113
+ }
1114
+ )
1115
+
1116
  normalized.append(
1117
  {
1118
  "sample_id": str(record.get("sample_id", "")),
 
1120
  "document_markdown_path": str(record.get("document_markdown_path", "")),
1121
  "document_markdown_text": record.get("document_markdown_text", ""),
1122
  "document_with_boxes_image": record.get("document_with_boxes_image_path"),
1123
+ "figures": viewer_figures,
 
 
 
 
 
 
 
 
1124
  }
1125
  )
1126