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README.md
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---
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dataset_info:
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features:
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UniProt search (6/17/2025):
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(cc_scl_term_exp:SL-0086) OR (cc_scl_term_exp:SL-0191) OR (cc_scl_term_exp:SL-0243) OR (cc_scl_term_exp:SL-0162) OR (cc_scl_term_exp:SL-0173) OR (cc_scl_term_exp:SL-0209) OR (cc_scl_term_exp:SL-0095) OR (cc_scl_term_exp:SL-0272) OR (cc_scl_term_exp:SL-0158) OR (cc_scl_term_exp:SL-0132) OR (cc_scl_term_exp:SL-0204) OR (cc_scl_term_exp:SL-0049) OR (cc_scl_term_exp:SL-0041)
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Filtered for specific subcellular location terms:
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(1) Cytoplasm
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(2) Nucleus
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(3) Secreted
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(4) Membrane
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(5) Mitochondria
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(6) Plastid
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(7) Endoplasmic Reticulum
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(8) Vacuole
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(9) Lysosome
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(10) Golgi Apparatus
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(11) Peroxisome
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(12) Chloroplast
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(13) Cell Wall
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Curation steps:
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- Filtered for sequence length >=20 and <=2048
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- CD-HIT using Docker at 80% similarity threshold and n=5
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- Keep representative sequences
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- Parse subcellular locations into a clean list of labels (remove notes & ECO numbers)
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- Keep only examples with label in the location map (above)
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- Remove duplicates
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- Unique label list (assign 0 or 1 to a bitstring), convert to vector
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- Shuffle and split randomly into train, valid (1k), and test (1k)
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---
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dataset_info:
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features:
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