Update README.md

README.md

@@ -31,3 +31,17 @@ configs:
   - split: test
     path: data/test-*
 ---
+
+UniProt search (7/22/2025): * (Swiss-Prot reviewed entries only) download TSV with Taxonomic lineage (Ids), sequence, and length.
+
+Curation steps:
+
+Filtered for sequence length >=20 and <=2048
+Extract Taxonomic IDs (domain, kingdom, phylum, class, order, family, genus, species) from taxonomic_lineage_ids column
+Keep entry, genus, and sequence information
+Drop N/A
+CD-HIT using Docker at 80% similarity threshold and n=5
+Keep representative sequences
+Create labels based on spcecies
+Remove genuses/examples with fewer than 100 samples
+Stratified split: first get test set (5,000), then eval (5,000), rest is train