#!/usr/bin/env python3 """Count images/metadata and write data/manifests/inventory.json.""" from __future__ import annotations import json from collections import Counter from pathlib import Path ROOT = Path("/opt/dlami/nvme/workspace/skin_disease_classification") RAW = ROOT / "data/raw" OUT = ROOT / "data/manifests/inventory.json" IMG_EXT = {".jpg", ".jpeg", ".png", ".bmp", ".tif", ".tiff", ".webp"} def count_images(path: Path) -> int: if not path.exists(): return 0 n = 0 for p in path.rglob("*"): if p.is_file() and p.suffix.lower() in IMG_EXT: n += 1 return n def folder_classes(path: Path) -> dict[str, int]: if not path.exists(): return {} counts: Counter[str] = Counter() for p in path.rglob("*"): if p.is_file() and p.suffix.lower() in IMG_EXT: rel = p.relative_to(path) if len(rel.parts) > 1: counts[rel.parts[0]] += 1 return dict(sorted(counts.items())) def main() -> None: inv = { "skindisnet": { "images": count_images(RAW / "skindisnet"), "classes": folder_classes(RAW / "skindisnet"), }, "pad_ufes_20": { "images": count_images(RAW / "pad_ufes_20"), "metadata": str(RAW / "pad_ufes_20/metadata.csv"), }, "scin": { "images": count_images(RAW / "scin"), "cases_csv": str(RAW / "scin/dataset/scin_cases.csv"), "labels_csv": str(RAW / "scin/dataset/scin_labels.csv"), }, "fitzpatrick17k": { "images": count_images(RAW / "fitzpatrick17k"), "csv": str(RAW / "fitzpatrick17k/fitzpatrick17k.csv"), }, "ddi": { "images": count_images(RAW / "ddi"), }, "ham10000_isic2018_task3": { "images": count_images(RAW / "ham10000"), "metadata": str(RAW / "ham10000/HAM10000_metadata.tab"), }, "isic2016_task3": {"images": count_images(RAW / "isic2016")}, "isic2017_task3_labels_only": {"csvs": [p.name for p in (RAW / "isic2017").glob("*.csv")]}, "isic2019": {"images": count_images(RAW / "isic2019")}, "isic2020": { "images": count_images(RAW / "isic2020"), "csvs": [p.name for p in (RAW / "isic2020").glob("*.csv")], }, "isic2024": {"images": count_images(RAW / "isic2024")}, "milk10k": {"images": count_images(RAW / "milk10k")}, } OUT.parent.mkdir(parents=True, exist_ok=True) OUT.write_text(json.dumps(inv, indent=2)) print(json.dumps(inv, indent=2)) print("total_images", sum(v.get("images", 0) for v in inv.values() if isinstance(v, dict))) if __name__ == "__main__": main()