code/postereval/evaluate_semantic_ir.py

#!/usr/bin/env python3
"""Evaluate PosterEval semantic/content metrics from IR files.

Metric inputs:
- content IR: Order, Completeness, Claim F1.
- figure IR + poster PNG/JPEG: LTA.
"""

import argparse
import csv
import importlib
import json
import math
import re
import statistics
import sys
from pathlib import Path
from statistics import mean
from typing import Any, Dict, Iterable, List, Optional, Sequence, Tuple

from PIL import Image

from openrouter_client import call_openrouter_json


PROMPT_DIR = Path(__file__).resolve().parent / "prompts"
CLAIM_PROMPT = PROMPT_DIR / "claim_pair_scoring_prompt.md"
DEFAULT_CLAIM_MODE = "strict_v2_t05_subset_numeric_one_side85"
CLAIM_VARIANT = (
    "strict_v2_pair_scoring_plus_threshold_0_5_plus_greedy_one_to_one_plus_"
    "subset_numeric_plus_one_side_high_score_waiver_0_85"
)
DEFAULT_LTA_MODEL_PATH = "models/modelscope/Qwen__Qwen3-VL-Embedding-2B"
DEFAULT_IMAGE_NAMES = (
    "poster.png",
    "paper.png",
    "poster.jpg",
    "paper.jpg",
    "poster.jpeg",
    "paper.jpeg",
)


def normalize_key(text: str) -> str:
    return re.sub(r"[^a-z0-9]+", "", text.lower())


def extract_key(name: str, pattern: Optional[str]) -> str:
    if pattern:
        match = re.search(pattern, name)
        if match:
            return match.groupdict().get("key") or match.group(1)
    if re.fullmatch(r"\d+", name):
        return name
    return normalize_key(name)


def load_json(path: Path) -> Dict[str, Any]:
    return json.loads(path.read_text(encoding="utf-8"))


def discover_ir(root: Path, key_regex: Optional[str] = None) -> Dict[str, Dict[str, Any]]:
    mapping: Dict[str, Dict[str, Any]] = {}
    if not root.exists():
        return mapping

    candidates = []
    if (root / "poster_ir.json").exists():
        candidates.append(root / "poster_ir.json")
    candidates.extend(sorted(root.glob("*/poster_ir.json"), key=lambda p: str(p)))
    candidates.extend(sorted(root.glob("*.json"), key=lambda p: str(p)))

    for ir_path in candidates:
        if ir_path.name != "poster_ir.json" and ir_path.parent != root:
            continue
        source_name = ir_path.parent.name if ir_path.name == "poster_ir.json" else ir_path.stem
        key = extract_key(source_name, key_regex)
        if key in mapping:
            continue
        try:
            ir_relpath = str(ir_path.relative_to(root))
        except ValueError:
            ir_relpath = ir_path.name
        mapping[key] = {
            "source_name": source_name,
            "ir_path": ir_path,
            "ir_relpath": ir_relpath,
        }
    return mapping


def discover_images(
    root: Optional[Path],
    key_regex: Optional[str] = None,
    image_filename: Optional[str] = None,
) -> Dict[str, Path]:
    mapping: Dict[str, Path] = {}
    if root is None or not root.exists():
        return mapping

    for child in sorted(root.iterdir(), key=lambda p: p.name):
        if child.is_dir():
            names = (image_filename,) if image_filename else DEFAULT_IMAGE_NAMES
            image_path = None
            for name in names:
                if not name:
                    continue
                candidate = child / name
                if candidate.exists():
                    image_path = candidate
                    break
            if image_path is None:
                images = []
                for pattern in ("*.png", "*.jpg", "*.jpeg"):
                    images.extend(child.glob(pattern))
                image_path = sorted(images, key=lambda p: p.name)[0] if images else None
            if image_path is not None:
                mapping[extract_key(child.name, key_regex)] = image_path
        elif child.suffix.lower() in {".png", ".jpg", ".jpeg"}:
            mapping[extract_key(child.stem, key_regex)] = child
    return mapping


def build_prefix_aliases(keys: Iterable[str], min_chars: Optional[int]) -> Dict[str, str]:
    keys = sorted(set(keys))
    if not min_chars:
        return {key: key for key in keys}

    parent = {key: key for key in keys}

    def find(key: str) -> str:
        while parent[key] != key:
            parent[key] = parent[parent[key]]
            key = parent[key]
        return key

    def union(left: str, right: str) -> None:
        root_left = find(left)
        root_right = find(right)
        if root_left != root_right:
            parent[root_right] = root_left

    for index, key_a in enumerate(keys):
        for key_b in keys[index + 1 :]:
            if min(len(key_a), len(key_b)) < min_chars:
                continue
            if key_a.startswith(key_b) or key_b.startswith(key_a):
                union(key_a, key_b)

    groups: Dict[str, List[str]] = {}
    for key in keys:
        groups.setdefault(find(key), []).append(key)

    aliases = {}
    for group in groups.values():
        representative = max(group, key=lambda item: (len(item), item))
        for key in group:
            aliases[key] = representative
    return aliases


def apply_aliases(mapping: Dict[str, Any], aliases: Dict[str, str]) -> Dict[str, Any]:
    aliased: Dict[str, Any] = {}
    for key, value in mapping.items():
        alias = aliases.get(key, key)
        aliased.setdefault(alias, value)
    return aliased


def parse_bbox_xyxy(value: Any) -> Optional[Tuple[float, float, float, float]]:
    if isinstance(value, (list, tuple)) and len(value) >= 4:
        try:
            return float(value[0]), float(value[1]), float(value[2]), float(value[3])
        except (TypeError, ValueError):
            return None
    if isinstance(value, str):
        numbers = re.findall(r"-?\d+(?:\.\d+)?", value)
        if len(numbers) >= 4:
            try:
                return tuple(float(numbers[i]) for i in range(4))  # type: ignore[return-value]
            except ValueError:
                return None
    return None


def sort_sections_column_first(sections: List[Dict[str, Any]]) -> List[Dict[str, Any]]:
    parsed = []
    fallback = []
    for index, section in enumerate(sections):
        bbox = parse_bbox_xyxy(section.get("bbox"))
        if bbox is None:
            fallback.append((index, section))
            continue
        x1, y1, _, _ = bbox
        parsed.append((index, x1, y1, section))

    if not parsed:
        return sections

    x_values = sorted(item[1] for item in parsed)
    column_threshold = 100.0
    if len(x_values) >= 2:
        gaps = [x_values[i + 1] - x_values[i] for i in range(len(x_values) - 1)]
        positive_gaps = [gap for gap in gaps if gap > 1e-6]
        if positive_gaps:
            median_gap = statistics.median(positive_gaps)
            column_threshold = max(40.0, min(150.0, median_gap * 0.6))

    parsed.sort(key=lambda item: item[1])
    columns: List[List[Tuple[int, float, float, Dict[str, Any]]]] = []
    current: List[Tuple[int, float, float, Dict[str, Any]]] = []
    current_x: Optional[float] = None
    for item in parsed:
        _, x1, _, _ = item
        if current_x is None or abs(x1 - current_x) <= column_threshold:
            current.append(item)
            current_x = x1 if current_x is None else statistics.fmean([e[1] for e in current])
        else:
            columns.append(current)
            current = [item]
            current_x = x1
    if current:
        columns.append(current)

    ordered: List[Dict[str, Any]] = []
    for column in columns:
        column.sort(key=lambda item: (item[2], item[1], item[0]))
        ordered.extend(item[3] for item in column)
    ordered.extend(section for _, section in sorted(fallback, key=lambda item: item[0]))
    return ordered


def compute_order_and_completeness(ir_data: Dict[str, Any]) -> Dict[str, Any]:
    sections = list(ir_data.get("sections", []))
    if not sections:
        return {
            "order": None,
            "completeness": None,
            "gnc_compat": None,
            "inversions": 0,
            "total_pairs": 0,
            "missing_roles": ["Approach", "Evidence", "Problem"],
        }

    def role(section: Dict[str, Any]) -> Optional[str]:
        return section.get("meta_role") or section.get("role")

    if all("reading_order" in section for section in sections):
        sections = sorted(sections, key=lambda item: item["reading_order"])
    else:
        sections = sort_sections_column_first(sections)

    role_order = {"Meta": 0, "Problem": 1, "Approach": 2, "Evidence": 3}
    narrative_sections = [section for section in sections if role(section) != "Meta"]

    inversions = 0
    total_pairs = 0
    for left_index, left in enumerate(narrative_sections):
        for right in narrative_sections[left_index + 1 :]:
            total_pairs += 1
            if role_order.get(role(left) or "Other", 2) > role_order.get(role(right) or "Other", 2):
                inversions += 1

    order_score = 1.0 - inversions / total_pairs if total_pairs > 0 else 1.0
    required_roles = {"Problem", "Approach", "Evidence"}
    present_roles = {role(section) for section in narrative_sections if role(section) in required_roles}
    missing_roles = sorted(required_roles - present_roles)
    completeness = 1.0 - len(missing_roles) / len(required_roles)
    return {
        "order": round(order_score, 4),
        "completeness": round(completeness, 4),
        "gnc_compat": round(0.6 * order_score + 0.4 * completeness, 4),
        "inversions": inversions,
        "total_pairs": total_pairs,
        "missing_roles": missing_roles,
    }


def extract_numeric_values(text: str) -> List[float]:
    values = []
    for raw in re.findall(r"(?<![A-Za-z0-9])\d[\d,]*(?:\.\d+)?%?(?![A-Za-z])", text or ""):
        token = raw.replace(",", "")
        if token.endswith("%"):
            token = token[:-1]
        try:
            values.append(float(token))
        except ValueError:
            continue
    return values


def numbers_match_within_tolerance_subset(
    left: str,
    right: str,
    rel_tol: float = 0.01,
) -> bool:
    left_values = extract_numeric_values(left)
    right_values = extract_numeric_values(right)

    if not left_values and not right_values:
        return True
    if not left_values or not right_values:
        return False

    smaller, larger = (
        (sorted(left_values), sorted(right_values))
        if len(left_values) <= len(right_values)
        else (sorted(right_values), sorted(left_values))
    )
    used_indices: set[int] = set()
    for target in smaller:
        best_index = None
        best_gap = None
        for index, candidate in enumerate(larger):
            if index in used_indices:
                continue
            scale = max(abs(target), abs(candidate), 1.0)
            gap = abs(target - candidate)
            if gap <= rel_tol * scale and (best_gap is None or gap < best_gap):
                best_index = index
                best_gap = gap
        if best_index is None:
            return False
        used_indices.add(best_index)
    return True


def harmonic_mean(precision: float, recall: float) -> float:
    if precision + recall == 0:
        return 0.0
    return 2.0 * precision * recall / (precision + recall)


def score_claim_pairs(
    gen_claims: Sequence[str],
    gt_claims: Sequence[str],
    model: str,
    match_mode: str,
) -> Tuple[int, List[Dict[str, Any]], str]:
    if match_mode not in {DEFAULT_CLAIM_MODE, "default"}:
        raise ValueError(
            "Only the strict_v2_t05_subset_numeric_one_side85 Claim F1 policy is included."
        )

    if not gen_claims or not gt_claims:
        return 0, [], CLAIM_VARIANT

    candidate_pairs = [
        {"gen_id": gi, "gt_id": ti, "gen_claim": gc, "gt_claim": tc}
        for gi, gc in enumerate(gen_claims)
        for ti, tc in enumerate(gt_claims)
    ]
    prompt = CLAIM_PROMPT.read_text(encoding="utf-8")
    prompt = prompt.replace(
        "{generated_claims_json}",
        json.dumps(list(gen_claims), indent=2, ensure_ascii=False),
    )
    prompt = prompt.replace(
        "{ground_truth_claims_json}",
        json.dumps(list(gt_claims), indent=2, ensure_ascii=False),
    )
    prompt = prompt.replace(
        "{candidate_pairs_json}",
        json.dumps(candidate_pairs, indent=2, ensure_ascii=False),
    )
    result = call_openrouter_json(
        prompt=prompt,
        model=model,
        image_path=None,
        max_tokens=2000,
        temperature=0.1,
        response_format_json=True,
    )
    if result.get("parse_error"):
        return 0, [], "claim_pair_scoring_parse_error"

    filtered: List[Tuple[float, int, int, str]] = []
    for proposal in result.get("pair_scores", []):
        if not isinstance(proposal, dict):
            continue
        try:
            gen_id = int(proposal["gen_id"])
            gt_id = int(proposal["gt_id"])
            score = float(proposal["score"])
        except (KeyError, TypeError, ValueError):
            continue
        if not (0 <= gen_id < len(gen_claims) and 0 <= gt_id < len(gt_claims)):
            continue
        if score < 0.5:
            continue

        gen_claim = gen_claims[gen_id]
        gt_claim = gt_claims[gt_id]
        if numbers_match_within_tolerance_subset(gen_claim, gt_claim):
            filtered.append((score, gen_id, gt_id, "subset_numeric"))
            continue
        gen_has_numbers = bool(extract_numeric_values(gen_claim))
        gt_has_numbers = bool(extract_numeric_values(gt_claim))
        if gen_has_numbers != gt_has_numbers and score >= 0.85:
            filtered.append((score, gen_id, gt_id, "one_side_high_score_waiver"))

    filtered.sort(key=lambda item: (-item[0], item[1], item[2]))
    matched_gen: set[int] = set()
    matched_gt: set[int] = set()
    selected: Dict[int, Tuple[int, float, str]] = {}
    for score, gen_id, gt_id, numeric_rule in filtered:
        if gen_id in matched_gen or gt_id in matched_gt:
            continue
        matched_gen.add(gen_id)
        matched_gt.add(gt_id)
        selected[gen_id] = (gt_id, score, numeric_rule)

    matches = []
    for gen_id, gen_claim in enumerate(gen_claims):
        if gen_id in selected:
            gt_id, score, numeric_rule = selected[gen_id]
            matches.append(
                {
                    "gen_claim": gen_claim,
                    "gt_claim": gt_claims[gt_id],
                    "matched": True,
                    "score": round(score, 4),
                    "numeric_rule": numeric_rule,
                }
            )
        else:
            matches.append(
                {
                    "gen_claim": gen_claim,
                    "gt_claim": None,
                    "matched": False,
                    "score": 0.0,
                    "numeric_rule": None,
                }
            )
    return len(selected), matches, CLAIM_VARIANT


def compute_claim_f1(
    gen_ir: Dict[str, Any],
    gt_ir: Dict[str, Any],
    model: str,
    match_mode: str,
) -> Dict[str, Any]:
    gen_claims = list(gen_ir.get("atomic_claims", []))
    gt_claims = list(gt_ir.get("atomic_claims", []))

    if not gen_claims and not gt_claims:
        precision = recall = 1.0
        matched = 0
        matches: List[Dict[str, Any]] = []
        variant = CLAIM_VARIANT
        empty_case = "empty_claim_lists"
    elif not gen_claims:
        precision = 1.0
        recall = 0.0
        matched = 0
        matches = []
        variant = CLAIM_VARIANT
        empty_case = "empty_generated_claims"
    elif not gt_claims:
        precision = recall = 1.0
        matched = 0
        matches = []
        variant = CLAIM_VARIANT
        empty_case = "empty_ground_truth_claims"
    else:
        matched, matches, variant = score_claim_pairs(gen_claims, gt_claims, model, match_mode)
        precision = matched / len(gen_claims)
        recall = matched / len(gt_claims)
        empty_case = ""

    return {
        "claim_precision": round(precision, 4),
        "claim_recall": round(recall, 4),
        "claim_f1": round(harmonic_mean(precision, recall), 4),
        "matched_count": matched,
        "gen_claims_count": len(gen_claims),
        "gt_claims_count": len(gt_claims),
        "matching_variant": variant,
        "claim_empty_case": empty_case,
        "claim_matches": matches,
    }


def crop_figure_from_poster(poster_img: Image.Image, bbox: Any) -> Optional[Image.Image]:
    coords = parse_bbox_xyxy(bbox)
    if coords is None:
        return None
    x1, y1, x2, y2 = coords
    width, height = poster_img.size
    max_coord = max(abs(x1), abs(y1), abs(x2), abs(y2))
    if 0 < max_coord <= 1.0:
        x1, y1, x2, y2 = x1 * width, y1 * height, x2 * width, y2 * height
    elif max_coord <= 1000.0:
        x1, y1, x2, y2 = x1 * width / 1000.0, y1 * height / 1000.0, x2 * width / 1000.0, y2 * height / 1000.0
    if x2 <= x1 or y2 <= y1:
        return None
    x1 = max(0, min(int(round(x1)), width - 1))
    y1 = max(0, min(int(round(y1)), height - 1))
    x2 = max(0, min(int(round(x2)), width))
    y2 = max(0, min(int(round(y2)), height))
    if x2 <= x1 or y2 <= y1:
        return None
    return poster_img.crop((x1, y1, x2, y2))


class LTAEvaluator:
    def __init__(self, model_path: str, module_dir: Optional[str] = None):
        search_dir = Path(module_dir).expanduser() if module_dir else Path(__file__).resolve().parent
        sys.path.insert(0, str(search_dir))
        module = importlib.import_module("qwen3_vl_embedding")
        self.embedder = module.Qwen3VLEmbedder(model_name_or_path=model_path)

    def compute_batch_similarity(self, texts: List[str], images: List[Image.Image]) -> List[float]:
        rgb_images = [image.convert("RGB") if image.mode != "RGB" else image for image in images]
        text_embeddings = self.embedder.process([{"text": text} for text in texts])
        image_embeddings = self.embedder.process([{"image": image} for image in rgb_images])
        return [float(text_embeddings[i] @ image_embeddings[i]) for i in range(len(texts))]


def compute_lta(
    ir_data: Dict[str, Any],
    poster_image_path: Path,
    evaluator: LTAEvaluator,
) -> Dict[str, Any]:
    poster_img = Image.open(poster_image_path)
    if poster_img.mode != "RGB":
        poster_img = poster_img.convert("RGB")

    tasks = []
    details = {
        "total_figures": 0,
        "high_similarity": 0,
        "medium_similarity": 0,
        "low_similarity": 0,
        "skipped": 0,
        "figure_scores": [],
    }
    for section in ir_data.get("sections", []):
        section_text = section.get("text_content", "") or ""
        if not section_text:
            continue
        for figure in section.get("contains_figures", []) or section.get("figures", []):
            cropped = crop_figure_from_poster(poster_img, figure.get("bbox"))
            if cropped is None:
                details["skipped"] += 1
                continue
            tasks.append(
                {
                    "figure_id": figure.get("id", "Figure"),
                    "section_title": section.get("title", "Untitled Section"),
                    "section_text": section_text,
                    "image": cropped,
                }
            )

    if not tasks:
        return {"lta": 1.0, "lta_details": details}

    similarities = evaluator.compute_batch_similarity(
        [task["section_text"][:800] for task in tasks],
        [task["image"] for task in tasks],
    )
    for task, similarity in zip(tasks, similarities):
        details["total_figures"] += 1
        if similarity >= 0.5:
            details["high_similarity"] += 1
        elif similarity >= 0.3:
            details["medium_similarity"] += 1
        else:
            details["low_similarity"] += 1
        details["figure_scores"].append(
            {
                "figure_id": task["figure_id"],
                "section_title": task["section_title"],
                "similarity": round(float(similarity), 4),
            }
        )
    return {"lta": round(float(mean(similarities)), 4), "lta_details": details}


def mean_or_none(values: List[Optional[float]]) -> Optional[float]:
    valid = [value for value in values if value is not None and not math.isnan(value)]
    return mean(valid) if valid else None


def fmt(value: Optional[float]) -> str:
    return "NA" if value is None else f"{value:.4f}"


def evaluate_method(
    method_name: str,
    method_spec: Dict[str, Any],
    gt_content: Dict[str, Dict[str, Any]],
    keys: List[str],
    metrics: set[str],
    claim_model: str,
    claim_mode: str,
    lta_evaluator: Optional[LTAEvaluator],
    include_paths: bool,
    aliases: Dict[str, str],
) -> List[Dict[str, Any]]:
    content_root = Path(method_spec["content_ir_root"]).expanduser()
    figure_root = Path(method_spec.get("figure_ir_root", "")).expanduser() if method_spec.get("figure_ir_root") else None
    image_root = Path(method_spec.get("poster_image_root", "")).expanduser() if method_spec.get("poster_image_root") else None

    gen_content = apply_aliases(discover_ir(content_root, method_spec.get("key_regex")), aliases)
    gen_figure = apply_aliases(discover_ir(figure_root, method_spec.get("key_regex")), aliases) if figure_root else {}
    images = apply_aliases(
        discover_images(image_root, method_spec.get("key_regex"), method_spec.get("image_filename")),
        aliases,
    )

    rows = []
    for key in keys:
        row: Dict[str, Any] = {"method": method_name, "key": key, "error": ""}
        try:
            content_item = gen_content.get(key)
            gt_item = gt_content.get(key)
            gen_ir = load_json(content_item["ir_path"]) if content_item else None
            gt_ir = load_json(gt_item["ir_path"]) if gt_item else None

            if {"order", "completeness"} & metrics:
                if gen_ir is None:
                    row["order"] = None
                    row["completeness"] = None
                    row["order_error"] = "missing content IR"
                else:
                    order_payload = compute_order_and_completeness(gen_ir)
                    row.update(order_payload)

            if "claim_f1" in metrics:
                if gen_ir is None or gt_ir is None:
                    row["claim_f1"] = None
                    row["claim_error"] = "missing generated or ground-truth content IR"
                else:
                    row.update(compute_claim_f1(gen_ir, gt_ir, claim_model, claim_mode))

            if "lta" in metrics:
                figure_item = gen_figure.get(key)
                image_path = images.get(key)
                if lta_evaluator is None:
                    row["lta"] = None
                    row["lta_error"] = "LTA evaluator was not initialized"
                elif figure_item is None or image_path is None:
                    row["lta"] = None
                    row["lta_error"] = "missing figure IR or poster image"
                else:
                    row.update(compute_lta(load_json(figure_item["ir_path"]), image_path, lta_evaluator))

            if include_paths:
                if content_item:
                    row["content_ir_path"] = str(content_item["ir_path"])
                if gt_item:
                    row["gt_content_ir_path"] = str(gt_item["ir_path"])
                if gen_figure.get(key):
                    row["figure_ir_path"] = str(gen_figure[key]["ir_path"])
                if images.get(key):
                    row["poster_image_path"] = str(images[key])
        except Exception as exc:
            row["error"] = repr(exc)
        rows.append(row)
    return rows


def summarize(rows: List[Dict[str, Any]], metrics: set[str]) -> Dict[str, Any]:
    summary: Dict[str, Any] = {
        "n_rows": len(rows),
        "errors": [row for row in rows if row.get("error")],
    }
    for metric in ("order", "completeness", "lta", "claim_f1"):
        if metric not in metrics:
            continue
        values = [row.get(metric) for row in rows]
        valid = [value for value in values if isinstance(value, (int, float)) and not math.isnan(float(value))]
        summary[metric] = round(float(mean(valid)), 4) if valid else None
        summary[metric + "_n"] = len(valid)
    return summary


def write_markdown(summary: Dict[str, Any], path: Path) -> None:
    metrics = summary["metrics"]
    lines = ["# PosterEval Semantic IR Results", ""]
    lines.append("IR policy: content IR for Order/Completeness/Claim F1; figure IR for LTA.")
    lines.append("")
    lines.append("| Method | " + " | ".join(metric for metric in metrics) + " |")
    lines.append("|---|" + "|".join("---:" for _ in metrics) + "|")
    for method in summary["method_order"]:
        stats = summary["methods"].get(method)
        if not stats:
            continue
        lines.append(
            "| "
            + method
            + " | "
            + " | ".join(fmt(stats.get(metric)) for metric in metrics)
            + " |"
        )
    lines.append("")
    lines.append("Valid sample counts:")
    for method in summary["method_order"]:
        stats = summary["methods"].get(method)
        if not stats:
            continue
        count_text = ", ".join(f"{metric}={stats.get(metric + '_n', 0)}" for metric in metrics)
        lines.append(f"- `{method}`: {count_text}")
    path.write_text("\n".join(lines).rstrip() + "\n", encoding="utf-8")


def clean_json(value: Any) -> Any:
    if isinstance(value, float):
        if math.isnan(value) or math.isinf(value):
            return None
        return value
    if isinstance(value, dict):
        return {key: clean_json(item) for key, item in value.items()}
    if isinstance(value, list):
        return [clean_json(item) for item in value]
    return value


def run(config: Dict[str, Any], output_dir: Path, include_paths: bool) -> None:
    metrics = set(config.get("metrics", ["order", "completeness", "lta", "claim_f1"]))
    if "all" in metrics:
        metrics = {"order", "completeness", "lta", "claim_f1"}
    method_order = config.get("method_order") or list(config["methods"].keys())

    gt_spec = config["gt"]
    gt_content_raw = discover_ir(Path(gt_spec["content_ir_root"]).expanduser(), gt_spec.get("key_regex"))
    all_keys = set(gt_content_raw.keys())
    per_method_content = {}
    for method in method_order:
        method_spec = config["methods"][method]
        mapping = discover_ir(Path(method_spec["content_ir_root"]).expanduser(), method_spec.get("key_regex"))
        per_method_content[method] = mapping
        all_keys.update(mapping.keys())
    aliases = build_prefix_aliases(all_keys, config.get("prefix_alias_min_chars"))

    if config.get("common_only", True):
        key_sets = [{aliases.get(key, key) for key in gt_content_raw.keys()}]
        for method in method_order:
            key_sets.append({aliases.get(key, key) for key in per_method_content[method].keys()})
        keys = sorted(set.intersection(*key_sets)) if key_sets else []
    else:
        keys = sorted({aliases.get(key, key) for key in all_keys})

    gt_content = apply_aliases(gt_content_raw, aliases)

    lta_evaluator = None
    if "lta" in metrics:
        lta_cfg = config.get("lta", {})
        lta_evaluator = LTAEvaluator(
            model_path=lta_cfg.get("model_path", DEFAULT_LTA_MODEL_PATH),
            module_dir=lta_cfg.get("module_dir"),
        )

    all_rows = []
    method_summaries = {}
    for method in method_order:
        rows = evaluate_method(
            method_name=method,
            method_spec=config["methods"][method],
            gt_content=gt_content,
            keys=keys,
            metrics=metrics,
            claim_model=config.get("claim_model", "qwen3-vl-235b"),
            claim_mode=config.get("claim_match_mode", DEFAULT_CLAIM_MODE),
            lta_evaluator=lta_evaluator,
            include_paths=include_paths,
            aliases=aliases,
        )
        all_rows.extend(rows)
        method_summaries[method] = summarize(rows, metrics)

    output_dir.mkdir(parents=True, exist_ok=True)
    summary = {
        "run_name": config.get("run_name", "postereval_semantic_ir"),
        "metrics": [metric for metric in ("order", "completeness", "lta", "claim_f1") if metric in metrics],
        "ir_policy": {
            "order": "content_ir",
            "completeness": "content_ir",
            "claim_f1": "content_ir",
            "lta": "figure_ir + poster image",
        },
        "claim_match_mode": config.get("claim_match_mode", DEFAULT_CLAIM_MODE),
        "method_order": method_order,
        "n_keys": len(keys),
        "methods": method_summaries,
    }
    (output_dir / "summary.json").write_text(
        json.dumps(clean_json(summary), ensure_ascii=False, indent=2) + "\n",
        encoding="utf-8",
    )
    write_markdown(clean_json(summary), output_dir / "summary.md")

    fieldnames = sorted({key for row in all_rows for key in row.keys()})
    with (output_dir / "per_paper.csv").open("w", encoding="utf-8", newline="") as handle:
        writer = csv.DictWriter(handle, fieldnames=fieldnames)
        writer.writeheader()
        for row in sorted(all_rows, key=lambda item: (item["method"], item["key"])):
            writer.writerow(clean_json(row))
    (output_dir / "per_paper.json").write_text(
        json.dumps(clean_json(all_rows), ensure_ascii=False, indent=2) + "\n",
        encoding="utf-8",
    )


def parse_args() -> argparse.Namespace:
    parser = argparse.ArgumentParser(description="Evaluate semantic/content metrics from PosterEval IR.")
    parser.add_argument("--config", required=True, help="JSON config file.")
    parser.add_argument("--output-dir", required=True, help="Directory for result files.")
    parser.add_argument(
        "--include-paths",
        action="store_true",
        help="Include absolute local paths in outputs. Keep off for anonymous artifacts.",
    )
    return parser.parse_args()


def main() -> None:
    args = parse_args()
    run(json.loads(Path(args.config).read_text(encoding="utf-8")), Path(args.output_dir), args.include_paths)


if __name__ == "__main__":
    main()