Initial commit of CROssBARv2-KG dataset
Browse files- .gitattributes +22 -0
- README.md +146 -0
- edges/CTI.csv +3 -0
- edges/DDI.csv +3 -0
- edges/DGI.csv +3 -0
- edges/DTI.csv +0 -0
- edges/Disease_hiererchical_edges.csv +0 -0
- edges/Disease_to_disease_association_edge.csv +0 -0
- edges/Disease_to_disease_comorbidity_edge.csv +0 -0
- edges/Disease_to_drug_edge.csv +0 -0
- edges/Disease_to_pathway.csv +0 -0
- edges/Domain_to_go.csv +0 -0
- edges/Drug_to_pathway.csv +0 -0
- edges/Drug_to_side_effect.csv +3 -0
- edges/Ec_hierarchy.csv +0 -0
- edges/Gene_encodes_protein.csv +3 -0
- edges/Gene_to_disease_edge.csv +3 -0
- edges/Go_to_go.csv +0 -0
- edges/Organism_to_disease_edge.csv +1064 -0
- edges/Orthology.csv +0 -0
- edges/PPI.csv +3 -0
- edges/Pathway_orthology.csv +3 -0
- edges/Pathway_to_pathway.csv +653 -0
- edges/Phenotype_hierarchical_edges.csv +0 -0
- edges/Phenotype_to_disease.csv +0 -0
- edges/Protein_belongs_to_organism.csv +3 -0
- edges/Protein_has_domain.csv +3 -0
- edges/Protein_to_ec.csv +0 -0
- edges/Protein_to_go.csv +3 -0
- edges/Protein_to_pathway.csv +0 -0
- edges/Protein_to_phenotype.csv +0 -0
- edges/Reactome_hierarchical_edges.csv +0 -0
- edges/Side_effect_hierarchy.csv +0 -0
- edges/Tf_gene_edges.csv +0 -0
- nodes/Biological_process.csv +3 -0
- nodes/Cellular_component.csv +3 -0
- nodes/Compound.csv +3 -0
- nodes/Disease.csv +0 -0
- nodes/Domain.csv +3 -0
- nodes/Drug.csv +0 -0
- nodes/Ec.csv +3 -0
- nodes/Gene.csv +3 -0
- nodes/Molecular_function.csv +3 -0
- nodes/Organism.csv +3 -0
- nodes/Pathway.csv +3 -0
- nodes/Phenotype.csv +3 -0
- nodes/Protein.csv +3 -0
- nodes/Side_effect.csv +0 -0
.gitattributes
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# Video files - compressed
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*.mp4 filter=lfs diff=lfs merge=lfs -text
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*.webm filter=lfs diff=lfs merge=lfs -text
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# Video files - compressed
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*.mp4 filter=lfs diff=lfs merge=lfs -text
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*.webm filter=lfs diff=lfs merge=lfs -text
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edges/Pathway_orthology.csv filter=lfs diff=lfs merge=lfs -text
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edges/Gene_to_disease_edge.csv filter=lfs diff=lfs merge=lfs -text
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nodes/Cellular_component.csv filter=lfs diff=lfs merge=lfs -text
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nodes/Protein.csv filter=lfs diff=lfs merge=lfs -text
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nodes/Phenotype.csv filter=lfs diff=lfs merge=lfs -text
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nodes/Pathway.csv filter=lfs diff=lfs merge=lfs -text
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edges/Drug_to_side_effect.csv filter=lfs diff=lfs merge=lfs -text
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edges/DGI.csv filter=lfs diff=lfs merge=lfs -text
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nodes/Ec.csv filter=lfs diff=lfs merge=lfs -text
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nodes/Compound.csv filter=lfs diff=lfs merge=lfs -text
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edges/PPI.csv filter=lfs diff=lfs merge=lfs -text
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nodes/Gene.csv filter=lfs diff=lfs merge=lfs -text
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nodes/Biological_process.csv filter=lfs diff=lfs merge=lfs -text
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edges/DDI.csv filter=lfs diff=lfs merge=lfs -text
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nodes/Molecular_function.csv filter=lfs diff=lfs merge=lfs -text
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edges/Protein_has_domain.csv filter=lfs diff=lfs merge=lfs -text
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edges/Protein_belongs_to_organism.csv filter=lfs diff=lfs merge=lfs -text
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nodes/Organism.csv filter=lfs diff=lfs merge=lfs -text
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edges/Protein_to_go.csv filter=lfs diff=lfs merge=lfs -text
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nodes/Domain.csv filter=lfs diff=lfs merge=lfs -text
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edges/Gene_encodes_protein.csv filter=lfs diff=lfs merge=lfs -text
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edges/CTI.csv filter=lfs diff=lfs merge=lfs -text
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README.md
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| 1 |
+
---
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dataset_name: "CROssBARv2-KG"
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tags:
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- biomedical
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- knowledge-graph
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- bioinformatics
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- biology
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- chemistry
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- systems-biology
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task_categories:
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- graph-construction
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- link-prediction
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- node-classification
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- graph-ml
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pretty_name: "CROssBARv2 Knowledge Graph Dataset"
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language:
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- en
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size_categories:
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- 10M<n<100M
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---
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# CROssBARv2-KG
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This repository provides the dataset for the CROssBARv2 Knowledge Graph (KG), a heterogeneous and general-purpose biomedical KG-based system.
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The CROssBARv2 KG comprises approximately **2.7 million** nodes spanning **14 distinct node types** and around **12.6 million edges** representing **51 different edge types**, all integrated from **34 biological data sources**. We also incorporated several ontologies (e.g., Gene Ontology, Mondo Disease Ontology) along with rich metadata captured as node and edge properties.
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Building upon this foundation, we further enhanced the semantic depth of CROssBARv2. This was achieved by generating and storing embeddings for key biological entities, such as proteins, drugs, and Gene Ontology terms. These embeddings are managed using the native [vector index](https://neo4j.com/developer/genai-ecosystem/vector-search/) feature in Neo4j, enabling powerful semantic similarity searches.
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# Data
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The dataset is organized into two primary directories:
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- [**`nodes/`**](./nodes): Contains CSV files defining the biological entities.
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- [**`edges/`**](./edges): Contains CSV files defining the relationships between these entities.
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## nodes
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Each file corresponds to a specific biological entity type and contains a primary identifier column that provides a unique ID along with additional metadata fields. Identifiers follow the **Compact URI (CURIE)** standard (e.g., `uniprot:Q9H161`) as defined in the [Bioregistry](https://bioregistry.io/).
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The table below lists the primary identifier column name for each node file:
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| **File** | **ID Column Name** |
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| :--- | :--- |
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| Cellular_component.csv | id |
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| Biological_process.csv | id |
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| Molecular_function.csv | id |
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| Protein.csv | id |
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| Phenotype.csv | hpo_id |
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| Pathway.csv | pathway_id |
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| Ec.csv | ec_number |
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| Compound.csv | compound_id |
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| Gene.csv | id |
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| Side_effect.csv | meddra_id |
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| Drug.csv | drugbank_id |
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| Drug.csv | drugbank_id |
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| Organism.csv | id |
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| Domain.csv | id |
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| Disease.csv | disease_id |
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The following table demonstrates the CURIE format used for each node type within the KG:
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| **Node Type** | **CURIE** |
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|--------------------------------------------------|------------------------|
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| Protein | uniprot:Q9H161 |
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| Gene | ncbigene:60529 |
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| OrganismTaxon | ncbitaxon:9606 |
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| ProteinDomain | interpro:IPR000001 |
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| Drug | drugbank:DB00821 |
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| Compound | chembl:CHEMBL6228 |
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| GOTerm (BiologicalProcess, MolecularFunction, CellularComponent) | go:0016072 |
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| Disease | mondo:0054666 |
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| Phenotype | hp:0000012 |
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| SideEffect | meddra:10073487 |
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| EcNumber | eccode:1.1.1.- |
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## edges
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Each file represents a relationship between two biological entity types in the KG.
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Every edge file contains **source** and **target** columns, which specify the identifiers of the nodes being linked.
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Other columns serve as metadata for the relationship.
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The table below lists the filename along with the source and target identifier column names and a description of the edge type:
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| **File** | **Source Column** | **Target Column** | **Description** |
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| :--- | :--- | :--- | :--- |
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| Pathway_orthology.csv | pathway1_id | pathway2_id | Evolutionarily conserved pathway relationship |
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| Go_to_go.csv | source | target | Hierarchical or regulatory connection between functional terms |
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| Gene_to_disease_edge.csv | gene_id | disease_id | <p>Gene-disease link via expression or function<br> Genetic variant linked to disease risk/pathology<p> |
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| Ec_hierarchy.csv | child_id | parent_id | Hierarchical classification of enzyme functions |
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| Disease_to_drug_edge.csv | disease_id | drug_id | Therapeutic intervention with a drug |
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| DTI.csv | drugbank_id | uniprot_id | Direct target binding or modulation |
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| Phenotype_hierarchical_edges.csv | child_id | parent_id | Hierarchical classification of phenotypes |
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| Protein_to_phenotype.csv | protein_id | hpo_id | Protein involvement in a phenotypic condition |
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| Drug_to_side_effect.csv | drugbank_id | meddra_id | Associated adverse effect of a drug |
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| Disease_to_disease_comorbidity_edge.csv | disease1 | disease2 | Comorbid occurrence in patients |
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| DGI.csv | entrez_id | drugbank_id | Positive/negative regulation of gene expression |
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| Drug_to_pathway.csv | drug_id | pathway_id | Target involvement in a biological pathway |
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| PPI.csv | uniprot_a | uniprot_b | Physical/functional protein-protein association |
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| Disease_to_disease_association_edge.csv | disease_id1 | disease_id2 | Statistical or mechanistic disease link |
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| Phenotype_to_disease.csv | hpo_id | disease_id | Disease-related clinical trait |
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| Orthology.csv | entrez_a | entrez_b | Evolutionary relationship between genes |
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| Side_effect_hierarchy.csv | child_id | parent_id | Hierarchical classification of side effects |
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| Organism_to_disease_edge.csv | organism_id | disease_id | Pathogen-induced disease etiology |
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| DDI.csv | drug1 | drug2 | Pharmacological or biochemical interaction |
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| Protein_to_ec.csv | protein_id | ec_id | Enzymatic reaction catalysis |
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| Reactome_hierarchical_edges.csv | child_id | parent_id | Hierarchical or functional pathway connection |
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| Tf_gene_edges.csv | tf | target | Regulatory influence on gene expression |
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| Disease_hiererchical_edges.csv | child_id | parent_id | Hierarchical classification of diseases |
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| Protein_to_pathway.csv | uniprot_id | pathway_id | Functional participation in a biological pathway |
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| Protein_has_domain.csv | source_id | target_id | Protein contains structural/functional domain |
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| Protein_belongs_to_organism.csv | source_id | target_id | Protein origin specific to an organism |
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| Protein_to_go.csv | source | target | Molecular activity performed by protein / Cellular component localization / Biological role or process involvement |
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| Pathway_to_pathway.csv | pathway_id1 | pathway_id2 | Hierarchical or functional pathway connection |
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| Gene_encodes_protein.csv | source_id | target_id | Genetic encoding of a protein product |
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| Disease_to_pathway.csv | disease_id | pathway_id | Regulation of biological pathway activity |
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| Domain_to_go.csv | source | target | Functional role enabled by domain / Structural or localization role of domain / Biological role or process involvement of domain |
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| CTI.csv | chembl | uniprot_id | Direct target binding or modulation |
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# How to Use
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You can easily load this dataset using the Hugging Face `datasets` library:
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```python
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from datasets import load_dataset
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# Example 1: Load the Protein nodes
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proteins = load_dataset("HUBioDataLab/CROssBARv2-KG", data_files="nodes/Protein.csv")
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# Example 2: Load Drug-Target Interactions (Edges)
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dti_edges = load_dataset("HUBioDataLab/CROssBARv2-KG", data_files="edges/DTI.csv")
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```
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edges/CTI.csv
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version https://git-lfs.github.com/spec/v1
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oid sha256:30d431391a963c009ae7775cdf092153c0840adf6dbc2a1f083795c38886c6f9
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size 96016168
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version https://git-lfs.github.com/spec/v1
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oid sha256:bd44f565d06abb0417842e720ba0f230b90ce627d8217a07aaa729ccb812a733
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size 10778924
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version https://git-lfs.github.com/spec/v1
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oid sha256:e622c99010ba1cfa8eb7b147ed749922e5df2c9f40aae3ddc8d6e23b542e02a3
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size 21229428
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edges/Disease_hiererchical_edges.csv
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edges/Disease_to_disease_comorbidity_edge.csv
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edges/Disease_to_drug_edge.csv
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edges/Disease_to_pathway.csv
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edges/Domain_to_go.csv
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edges/Drug_to_pathway.csv
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edges/Drug_to_side_effect.csv
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version https://git-lfs.github.com/spec/v1
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oid sha256:f6e55ef976aa407180795bba9a02fe6d00b591d68dc0bea451181af135b234af
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size 86242080
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edges/Ec_hierarchy.csv
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edges/Gene_encodes_protein.csv
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version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:ae4de16df9c0f674c8c8ef2e71fe21e01c028edd705c355da162a4a2b34ae68a
|
| 3 |
+
size 13455311
|
edges/Gene_to_disease_edge.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
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|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:928fbc9eef29cf78dbb6f34d6307ccde4fc149867d53161c39739d2d39211b58
|
| 3 |
+
size 82691929
|
edges/Go_to_go.csv
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
edges/Organism_to_disease_edge.csv
ADDED
|
@@ -0,0 +1,1064 @@
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|
| 1 |
+
organism_id,disease_id,label
|
| 2 |
+
ncbitaxon:1674146,mondo:0019632,organism_causes_disease
|
| 3 |
+
ncbitaxon:138948,mondo:0005791,organism_causes_disease
|
| 4 |
+
ncbitaxon:499556,mondo:0017878,organism_causes_disease
|
| 5 |
+
ncbitaxon:1485,mondo:0005767,organism_causes_disease
|
| 6 |
+
ncbitaxon:5722,mondo:0005135,organism_causes_disease
|
| 7 |
+
ncbitaxon:100588,mondo:0001260,organism_causes_disease
|
| 8 |
+
ncbitaxon:451,mondo:0005824,organism_causes_disease
|
| 9 |
+
ncbitaxon:10310,mondo:0004712,organism_causes_disease
|
| 10 |
+
ncbitaxon:36826,mondo:0015803,organism_causes_disease
|
| 11 |
+
ncbitaxon:5550,mondo:0005983,organism_causes_disease
|
| 12 |
+
ncbitaxon:63405,mondo:0000243,organism_causes_disease
|
| 13 |
+
ncbitaxon:991910,mondo:0001549,organism_causes_disease
|
| 14 |
+
ncbitaxon:10310,mondo:0005770,organism_causes_disease
|
| 15 |
+
ncbitaxon:5855,mondo:0005670,organism_causes_disease
|
| 16 |
+
ncbitaxon:45258,mondo:0000230,organism_causes_disease
|
| 17 |
+
ncbitaxon:12083,mondo:0005684,organism_causes_disease
|
| 18 |
+
ncbitaxon:539,mondo:0004854,organism_causes_disease
|
| 19 |
+
ncbitaxon:37936,mondo:0000256,organism_causes_disease
|
| 20 |
+
ncbitaxon:480418,mondo:0001391,organism_causes_disease
|
| 21 |
+
ncbitaxon:5476,mondo:0006032,organism_causes_disease
|
| 22 |
+
ncbitaxon:90370,mondo:0005619,organism_causes_disease
|
| 23 |
+
ncbitaxon:88456,mondo:0005725,organism_causes_disease
|
| 24 |
+
ncbitaxon:5475,mondo:0004824,organism_causes_disease
|
| 25 |
+
ncbitaxon:6210,mondo:0017282,organism_causes_disease
|
| 26 |
+
ncbitaxon:120957,mondo:0017776,organism_causes_disease
|
| 27 |
+
ncbitaxon:1902345,mondo:0005895,organism_causes_disease
|
| 28 |
+
ncbitaxon:5476,mondo:0005886,organism_causes_disease
|
| 29 |
+
ncbitaxon:10376,mondo:0000286,organism_causes_disease
|
| 30 |
+
ncbitaxon:1561,mondo:0005498,organism_causes_disease
|
| 31 |
+
ncbitaxon:114727,mondo:0005460,organism_causes_disease
|
| 32 |
+
ncbitaxon:615,mondo:0004854,organism_causes_disease
|
| 33 |
+
ncbitaxon:1769,mondo:0005127,organism_causes_disease
|
| 34 |
+
ncbitaxon:302011,mondo:0024473,organism_causes_disease
|
| 35 |
+
ncbitaxon:91928,mondo:0001867,organism_causes_disease
|
| 36 |
+
ncbitaxon:10298,mondo:0004712,organism_causes_disease
|
| 37 |
+
ncbitaxon:160,mondo:0006662,organism_causes_disease
|
| 38 |
+
ncbitaxon:10372,mondo:0000337,organism_causes_disease
|
| 39 |
+
ncbitaxon:12814,mondo:0002465,organism_causes_disease
|
| 40 |
+
ncbitaxon:803,mondo:0005991,organism_causes_disease
|
| 41 |
+
ncbitaxon:446,mondo:0005824,organism_causes_disease
|
| 42 |
+
ncbitaxon:10335,mondo:0005609,organism_causes_disease
|
| 43 |
+
ncbitaxon:323732,mondo:0005661,organism_causes_disease
|
| 44 |
+
ncbitaxon:6211,mondo:0018408,organism_causes_disease
|
| 45 |
+
ncbitaxon:785,mondo:0000330,organism_causes_disease
|
| 46 |
+
ncbitaxon:11620,mondo:0005820,organism_causes_disease
|
| 47 |
+
ncbitaxon:5476,mondo:0001648,organism_causes_disease
|
| 48 |
+
ncbitaxon:279403,mondo:0005776,organism_causes_disease
|
| 49 |
+
ncbitaxon:186537,mondo:0020500,organism_causes_disease
|
| 50 |
+
ncbitaxon:10535,mondo:0005249,organism_causes_disease
|
| 51 |
+
ncbitaxon:485,mondo:0001027,organism_causes_disease
|
| 52 |
+
ncbitaxon:746128,mondo:0005657,organism_causes_disease
|
| 53 |
+
ncbitaxon:485,mondo:0004854,organism_causes_disease
|
| 54 |
+
ncbitaxon:5579,mondo:0001867,organism_causes_disease
|
| 55 |
+
ncbitaxon:10535,mondo:0005911,organism_causes_disease
|
| 56 |
+
ncbitaxon:11027,mondo:0000342,organism_causes_disease
|
| 57 |
+
ncbitaxon:1824,mondo:0017776,organism_causes_disease
|
| 58 |
+
ncbitaxon:6185,mondo:0008412,organism_causes_disease
|
| 59 |
+
ncbitaxon:161,mondo:0002896,organism_causes_disease
|
| 60 |
+
ncbitaxon:46839,mondo:0006662,organism_causes_disease
|
| 61 |
+
ncbitaxon:6183,mondo:0015254,organism_causes_disease
|
| 62 |
+
ncbitaxon:376725,mondo:0001549,organism_causes_disease
|
| 63 |
+
ncbitaxon:263,mondo:0001413,organism_causes_disease
|
| 64 |
+
ncbitaxon:34620,mondo:0005981,organism_causes_disease
|
| 65 |
+
ncbitaxon:37769,mondo:0005724,organism_causes_disease
|
| 66 |
+
ncbitaxon:40349,mondo:0005995,organism_causes_disease
|
| 67 |
+
ncbitaxon:5476,mondo:0000879,organism_causes_disease
|
| 68 |
+
ncbitaxon:5039,mondo:0001616,organism_causes_disease
|
| 69 |
+
ncbitaxon:39831,mondo:0005945,organism_causes_disease
|
| 70 |
+
ncbitaxon:434055,mondo:0005895,organism_causes_disease
|
| 71 |
+
ncbitaxon:632,mondo:0001024,organism_causes_disease
|
| 72 |
+
ncbitaxon:29917,mondo:0001867,organism_causes_disease
|
| 73 |
+
ncbitaxon:12637,mondo:0000248,organism_causes_disease
|
| 74 |
+
ncbitaxon:6183,mondo:0005874,organism_causes_disease
|
| 75 |
+
ncbitaxon:40355,mondo:0015908,organism_causes_disease
|
| 76 |
+
ncbitaxon:141349,mondo:0003067,organism_causes_disease
|
| 77 |
+
ncbitaxon:115425,mondo:0005954,organism_causes_disease
|
| 78 |
+
ncbitaxon:1980486,mondo:0005784,organism_causes_disease
|
| 79 |
+
ncbitaxon:5691,mondo:0005459,organism_causes_disease
|
| 80 |
+
ncbitaxon:5476,mondo:0001984,organism_causes_disease
|
| 81 |
+
ncbitaxon:100816,mondo:0005757,organism_causes_disease
|
| 82 |
+
ncbitaxon:11053,mondo:0000259,organism_causes_disease
|
| 83 |
+
ncbitaxon:723287,mondo:0005846,organism_causes_disease
|
| 84 |
+
ncbitaxon:584,mondo:0004854,organism_causes_disease
|
| 85 |
+
ncbitaxon:1313,mondo:0005249,organism_causes_disease
|
| 86 |
+
ncbitaxon:227859,mondo:0005091,organism_causes_disease
|
| 87 |
+
ncbitaxon:141,mondo:0001621,organism_causes_disease
|
| 88 |
+
ncbitaxon:864142,mondo:0005136,organism_causes_disease
|
| 89 |
+
ncbitaxon:10310,mondo:0006662,organism_causes_disease
|
| 90 |
+
ncbitaxon:10335,mondo:0005769,organism_causes_disease
|
| 91 |
+
ncbitaxon:60516,mondo:0015260,organism_causes_disease
|
| 92 |
+
ncbitaxon:10358,mondo:0002251,organism_causes_disease
|
| 93 |
+
ncbitaxon:36827,mondo:0015803,organism_causes_disease
|
| 94 |
+
ncbitaxon:5584,mondo:0000256,organism_causes_disease
|
| 95 |
+
ncbitaxon:36826,mondo:0016453,organism_causes_disease
|
| 96 |
+
ncbitaxon:7389,mondo:0019147,organism_causes_disease
|
| 97 |
+
ncbitaxon:86057,mondo:0000256,organism_causes_disease
|
| 98 |
+
ncbitaxon:349746,mondo:0019095,organism_causes_disease
|
| 99 |
+
ncbitaxon:1392,mondo:0005249,organism_causes_disease
|
| 100 |
+
ncbitaxon:1980476,mondo:0017879,organism_causes_disease
|
| 101 |
+
ncbitaxon:1980456,mondo:0005784,organism_causes_disease
|
| 102 |
+
ncbitaxon:149546,mondo:0001262,organism_causes_disease
|
| 103 |
+
ncbitaxon:1769,mondo:0005125,organism_causes_disease
|
| 104 |
+
ncbitaxon:60533,mondo:0000295,organism_causes_disease
|
| 105 |
+
ncbitaxon:5855,mondo:0005625,organism_causes_disease
|
| 106 |
+
ncbitaxon:1492,mondo:0005498,organism_causes_disease
|
| 107 |
+
ncbitaxon:121224,mondo:0003472,organism_causes_disease
|
| 108 |
+
ncbitaxon:1055537,mondo:0001549,organism_causes_disease
|
| 109 |
+
ncbitaxon:12090,mondo:0005634,organism_causes_disease
|
| 110 |
+
ncbitaxon:63417,mondo:0001405,organism_causes_disease
|
| 111 |
+
ncbitaxon:6206,mondo:0000367,organism_causes_disease
|
| 112 |
+
ncbitaxon:5480,mondo:0002026,organism_causes_disease
|
| 113 |
+
ncbitaxon:6269,mondo:0015200,organism_causes_disease
|
| 114 |
+
ncbitaxon:1350,mondo:0005249,organism_causes_disease
|
| 115 |
+
ncbitaxon:6279,mondo:0005761,organism_causes_disease
|
| 116 |
+
ncbitaxon:51028,mondo:0004664,organism_causes_disease
|
| 117 |
+
ncbitaxon:38568,mondo:0011989,organism_causes_disease
|
| 118 |
+
ncbitaxon:864141,mondo:0005670,organism_causes_disease
|
| 119 |
+
ncbitaxon:747,mondo:0005901,organism_causes_disease
|
| 120 |
+
ncbitaxon:4890,mondo:0000244,organism_causes_disease
|
| 121 |
+
ncbitaxon:33758,mondo:0005249,organism_causes_disease
|
| 122 |
+
ncbitaxon:33972,mondo:0001039,organism_causes_disease
|
| 123 |
+
ncbitaxon:12455,mondo:0005676,organism_causes_disease
|
| 124 |
+
ncbitaxon:848,mondo:0005249,organism_causes_disease
|
| 125 |
+
ncbitaxon:5806,mondo:0015474,organism_causes_disease
|
| 126 |
+
ncbitaxon:5796,mondo:0005707,organism_causes_disease
|
| 127 |
+
ncbitaxon:34392,mondo:0001699,organism_causes_disease
|
| 128 |
+
ncbitaxon:6204,mondo:0006662,organism_causes_disease
|
| 129 |
+
ncbitaxon:69364,mondo:0019147,organism_causes_disease
|
| 130 |
+
ncbitaxon:42399,mondo:0005846,organism_causes_disease
|
| 131 |
+
ncbitaxon:463,mondo:0005824,organism_causes_disease
|
| 132 |
+
ncbitaxon:42231,mondo:0005838,organism_causes_disease
|
| 133 |
+
ncbitaxon:42862,mondo:0000330,organism_causes_disease
|
| 134 |
+
ncbitaxon:620,mondo:0019345,organism_causes_disease
|
| 135 |
+
ncbitaxon:115545,mondo:0005901,organism_causes_disease
|
| 136 |
+
ncbitaxon:121759,mondo:0005894,organism_causes_disease
|
| 137 |
+
ncbitaxon:813,mondo:0005701,organism_causes_disease
|
| 138 |
+
ncbitaxon:11083,mondo:0000276,organism_causes_disease
|
| 139 |
+
ncbitaxon:11020,mondo:0000343,organism_causes_disease
|
| 140 |
+
ncbitaxon:5550,mondo:0001461,organism_causes_disease
|
| 141 |
+
ncbitaxon:108098,mondo:0005911,organism_causes_disease
|
| 142 |
+
ncbitaxon:12059,mondo:0005249,organism_causes_disease
|
| 143 |
+
ncbitaxon:161,mondo:0002897,organism_causes_disease
|
| 144 |
+
ncbitaxon:5039,mondo:0005672,organism_causes_disease
|
| 145 |
+
ncbitaxon:235,mondo:0005683,organism_causes_disease
|
| 146 |
+
ncbitaxon:5833,mondo:0005625,organism_causes_disease
|
| 147 |
+
ncbitaxon:6209,mondo:0005738,organism_causes_disease
|
| 148 |
+
ncbitaxon:52773,mondo:0005631,organism_causes_disease
|
| 149 |
+
ncbitaxon:37727,mondo:0000304,organism_causes_disease
|
| 150 |
+
ncbitaxon:6334,mondo:0019444,organism_causes_disease
|
| 151 |
+
ncbitaxon:99802,mondo:0005963,organism_causes_disease
|
| 152 |
+
ncbitaxon:1457282,mondo:0001532,organism_causes_disease
|
| 153 |
+
ncbitaxon:29459,mondo:0005683,organism_causes_disease
|
| 154 |
+
ncbitaxon:2637,mondo:0000259,organism_causes_disease
|
| 155 |
+
ncbitaxon:72358,mondo:0005846,organism_causes_disease
|
| 156 |
+
ncbitaxon:1392,mondo:0004215,organism_causes_disease
|
| 157 |
+
ncbitaxon:1773,mondo:0005768,organism_causes_disease
|
| 158 |
+
ncbitaxon:186541,mondo:0005737,organism_causes_disease
|
| 159 |
+
ncbitaxon:5875,mondo:0005978,organism_causes_disease
|
| 160 |
+
ncbitaxon:58839,mondo:0005743,organism_causes_disease
|
| 161 |
+
ncbitaxon:36831,mondo:0015804,organism_causes_disease
|
| 162 |
+
ncbitaxon:10376,mondo:0006662,organism_causes_disease
|
| 163 |
+
ncbitaxon:782,mondo:0019362,organism_causes_disease
|
| 164 |
+
ncbitaxon:485,mondo:0000222,organism_causes_disease
|
| 165 |
+
ncbitaxon:34503,mondo:0005895,organism_causes_disease
|
| 166 |
+
ncbitaxon:11086,mondo:0005829,organism_causes_disease
|
| 167 |
+
ncbitaxon:51028,mondo:0005746,organism_causes_disease
|
| 168 |
+
ncbitaxon:6252,mondo:0005654,organism_causes_disease
|
| 169 |
+
ncbitaxon:5507,mondo:0016426,organism_causes_disease
|
| 170 |
+
ncbitaxon:1980471,mondo:0005784,organism_causes_disease
|
| 171 |
+
ncbitaxon:11158,mondo:0005249,organism_causes_disease
|
| 172 |
+
ncbitaxon:66225,mondo:0001867,organism_causes_disease
|
| 173 |
+
ncbitaxon:142,mondo:0001621,organism_causes_disease
|
| 174 |
+
ncbitaxon:141349,mondo:0005922,organism_causes_disease
|
| 175 |
+
ncbitaxon:138950,mondo:0017373,organism_causes_disease
|
| 176 |
+
ncbitaxon:34606,mondo:0005981,organism_causes_disease
|
| 177 |
+
ncbitaxon:6945,mondo:0005981,organism_causes_disease
|
| 178 |
+
ncbitaxon:1055538,mondo:0001549,organism_causes_disease
|
| 179 |
+
ncbitaxon:139,mondo:0006662,organism_causes_disease
|
| 180 |
+
ncbitaxon:29930,mondo:0005981,organism_causes_disease
|
| 181 |
+
ncbitaxon:58291,mondo:0002041,organism_causes_disease
|
| 182 |
+
ncbitaxon:82517,mondo:0001827,organism_causes_disease
|
| 183 |
+
ncbitaxon:5551,mondo:0004678,organism_causes_disease
|
| 184 |
+
ncbitaxon:37769,mondo:0000256,organism_causes_disease
|
| 185 |
+
ncbitaxon:12730,mondo:0002258,organism_causes_disease
|
| 186 |
+
ncbitaxon:36911,mondo:0002026,organism_causes_disease
|
| 187 |
+
ncbitaxon:6035,mondo:0005846,organism_causes_disease
|
| 188 |
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|
| 895 |
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|
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ncbitaxon:783,mondo:0001195,organism_causes_disease
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|
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|
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|
| 907 |
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ncbitaxon:5550,mondo:0005984,organism_causes_disease
|
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|
| 910 |
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ncbitaxon:115427,mondo:0019147,organism_causes_disease
|
| 911 |
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ncbitaxon:11176,mondo:0005875,organism_causes_disease
|
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|
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ncbitaxon:46684,mondo:0005655,organism_causes_disease
|
| 914 |
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|
| 915 |
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|
| 916 |
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ncbitaxon:777,mondo:0005249,organism_causes_disease
|
| 917 |
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ncbitaxon:35233,mondo:0005846,organism_causes_disease
|
| 918 |
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ncbitaxon:562,mondo:0005249,organism_causes_disease
|
| 919 |
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ncbitaxon:5865,mondo:0005661,organism_causes_disease
|
| 920 |
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ncbitaxon:929439,mondo:0011989,organism_causes_disease
|
| 921 |
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ncbitaxon:214092,mondo:0019095,organism_causes_disease
|
| 922 |
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ncbitaxon:745,mondo:0005901,organism_causes_disease
|
| 923 |
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ncbitaxon:10566,mondo:0005096,organism_causes_disease
|
| 924 |
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ncbitaxon:12080,mondo:0005684,organism_causes_disease
|
| 925 |
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ncbitaxon:51031,mondo:0005870,organism_causes_disease
|
| 926 |
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ncbitaxon:210,mondo:0005688,organism_causes_disease
|
| 927 |
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ncbitaxon:65647,mondo:0005981,organism_causes_disease
|
| 928 |
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ncbitaxon:121224,mondo:0003482,organism_causes_disease
|
| 929 |
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ncbitaxon:1767,mondo:0005866,organism_causes_disease
|
| 930 |
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ncbitaxon:1408500,mondo:0002875,organism_causes_disease
|
| 931 |
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ncbitaxon:1314,mondo:0001881,organism_causes_disease
|
| 932 |
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ncbitaxon:333763,mondo:0009237,organism_causes_disease
|
| 933 |
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ncbitaxon:147828,mondo:0005884,organism_causes_disease
|
| 934 |
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ncbitaxon:523103,mondo:0004678,organism_causes_disease
|
| 935 |
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ncbitaxon:86049,mondo:0015908,organism_causes_disease
|
| 936 |
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ncbitaxon:5661,mondo:0005445,organism_causes_disease
|
| 937 |
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|
| 938 |
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ncbitaxon:6185,mondo:0006001,organism_causes_disease
|
| 939 |
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ncbitaxon:5552,mondo:0000306,organism_causes_disease
|
| 940 |
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ncbitaxon:42068,mondo:0019121,organism_causes_disease
|
| 941 |
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ncbitaxon:5598,mondo:0001867,organism_causes_disease
|
| 942 |
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ncbitaxon:5037,mondo:0001262,organism_causes_disease
|
| 943 |
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ncbitaxon:774,mondo:0000758,organism_causes_disease
|
| 944 |
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ncbitaxon:6182,mondo:0005874,organism_causes_disease
|
| 945 |
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ncbitaxon:485,mondo:0001039,organism_causes_disease
|
| 946 |
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ncbitaxon:141,mondo:0019633,organism_causes_disease
|
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ncbitaxon:63402,mondo:0000243,organism_causes_disease
|
| 948 |
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ncbitaxon:859,mondo:0001039,organism_causes_disease
|
| 949 |
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ncbitaxon:127916,mondo:0000307,organism_causes_disease
|
| 950 |
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ncbitaxon:5664,mondo:0011989,organism_causes_disease
|
| 951 |
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ncbitaxon:36831,mondo:0015805,organism_causes_disease
|
| 952 |
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|
| 953 |
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ncbitaxon:10298,mondo:0002258,organism_causes_disease
|
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|
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|
| 956 |
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ncbitaxon:1659,mondo:0005249,organism_causes_disease
|
| 957 |
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ncbitaxon:119210,mondo:0018695,organism_causes_disease
|
| 958 |
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ncbitaxon:11520,mondo:0006662,organism_causes_disease
|
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ncbitaxon:311453,mondo:0005846,organism_causes_disease
|
| 960 |
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ncbitaxon:34390,mondo:0001699,organism_causes_disease
|
| 961 |
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ncbitaxon:45150,mondo:0001867,organism_causes_disease
|
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ncbitaxon:160,mondo:0004944,organism_causes_disease
|
| 963 |
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ncbitaxon:1173061,mondo:0005772,organism_causes_disease
|
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ncbitaxon:197,mondo:0005688,organism_causes_disease
|
| 965 |
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ncbitaxon:1980456,mondo:0017879,organism_causes_disease
|
| 966 |
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|
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|
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|
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|
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|
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|
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|
| 973 |
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|
| 974 |
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|
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|
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|
| 977 |
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|
| 978 |
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ncbitaxon:10368,mondo:0000337,organism_causes_disease
|
| 979 |
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ncbitaxon:1773,mondo:0000271,organism_causes_disease
|
| 980 |
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ncbitaxon:2104,mondo:0006662,organism_causes_disease
|
| 981 |
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ncbitaxon:150476,mondo:0000299,organism_causes_disease
|
| 982 |
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|
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ncbitaxon:40834,mondo:0001621,organism_causes_disease
|
| 984 |
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ncbitaxon:6035,mondo:0005743,organism_causes_disease
|
| 985 |
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ncbitaxon:782,mondo:0005680,organism_causes_disease
|
| 986 |
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ncbitaxon:6182,mondo:0008412,organism_causes_disease
|
| 987 |
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ncbitaxon:35788,mondo:0000227,organism_causes_disease
|
| 988 |
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ncbitaxon:727,mondo:0001039,organism_causes_disease
|
| 989 |
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ncbitaxon:34504,mondo:0005895,organism_causes_disease
|
| 990 |
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|
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ncbitaxon:723,mondo:0005630,organism_causes_disease
|
| 992 |
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ncbitaxon:1765,mondo:0001537,organism_causes_disease
|
| 993 |
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ncbitaxon:174,mondo:0005825,organism_causes_disease
|
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ncbitaxon:5553,mondo:0001827,organism_causes_disease
|
| 995 |
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ncbitaxon:10617,mondo:0001209,organism_causes_disease
|
| 996 |
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ncbitaxon:1055535,mondo:0001549,organism_causes_disease
|
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ncbitaxon:807,mondo:0005664,organism_causes_disease
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| 998 |
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ncbitaxon:1038927,mondo:0001549,organism_causes_disease
|
| 999 |
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ncbitaxon:1280,mondo:0018181,organism_causes_disease
|
| 1000 |
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ncbitaxon:160,mondo:0000335,organism_causes_disease
|
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ncbitaxon:316517,mondo:0005911,organism_causes_disease
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ncbitaxon:73230,mondo:0000239,organism_causes_disease
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ncbitaxon:574145,mondo:0004389,organism_causes_disease
|
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ncbitaxon:6210,mondo:0000288,organism_causes_disease
|
| 1005 |
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ncbitaxon:35792,mondo:0000234,organism_causes_disease
|
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ncbitaxon:318479,mondo:0016472,organism_causes_disease
|
| 1007 |
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ncbitaxon:36330,mondo:0005136,organism_causes_disease
|
| 1008 |
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ncbitaxon:334202,mondo:0005647,organism_causes_disease
|
| 1009 |
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ncbitaxon:5475,mondo:0015279,organism_causes_disease
|
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ncbitaxon:520,mondo:0005077,organism_causes_disease
|
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ncbitaxon:63417,mondo:0000243,organism_causes_disease
|
| 1012 |
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ncbitaxon:27845,mondo:0004672,organism_causes_disease
|
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ncbitaxon:1773,mondo:0005831,organism_causes_disease
|
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ncbitaxon:11069,mondo:0005502,organism_causes_disease
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ncbitaxon:12086,mondo:0005684,organism_causes_disease
|
| 1016 |
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ncbitaxon:11084,mondo:0017572,organism_causes_disease
|
| 1017 |
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ncbitaxon:813,mondo:0005834,organism_causes_disease
|
| 1018 |
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ncbitaxon:1280,mondo:0005230,organism_causes_disease
|
| 1019 |
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ncbitaxon:6210,mondo:0005738,organism_causes_disease
|
| 1020 |
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ncbitaxon:362241,mondo:0000232,organism_causes_disease
|
| 1021 |
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ncbitaxon:5039,mondo:0000256,organism_causes_disease
|
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ncbitaxon:10617,mondo:0001795,organism_causes_disease
|
| 1023 |
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ncbitaxon:372152,mondo:0015260,organism_causes_disease
|
| 1024 |
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ncbitaxon:11118,mondo:0005249,organism_causes_disease
|
| 1025 |
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ncbitaxon:11060,mondo:0000259,organism_causes_disease
|
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ncbitaxon:5052,mondo:0005657,organism_causes_disease
|
| 1027 |
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ncbitaxon:69364,mondo:0005954,organism_causes_disease
|
| 1028 |
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ncbitaxon:5052,mondo:0005873,organism_causes_disease
|
| 1029 |
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ncbitaxon:226665,mondo:0000231,organism_causes_disease
|
| 1030 |
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ncbitaxon:6211,mondo:0005738,organism_causes_disease
|
| 1031 |
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ncbitaxon:40355,mondo:0000256,organism_causes_disease
|
| 1032 |
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ncbitaxon:333750,mondo:0005647,organism_causes_disease
|
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ncbitaxon:445,mondo:0005249,organism_causes_disease
|
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ncbitaxon:32603,mondo:0000337,organism_causes_disease
|
| 1035 |
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ncbitaxon:485,mondo:0001025,organism_causes_disease
|
| 1036 |
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ncbitaxon:59628,mondo:0005895,organism_causes_disease
|
| 1037 |
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ncbitaxon:48796,mondo:0005957,organism_causes_disease
|
| 1038 |
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ncbitaxon:11234,mondo:0005249,organism_causes_disease
|
| 1039 |
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ncbitaxon:39824,mondo:0005777,organism_causes_disease
|
| 1040 |
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ncbitaxon:194,mondo:0005688,organism_causes_disease
|
| 1041 |
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ncbitaxon:5868,mondo:0005661,organism_causes_disease
|
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ncbitaxon:73231,mondo:0000239,organism_causes_disease
|
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ncbitaxon:5811,mondo:0006662,organism_causes_disease
|
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ncbitaxon:34488,mondo:0000303,organism_causes_disease
|
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ncbitaxon:160,mondo:0005821,organism_causes_disease
|
| 1046 |
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ncbitaxon:34393,mondo:0005983,organism_causes_disease
|
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ncbitaxon:11077,mondo:0000273,organism_causes_disease
|
| 1048 |
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ncbitaxon:115427,mondo:0005805,organism_causes_disease
|
| 1049 |
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ncbitaxon:34480,mondo:0000302,organism_causes_disease
|
| 1050 |
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ncbitaxon:39412,mondo:0000256,organism_causes_disease
|
| 1051 |
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ncbitaxon:12083,mondo:0000340,organism_causes_disease
|
| 1052 |
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ncbitaxon:11072,mondo:0019209,organism_causes_disease
|
| 1053 |
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ncbitaxon:10566,mondo:0001795,organism_causes_disease
|
| 1054 |
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ncbitaxon:61466,mondo:0005776,organism_causes_disease
|
| 1055 |
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ncbitaxon:5550,mondo:0000254,organism_causes_disease
|
| 1056 |
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ncbitaxon:119218,mondo:0018695,organism_causes_disease
|
| 1057 |
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ncbitaxon:6293,mondo:0005761,organism_causes_disease
|
| 1058 |
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ncbitaxon:838,mondo:0001039,organism_causes_disease
|
| 1059 |
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ncbitaxon:157,mondo:0000979,organism_causes_disease
|
| 1060 |
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ncbitaxon:1314,mondo:0001039,organism_causes_disease
|
| 1061 |
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ncbitaxon:7209,mondo:0016566,organism_causes_disease
|
| 1062 |
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ncbitaxon:1980442,mondo:0005784,organism_causes_disease
|
| 1063 |
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ncbitaxon:34632,mondo:0005981,organism_causes_disease
|
| 1064 |
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ncbitaxon:7380,mondo:0019147,organism_causes_disease
|
edges/Orthology.csv
ADDED
|
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|
|
|
edges/PPI.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
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|
|
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| 1 |
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version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:e535a2fa3636a853933aed195ff81abf88fe6b42bdf07b5d6696e1abcf3ce516
|
| 3 |
+
size 180777372
|
edges/Pathway_orthology.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:03f854c21ecc7287cadae77b82bac2247bc961cbb0d710a188bccc3fc436b4d2
|
| 3 |
+
size 45464410
|
edges/Pathway_to_pathway.csv
ADDED
|
@@ -0,0 +1,653 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
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|
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|
|
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|
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|
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|
|
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|
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|
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|
|
|
|
|
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|
|
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|
|
|
|
|
|
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|
|
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|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
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|
|
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|
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|
|
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|
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|
| 1 |
+
pathway_id1,pathway_id2,label
|
| 2 |
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reactome:R-HSA-2978092,kegg.pathway:hsa01210,pathway_is_part_of_pathway
|
| 3 |
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reactome:R-HSA-71406,kegg.pathway:hsa01210,pathway_is_part_of_pathway
|
| 4 |
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kegg.pathway:hsa02010,reactome:R-HSA-1369007,pathway_is_equivalent_to_pathway
|
| 5 |
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reactome:R-HSA-5683177,kegg.pathway:hsa02010,pathway_is_part_of_pathway
|
| 6 |
+
reactome:R-HSA-5679001,kegg.pathway:hsa02010,pathway_is_part_of_pathway
|
| 7 |
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reactome:R-HSA-5679096,kegg.pathway:hsa02010,pathway_is_part_of_pathway
|
| 8 |
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reactome:R-HSA-5683329,kegg.pathway:hsa02010,pathway_is_part_of_pathway
|
| 9 |
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reactome:R-HSA-5678520,kegg.pathway:hsa02010,pathway_is_part_of_pathway
|
| 10 |
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reactome:R-HSA-5690338,kegg.pathway:hsa02010,pathway_is_part_of_pathway
|
| 11 |
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reactome:R-HSA-5678420,kegg.pathway:hsa02010,pathway_is_part_of_pathway
|
| 12 |
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reactome:R-HSA-5679090,kegg.pathway:hsa02010,pathway_is_part_of_pathway
|
| 13 |
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reactome:R-HSA-5678771,kegg.pathway:hsa02010,pathway_is_part_of_pathway
|
| 14 |
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reactome:R-HSA-5684045,kegg.pathway:hsa02010,pathway_is_part_of_pathway
|
| 15 |
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reactome:R-HSA-5682294,kegg.pathway:hsa02010,pathway_is_part_of_pathway
|
| 16 |
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reactome:R-HSA-5683371,kegg.pathway:hsa02010,pathway_is_part_of_pathway
|
| 17 |
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reactome:R-HSA-5619084,kegg.pathway:hsa02010,pathway_is_part_of_pathway
|
| 18 |
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reactome:R-HSA-5682113,kegg.pathway:hsa02010,pathway_is_part_of_pathway
|
| 19 |
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reactome:R-HSA-5688399,kegg.pathway:hsa02010,pathway_is_part_of_pathway
|
| 20 |
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reactome:R-HSA-1369062,kegg.pathway:hsa02010,pathway_is_part_of_pathway
|
| 21 |
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reactome:R-HSA-5683678,kegg.pathway:hsa02010,pathway_is_part_of_pathway
|
| 22 |
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reactome:R-HSA-382556,kegg.pathway:hsa02010,pathway_is_part_of_pathway
|
| 23 |
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reactome:R-HSA-163680,kegg.pathway:hsa04152,pathway_is_part_of_pathway
|
| 24 |
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kegg.pathway:hsa04520,reactome:R-HSA-418990,pathway_is_equivalent_to_pathway
|
| 25 |
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reactome:R-HSA-2586552,kegg.pathway:hsa04920,pathway_is_part_of_pathway
|
| 26 |
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kegg.pathway:hsa04920,reactome:R-HSA-1430728,pathway_is_part_of_pathway
|
| 27 |
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kegg.pathway:hsa00250,reactome:R-HSA-71291,pathway_is_part_of_pathway
|
| 28 |
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kegg.pathway:hsa00250,reactome:R-HSA-1430728,pathway_is_part_of_pathway
|
| 29 |
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kegg.pathway:hsa04925,reactome:R-HSA-1430728,pathway_is_part_of_pathway
|
| 30 |
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kegg.pathway:hsa05330,reactome:R-HSA-1280218,pathway_is_part_of_pathway
|
| 31 |
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kegg.pathway:hsa05330,reactome:R-HSA-168256,pathway_is_part_of_pathway
|
| 32 |
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reactome:R-HSA-8862803,kegg.pathway:hsa05010,pathway_is_part_of_pathway
|
| 33 |
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kegg.pathway:hsa00520,reactome:R-HSA-1430728,pathway_is_part_of_pathway
|
| 34 |
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kegg.pathway:hsa00970,reactome:R-HSA-1430728,pathway_is_part_of_pathway
|
| 35 |
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reactome:R-HSA-379724,kegg.pathway:hsa00970,pathway_is_part_of_pathway
|
| 36 |
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reactome:R-HSA-379726,kegg.pathway:hsa00970,pathway_is_part_of_pathway
|
| 37 |
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reactome:R-HSA-379716,kegg.pathway:hsa00970,pathway_is_part_of_pathway
|
| 38 |
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kegg.pathway:hsa04612,reactome:R-HSA-1236975,pathway_is_equivalent_to_pathway
|
| 39 |
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reactome:R-HSA-2132295,kegg.pathway:hsa04612,pathway_is_part_of_pathway
|
| 40 |
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reactome:R-HSA-983170,kegg.pathway:hsa04612,pathway_is_part_of_pathway
|
| 41 |
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reactome:R-HSA-983169,kegg.pathway:hsa04612,pathway_is_part_of_pathway
|
| 42 |
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kegg.pathway:hsa04210,reactome:R-HSA-109581,pathway_is_equivalent_to_pathway
|
| 43 |
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reactome:R-HSA-109581,kegg.pathway:hsa04215,pathway_is_part_of_pathway
|
| 44 |
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kegg.pathway:hsa00590,reactome:R-HSA-2142753,pathway_is_equivalent_to_pathway
|
| 45 |
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reactome:R-HSA-70688,kegg.pathway:hsa00330,pathway_is_part_of_pathway
|
| 46 |
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kegg.pathway:hsa00330,reactome:R-HSA-1430728,pathway_is_part_of_pathway
|
| 47 |
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kegg.pathway:hsa00330,reactome:R-HSA-71291,pathway_is_part_of_pathway
|
| 48 |
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kegg.pathway:hsa00220,reactome:R-HSA-1430728,pathway_is_part_of_pathway
|
| 49 |
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kegg.pathway:hsa00220,reactome:R-HSA-71291,pathway_is_part_of_pathway
|
| 50 |
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kegg.pathway:hsa00220,reactome:R-HSA-70635,pathway_is_part_of_pathway
|
| 51 |
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kegg.pathway:hsa00053,reactome:R-HSA-1430728,pathway_is_part_of_pathway
|
| 52 |
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kegg.pathway:hsa04136,reactome:R-HSA-1632852,pathway_is_equivalent_to_pathway
|
| 53 |
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kegg.pathway:hsa04136,reactome:R-HSA-168256,pathway_is_part_of_pathway
|
| 54 |
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reactome:R-HSA-8953897,kegg.pathway:hsa04136,pathway_is_part_of_pathway
|
| 55 |
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kegg.pathway:hsa04360,reactome:R-HSA-422475,pathway_is_equivalent_to_pathway
|
| 56 |
+
kegg.pathway:hsa04662,reactome:R-HSA-983705,pathway_is_equivalent_to_pathway
|
| 57 |
+
kegg.pathway:hsa04662,reactome:R-HSA-1280218,pathway_is_part_of_pathway
|
| 58 |
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kegg.pathway:hsa04662,reactome:R-HSA-168256,pathway_is_part_of_pathway
|
| 59 |
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reactome:R-HSA-6807505,kegg.pathway:hsa03022,pathway_is_part_of_pathway
|
| 60 |
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reactome:R-HSA-674695,kegg.pathway:hsa03022,pathway_is_part_of_pathway
|
| 61 |
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reactome:R-HSA-73776,kegg.pathway:hsa03022,pathway_is_part_of_pathway
|
| 62 |
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reactome:R-HSA-167160,kegg.pathway:hsa03022,pathway_is_part_of_pathway
|
| 63 |
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kegg.pathway:hsa03022,reactome:R-HSA-73857,pathway_is_part_of_pathway
|
| 64 |
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reactome:R-HSA-77075,kegg.pathway:hsa03022,pathway_is_part_of_pathway
|
| 65 |
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kegg.pathway:hsa03022,reactome:R-HSA-212436,pathway_is_part_of_pathway
|
| 66 |
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reactome:R-HSA-75953,kegg.pathway:hsa03022,pathway_is_part_of_pathway
|
| 67 |
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reactome:R-HSA-167162,kegg.pathway:hsa03022,pathway_is_part_of_pathway
|
| 68 |
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kegg.pathway:hsa03022,reactome:R-HSA-8953854,pathway_is_part_of_pathway
|
| 69 |
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reactome:R-HSA-73863,kegg.pathway:hsa03022,pathway_is_part_of_pathway
|
| 70 |
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reactome:R-HSA-73772,kegg.pathway:hsa03022,pathway_is_part_of_pathway
|
| 71 |
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reactome:R-HSA-73857,kegg.pathway:hsa03022,pathway_is_part_of_pathway
|
| 72 |
+
reactome:R-HSA-73779,kegg.pathway:hsa03022,pathway_is_part_of_pathway
|
| 73 |
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kegg.pathway:hsa03022,reactome:R-HSA-74160,pathway_is_part_of_pathway
|
| 74 |
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reactome:R-HSA-76042,kegg.pathway:hsa03022,pathway_is_part_of_pathway
|
| 75 |
+
kegg.pathway:hsa03410,reactome:R-HSA-73884,pathway_is_equivalent_to_pathway
|
| 76 |
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kegg.pathway:hsa04976,reactome:R-HSA-8935690,pathway_is_part_of_pathway
|
| 77 |
+
reactome:R-HSA-70614,kegg.pathway:hsa01230,pathway_is_part_of_pathway
|
| 78 |
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reactome:R-HSA-1614603,kegg.pathway:hsa01230,pathway_is_part_of_pathway
|
| 79 |
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kegg.pathway:hsa01230,reactome:R-HSA-1430728,pathway_is_part_of_pathway
|
| 80 |
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reactome:R-HSA-70635,kegg.pathway:hsa01230,pathway_is_part_of_pathway
|
| 81 |
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reactome:R-HSA-71182,kegg.pathway:hsa01230,pathway_is_part_of_pathway
|
| 82 |
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kegg.pathway:hsa01230,reactome:R-HSA-71291,pathway_is_part_of_pathway
|
| 83 |
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reactome:R-HSA-2046105,kegg.pathway:hsa01040,pathway_is_part_of_pathway
|
| 84 |
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reactome:R-HSA-75105,kegg.pathway:hsa01040,pathway_is_part_of_pathway
|
| 85 |
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reactome:R-HSA-75876,kegg.pathway:hsa01040,pathway_is_part_of_pathway
|
| 86 |
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kegg.pathway:hsa01040,reactome:R-HSA-8978868,pathway_is_part_of_pathway
|
| 87 |
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kegg.pathway:hsa04270,reactome:R-HSA-445355,pathway_is_part_of_pathway
|
| 613 |
+
kegg.pathway:hsa04270,reactome:R-HSA-397014,pathway_is_part_of_pathway
|
| 614 |
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kegg.pathway:hsa04962,reactome:R-HSA-432040,pathway_is_equivalent_to_pathway
|
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kegg.pathway:hsa00750,reactome:R-HSA-1430728,pathway_is_part_of_pathway
|
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kegg.pathway:hsa00750,reactome:R-HSA-196849,pathway_is_part_of_pathway
|
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kegg.pathway:hsa00750,reactome:R-HSA-196854,pathway_is_part_of_pathway
|
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reactome:R-HSA-964975,kegg.pathway:hsa00750,pathway_is_part_of_pathway
|
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kegg.pathway:hsa04977,reactome:R-HSA-8963676,pathway_is_part_of_pathway
|
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kegg.pathway:hsa04977,reactome:R-HSA-8963743,pathway_is_part_of_pathway
|
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kegg.pathway:hsa04977,reactome:R-HSA-196854,pathway_is_part_of_pathway
|
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kegg.pathway:hsa04310,reactome:R-HSA-195721,pathway_is_equivalent_to_pathway
|
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reactome:R-HSA-8951430,kegg.pathway:hsa04310,pathway_is_part_of_pathway
|
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reactome:R-HSA-201688,kegg.pathway:hsa04310,pathway_is_part_of_pathway
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reactome:R-HSA-5340573,kegg.pathway:hsa04310,pathway_is_part_of_pathway
|
| 626 |
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kegg.pathway:hsa00592,reactome:R-HSA-2046106,pathway_is_equivalent_to_pathway
|
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kegg.pathway:hsa00592,reactome:R-HSA-556833,pathway_is_part_of_pathway
|
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kegg.pathway:hsa00592,reactome:R-HSA-1430728,pathway_is_part_of_pathway
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kegg.pathway:hsa00410,reactome:R-HSA-71291,pathway_is_part_of_pathway
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kegg.pathway:hsa00410,reactome:R-HSA-1430728,pathway_is_part_of_pathway
|
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reactome:R-HSA-170660,kegg.pathway:hsa04024,pathway_is_part_of_pathway
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reactome:R-HSA-418457,kegg.pathway:hsa04022,pathway_is_part_of_pathway
|
| 633 |
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reactome:R-HSA-168315,kegg.pathway:hsa03015,pathway_is_part_of_pathway
|
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reactome:R-HSA-72203,kegg.pathway:hsa03015,pathway_is_part_of_pathway
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reactome:R-HSA-72172,kegg.pathway:hsa03015,pathway_is_part_of_pathway
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reactome:R-HSA-75067,kegg.pathway:hsa03015,pathway_is_part_of_pathway
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reactome:R-HSA-72187,kegg.pathway:hsa03015,pathway_is_part_of_pathway
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reactome:R-HSA-72163,kegg.pathway:hsa03015,pathway_is_part_of_pathway
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kegg.pathway:hsa04150,reactome:R-HSA-165159,pathway_is_equivalent_to_pathway
|
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reactome:R-HSA-5633008,kegg.pathway:hsa04115,pathway_is_part_of_pathway
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reactome:R-HSA-6804754,kegg.pathway:hsa04115,pathway_is_part_of_pathway
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reactome:R-HSA-6803211,kegg.pathway:hsa04115,pathway_is_part_of_pathway
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reactome:R-HSA-6803205,kegg.pathway:hsa04115,pathway_is_part_of_pathway
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reactome:R-HSA-6803207,kegg.pathway:hsa04115,pathway_is_part_of_pathway
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reactome:R-HSA-6804116,kegg.pathway:hsa04115,pathway_is_part_of_pathway
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reactome:R-HSA-6804757,kegg.pathway:hsa04115,pathway_is_part_of_pathway
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kegg.pathway:hsa04210,kegg.pathway:hsa04215,pathway_is_equivalent_to_pathway
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edges/Protein_belongs_to_organism.csv
ADDED
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edges/Protein_to_go.csv
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edges/Protein_to_pathway.csv
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edges/Protein_to_phenotype.csv
ADDED
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edges/Reactome_hierarchical_edges.csv
ADDED
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edges/Side_effect_hierarchy.csv
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edges/Tf_gene_edges.csv
ADDED
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nodes/Biological_process.csv
ADDED
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nodes/Disease.csv
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nodes/Domain.csv
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@@ -0,0 +1,3 @@
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nodes/Ec.csv
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ADDED
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