import numpy as np, pandas as pd from pathlib import Path from sklearn.preprocessing import StandardScaler from sklearn.linear_model import LinearRegression DATA = Path("data/processed"); RES = Path("results"); RES.mkdir(exist_ok=True, parents=True) C = pd.read_csv(DATA/"causal_table.csv") anchors = ["PDR5_expr","SNQ2_expr","YOR1_expr","ATM1_expr"] regs = ["YAP1_reg","PDR1_reg"] rows=[] for t in anchors: df = C[[t,"outcome"]+regs].dropna().copy() for r in regs: Z = df[[t, r]].astype(float).values Z = Z - Z.mean(0, keepdims=True) T = Z[:,0:1]; R = Z[:,1:2] X = np.hstack([T, R, T*R]) y = df["outcome"].astype(float).values nuis = ["ethanol_pct","ROS","NaCl_mM","H2O2_uM"] W = df.join(C[nuis], how="left")[nuis].astype(float).values W = W - W.mean(0, keepdims=True) Xfull = np.hstack([X, W]) mdl = LinearRegression().fit(Xfull, y) beta_T, beta_R, beta_TR = mdl.coef_[0], mdl.coef_[1], mdl.coef_[2] rows.append([t.replace("_expr",""), r, beta_T, beta_TR]) INT = pd.DataFrame(rows, columns=["transporter","regulator","main_T","interaction_TxReg"]) INT.to_csv(RES/"validation_interactions.csv", index=False) print(" Saved:", RES/"validation_interactions.csv") display(INT.sort_values(["transporter","regulator"]))