HoangHa commited on
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ccf5b09
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1 Parent(s): b330b99

Update pubmed25_debug.py

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  1. pubmed25_debug.py +21 -3
pubmed25_debug.py CHANGED
@@ -20,7 +20,7 @@ import gzip
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  import xml.etree.ElementTree as ET # Using standard ElementTree
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  import datasets
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-
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  logger = datasets.logging.get_logger(__name__)
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@@ -40,9 +40,27 @@ _HOMEPAGE = "https://www.nlm.nih.gov/databases/download/pubmed_medline.html"
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  _LICENSE = "" # Assuming standard NLM terms apply, check source for specifics
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- # Example URLs - Replace with desired baseline/update files
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- _URLs = [f"https://ftp.ncbi.nlm.nih.gov/pubmed/baseline/pubmed25n{i:04d}.xml.gz" for i in range(1273, 1274)]
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  # Copyright Ferry Boender, released under the MIT license.
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  # Modified by @Narsil to handle more oddities
 
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  import xml.etree.ElementTree as ET # Using standard ElementTree
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  import datasets
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+ import random
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  logger = datasets.logging.get_logger(__name__)
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  _LICENSE = "" # Assuming standard NLM terms apply, check source for specifics
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+ # Parameters
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+ total_files = 1274
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+ num_bins = 50
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+ total_urls = 20
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+
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+ # Compute bin size
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+ bin_size = total_files // num_bins
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+
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+ # Sample one random file from each bin
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+ selected_indices = []
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+ for b in range(num_bins):
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+ start = b * bin_size + 1
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+ end = min((b + 1) * bin_size + 1, total_files + 1)
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+ if start < end:
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+ selected_indices.append(random.randint(start, end - 1))
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+
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+ # Ensure we only keep 20 URLs total (in case rounding leads to more)
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+ selected_indices = sorted(random.sample(selected_indices, total_urls))
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+ # Create URLs
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+ _URLs = [f"https://ftp.ncbi.nlm.nih.gov/pubmed/baseline/pubmed25n{i:04d}.xml.gz" for i in selected_indices]
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  # Copyright Ferry Boender, released under the MIT license.
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  # Modified by @Narsil to handle more oddities