Datasets:
Modalities:
Text
Formats:
csv
Languages:
English
Size:
< 1K
Tags:
biohacking
wellness-technology
structured-data
machine-readable
interoperability
reproducibility
License:
| param( | |
| [string]$Root = (Split-Path -Parent $PSScriptRoot) | |
| ) | |
| $ErrorActionPreference = "Stop" | |
| $identityPath = Join-Path $Root "project_identity.json" | |
| $packagePath = Join-Path $Root "datapackage.json" | |
| if (-not (Test-Path $identityPath)) { | |
| throw "project_identity.json not found." | |
| } | |
| if (-not (Test-Path $packagePath)) { | |
| throw "datapackage.json not found." | |
| } | |
| $identity = Get-Content $identityPath -Raw | ConvertFrom-Json | |
| $package = Get-Content $packagePath -Raw | ConvertFrom-Json | |
| $projectVersion = $identity.release.project_version | |
| $datasetVersion = $identity.release.dataset_version | |
| $releaseStatus = $identity.release.release_status | |
| $releaseDoi = $identity.release.release_doi | |
| $conceptDoi = $identity.release.concept_doi | |
| if ($projectVersion -ne "1.5.0") { | |
| throw "Expected project version 1.5.0 but found $projectVersion" | |
| } | |
| if ($datasetVersion -ne "1.2") { | |
| throw "Expected canonical dataset version 1.2 but found $datasetVersion" | |
| } | |
| if ($releaseStatus -ne "published") { | |
| throw "Expected release status published but found $releaseStatus" | |
| } | |
| if ($releaseDoi -ne "10.5281/zenodo.21862535") { | |
| throw "Published v1.5 release DOI must equal 10.5281/zenodo.21862535." | |
| } | |
| $stageRoot = Join-Path $Root "build\generated" | |
| $stage = Join-Path $stageRoot "v1.5.0" | |
| if (Test-Path $stageRoot) { | |
| Remove-Item $stageRoot -Recurse -Force | |
| } | |
| New-Item -ItemType Directory -Force -Path $stage | Out-Null | |
| $textExtensions = @( | |
| ".json", | |
| ".jsonld", | |
| ".jsonl", | |
| ".csv", | |
| ".md", | |
| ".txt", | |
| ".cff", | |
| ".ps1", | |
| ".yml", | |
| ".yaml" | |
| ) | |
| function Copy-CanonicalFile { | |
| param( | |
| [string]$Source, | |
| [string]$Destination | |
| ) | |
| $destinationDirectory = Split-Path -Parent $Destination | |
| if (-not (Test-Path $destinationDirectory)) { | |
| New-Item -ItemType Directory -Force -Path $destinationDirectory | Out-Null | |
| } | |
| $extension = [System.IO.Path]::GetExtension($Source).ToLowerInvariant() | |
| if ($textExtensions -contains $extension) { | |
| $text = Get-Content $Source -Raw | |
| $text = $text.Replace("`r`n", "`n").Replace("`r", "`n") | |
| [System.IO.File]::WriteAllText( | |
| $Destination, | |
| $text, | |
| [System.Text.UTF8Encoding]::new($false) | |
| ) | |
| } | |
| else { | |
| Copy-Item $Source $Destination -Force | |
| } | |
| } | |
| function Copy-CanonicalFolder { | |
| param( | |
| [string]$RelativeFolder | |
| ) | |
| $sourceFolder = Join-Path $Root $RelativeFolder | |
| if (-not (Test-Path $sourceFolder)) { | |
| throw "Required source folder missing: $RelativeFolder" | |
| } | |
| Get-ChildItem $sourceFolder -Recurse -File | ForEach-Object { | |
| $relativePath = $_.FullName.Substring($sourceFolder.Length).TrimStart("\") | |
| $destination = Join-Path (Join-Path $stage $RelativeFolder) $relativePath | |
| Copy-CanonicalFile -Source $_.FullName -Destination $destination | |
| } | |
| } | |
| $coreFiles = @( | |
| "README.md", | |
| "CHANGELOG.md", | |
| "RELEASE_NOTES_v1.5.md", | |
| "LICENSE_DATA.txt", | |
| "CITATION.cff", | |
| "DEPLOYMENT_CHECKLIST.md", | |
| "VALIDATION_SUMMARY.txt", | |
| "WEBSITE_PUBLICATION_MAP.md", | |
| "VERSION_HISTORY.md", | |
| "KNOWN_LIMITATIONS.md", | |
| "METADATA_CORRECTION_2026-08-07.md", | |
| "project_metadata.json", | |
| "project_identity.json", | |
| "supersession_registry.json", | |
| "provenance.generated.json", | |
| "datapackage.json", | |
| "DATA_DICTIONARY.md", | |
| "catalog.jsonld", | |
| "ro-crate-metadata.json", | |
| "manifest.json", | |
| "ai-reference.md", | |
| "llms.txt" | |
| ) | |
| foreach ($file in $coreFiles) { | |
| $source = Join-Path $Root $file | |
| if (-not (Test-Path $source)) { | |
| throw "Required source file missing: $file" | |
| } | |
| Copy-CanonicalFile ` | |
| -Source $source ` | |
| -Destination (Join-Path $stage $file) | |
| } | |
| $folders = @( | |
| "data", | |
| "schemas", | |
| "methodology" | |
| ) | |
| foreach ($folder in $folders) { | |
| Copy-CanonicalFolder -RelativeFolder $folder | |
| } | |
| $toolingFiles = @( | |
| "build/generate_interoperability.ps1", | |
| "build/generate_catalog_jsonld.ps1", | |
| "build/generate_ro_crate.ps1", | |
| "build/generate_jsonl.ps1", | |
| "build/generate_project_identity.ps1", | |
| "build/generate_supersession_registry.ps1", | |
| "build/generate_provenance.ps1", | |
| "validation/validate_project_metadata.ps1" | |
| ) | |
| foreach ($file in $toolingFiles) { | |
| $source = Join-Path $Root $file | |
| $destination = Join-Path $stage ("tooling/" + $file) | |
| if (-not (Test-Path $source)) { | |
| throw "Required tooling file missing: $file" | |
| } | |
| Copy-CanonicalFile -Source $source -Destination $destination | |
| } | |
| $jsonErrors = @() | |
| Get-ChildItem $stage -Recurse -File | | |
| Where-Object { | |
| $_.Extension -eq ".json" -or $_.Extension -eq ".jsonld" | |
| } | | |
| ForEach-Object { | |
| try { | |
| Get-Content $_.FullName -Raw | ConvertFrom-Json | Out-Null | |
| } | |
| catch { | |
| $jsonErrors += $_.FullName | |
| } | |
| } | |
| $jsonlErrors = @() | |
| $jsonlRecordCount = 0 | |
| Get-ChildItem $stage -Recurse -File -Filter "*.jsonl" | | |
| ForEach-Object { | |
| $jsonlFile = $_.FullName | |
| $lineNumber = 0 | |
| Get-Content $jsonlFile | ForEach-Object { | |
| $lineNumber++ | |
| if ([string]::IsNullOrWhiteSpace($_)) { | |
| return | |
| } | |
| try { | |
| $_ | ConvertFrom-Json | Out-Null | |
| $script:jsonlRecordCount++ | |
| } | |
| catch { | |
| $script:jsonlErrors += "${jsonlFile}:$lineNumber" | |
| } | |
| } | |
| } | |
| if ($jsonErrors.Count -gt 0 -or $jsonlErrors.Count -gt 0) { | |
| Write-Host "" | |
| Write-Host "RELEASE BUILD FAILED" | |
| Write-Host "--------------------" | |
| foreach ($file in $jsonErrors) { | |
| Write-Host "FAIL JSON:" $file | |
| } | |
| foreach ($record in $jsonlErrors) { | |
| Write-Host "FAIL JSONL:" $record | |
| } | |
| exit 1 | |
| } | |
| $hashLines = Get-ChildItem $stage -Recurse -File | | |
| Where-Object { | |
| $_.Name -ne "BUILD_MANIFEST_SHA256.txt" | |
| } | | |
| ForEach-Object { | |
| $relative = $_.FullName.Substring($stage.Length).TrimStart("\").Replace("\", "/") | |
| $hash = (Get-FileHash $_.FullName -Algorithm SHA256).Hash.ToLowerInvariant() | |
| "$hash $relative" | |
| } | | |
| Sort-Object | |
| $manifestOut = Join-Path $stage "BUILD_MANIFEST_SHA256.txt" | |
| [System.IO.File]::WriteAllText( | |
| $manifestOut, | |
| (($hashLines -join "`n") + "`n"), | |
| [System.Text.UTF8Encoding]::new($false) | |
| ) | |
| $packageFileCount = ( | |
| Get-ChildItem $stage -Recurse -File | |
| ).Count | |
| Write-Host "" | |
| Write-Host "V1.5 RELEASE BUILD PASSED" | |
| Write-Host "-------------------------------" | |
| Write-Host "Project version:" $projectVersion | |
| Write-Host "Dataset version:" $datasetVersion | |
| Write-Host "Release status:" $releaseStatus | |
| Write-Host "Release DOI:" $(if ($null -eq $releaseDoi) { "NULL" } else { $releaseDoi }) | |
| Write-Host "Concept DOI:" $conceptDoi | |
| Write-Host "Data Package resources:" $package.resources.Count | |
| Write-Host "JSONL records:" $jsonlRecordCount | |
| Write-Host "JSON parse errors:" $jsonErrors.Count | |
| Write-Host "JSONL parse errors:" $jsonlErrors.Count | |
| Write-Host "Package files:" $packageFileCount | |
| Write-Host "Generated package:" | |
| Write-Host $stage | |
| Write-Host "Build manifest:" | |
| Write-Host $manifestOut | |
| exit 0 | |