open-biohacking-data / build /generate_catalog_jsonld.ps1
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Update mirror for v1.5.0 interoperability and reproducibility release
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param(
[string]$Root = (Split-Path -Parent $PSScriptRoot)
)
$ErrorActionPreference = "Stop"
$datapackagePath = Join-Path $Root "datapackage.json"
$outputPath = Join-Path $Root "catalog.jsonld"
if (-not (Test-Path $datapackagePath)) {
throw "datapackage.json not found: $datapackagePath"
}
$package = Get-Content $datapackagePath -Raw | ConvertFrom-Json
$canonicalResources = @(
$package.resources |
Where-Object { $_.role -eq "canonical-subject-dataset" } |
Sort-Object name
)
$groups = $canonicalResources |
Group-Object {
$_.name `
-replace '-csv$','' `
-replace '-json$',''
} |
Sort-Object Name
$datasets = foreach ($group in $groups) {
$first = $group.Group | Select-Object -First 1
$datasetName = $group.Name `
-replace '-v1\.2$','' `
-replace '-',' '
$datasetTitle = [System.Globalization.CultureInfo]::InvariantCulture.TextInfo.ToTitleCase($datasetName)
$datasetSlug = $group.Name -replace '-v1\.2$',''
$datasetUrl = "https://www.holistixintl.com/pages/$datasetSlug"
$distributions = foreach ($resource in ($group.Group | Sort-Object name)) {
$rawUrl = "https://raw.githubusercontent.com/holistixintlsite-commits/open-biohacking-data/main/$($resource.path)"
[ordered]@{
"@type" = "DataDownload"
name = $resource.name
encodingFormat = $resource.mediatype
contentUrl = $rawUrl
contentSize = "$($resource.bytes) bytes"
sha256 = ($resource.hash -replace '^sha256:','')
}
}
$jsonlPath = "data/jsonl/v1.2/$($group.Name).jsonl"
$jsonlFullPath = Join-Path $Root ($jsonlPath -replace '/','\')
if (-not (Test-Path $jsonlFullPath)) {
throw "Missing JSONL distribution: $jsonlPath"
}
$jsonlRawUrl = "https://raw.githubusercontent.com/holistixintlsite-commits/open-biohacking-data/main/$jsonlPath"
$jsonlText = Get-Content $jsonlFullPath -Raw
$jsonlNormalized = $jsonlText -replace "`r`n", "`n" -replace "`r", "`n"
$jsonlBytes = [System.Text.UTF8Encoding]::new($false).GetBytes($jsonlNormalized)
$sha = [System.Security.Cryptography.SHA256]::Create()
try {
$jsonlHash = ([System.BitConverter]::ToString($sha.ComputeHash($jsonlBytes))).Replace("-","").ToLowerInvariant()
}
finally {
$sha.Dispose()
}
$distributions += [ordered]@{
"@type" = "DataDownload"
name = "$($group.Name)-jsonl"
encodingFormat = "application/jsonl"
contentUrl = $jsonlRawUrl
contentSize = "$($jsonlBytes.Length) bytes"
sha256 = $jsonlHash
}
[ordered]@{
"@type" = "Dataset"
"@id" = $datasetUrl
url = $datasetUrl
name = $datasetTitle
identifier = $group.Name
version = $first.dataset_version
isPartOf = [ordered]@{
"@id" = "https://doi.org/10.5281/zenodo.20978709"
}
license = "https://creativecommons.org/licenses/by/4.0/"
distribution = @($distributions)
}
}
$catalog = [ordered]@{
"@context" = "https://schema.org"
"@type" = "DataCatalog"
"@id" = "https://doi.org/10.5281/zenodo.20978709"
name = "Holistix Open Biohacking Data Project"
description = "Open structured reference data for wellness technologies, product specifications, safety information, evidence metadata, claim boundaries, provenance, and machine-readable product intelligence."
url = "https://www.holistixintl.com/pages/open-biohacking-data-index"
version = $package.version
license = "https://creativecommons.org/licenses/by/4.0/"
codeRepository = "https://github.com/holistixintlsite-commits/open-biohacking-data"
dataset = @($datasets)
}
$catalog |
ConvertTo-Json -Depth 100 |
Set-Content $outputPath -Encoding utf8
Write-Host ""
Write-Host "JSON-LD CATALOG GENERATION PASSED"
Write-Host "---------------------------------"
Write-Host "Project version:" $package.version
Write-Host "Canonical datasets:" $datasets.Count
Write-Host "Catalog:" $outputPath