open-biohacking-data / validation /validate_project_metadata.ps1
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Update mirror for v1.5.0 interoperability and reproducibility release
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param(
[string]$Root = (Split-Path -Parent $PSScriptRoot)
)
$ErrorActionPreference = "Stop"
$errors = @()
function Add-Error {
param([string]$Message)
$script:errors += $Message
}
function Require-File {
param([string]$RelativePath)
$path = Join-Path $Root $RelativePath
if (-not (Test-Path $path)) {
Add-Error "Required file missing: $RelativePath"
return $null
}
return $path
}
# ---------------------------------
# Canonical project metadata
# ---------------------------------
$metadataPath = Require-File "project_metadata.json"
if ($metadataPath) {
try {
$m = Get-Content $metadataPath -Raw | ConvertFrom-Json
}
catch {
Add-Error "project_metadata.json is invalid JSON."
$m = $null
}
}
if ($m) {
if ($m.project.project_version -ne "1.5.0") {
Add-Error "Unexpected project version: $($m.project.project_version)"
}
if ($m.project.dataset_version -ne "1.2") {
Add-Error "Unexpected dataset version: $($m.project.dataset_version)"
}
if ($m.project.release_status -ne "published") {
Add-Error "Project release_status is not published."
}
if ($m.identifiers.current_release_doi -ne "10.5281/zenodo.21862535") {
Add-Error "Unexpected current release DOI: $($m.identifiers.current_release_doi)"
}
if ($m.identifiers.concept_doi -ne "10.5281/zenodo.20978709") {
Add-Error "Unexpected concept DOI: $($m.identifiers.concept_doi)"
}
if ($m.license.identifier -ne "CC-BY-4.0") {
Add-Error "Unexpected license identifier: $($m.license.identifier)"
}
if ($m.metadata_policy.canonical_source -ne "project_metadata.json") {
Add-Error "Canonical metadata source is not project_metadata.json."
}
}
# ---------------------------------
# Repository project.json
# ---------------------------------
$projectPath = Require-File "data\master\project.json"
if ($projectPath) {
try {
$project = Get-Content $projectPath -Raw | ConvertFrom-Json
if ($project.zenodo_latest -ne "https://zenodo.org/records/21862535") {
Add-Error "Incorrect zenodo_latest in data\master\project.json: $($project.zenodo_latest)"
}
}
catch {
Add-Error "data\master\project.json is invalid JSON."
}
}
# ---------------------------------
# v1.4 AI answer manifest
# ---------------------------------
$manifestPath = Require-File "data\master\holistix-ai-answer-manifest-v1.4.json"
if ($manifestPath) {
try {
$manifest = Get-Content $manifestPath -Raw | ConvertFrom-Json
$current = $manifest.archive_and_provenance.current_archived_project_release
$previous = $manifest.archive_and_provenance.previous_release
if ($current.version -ne "1.4") {
Add-Error "AI manifest current archived version is not 1.4."
}
if ($current.doi -ne "https://doi.org/10.5281/zenodo.21574706") {
Add-Error "AI manifest current archived DOI is incorrect."
}
if ($previous.version -ne "1.3") {
Add-Error "AI manifest previous release is not 1.3."
}
if ($previous.doi -ne "https://doi.org/10.5281/zenodo.21033668") {
Add-Error "AI manifest previous release DOI is incorrect."
}
}
catch {
Add-Error "v1.4 AI answer manifest is invalid JSON."
}
}
# ---------------------------------
# Required transparency files
# ---------------------------------
$requiredDocs = @(
"README.md",
"RELEASE_NOTES_v1.4.md",
"LICENSE_DATA.txt",
"VERSION_HISTORY.md",
"KNOWN_LIMITATIONS.md",
"METADATA_CORRECTION_2026-08-07.md"
)
foreach ($doc in $requiredDocs) {
Require-File $doc | Out-Null
}
# ---------------------------------
# Detect stale current-release text
# Historical v1.3 references are allowed.
# ---------------------------------
$staleChecks = @(
@{
File = "VERSION_HISTORY.md"
Text = "Current project trust-layer release: **v1.3**"
},
@{
File = "VERSION_HISTORY.md"
Text = "Current archived project release: **v1.3**"
},
@{
File = "VERSION_HISTORY.md"
Text = "Current version DOI for archived v1.3 release:"
},
@{
File = "KNOWN_LIMITATIONS.md"
Text = "Project release: v1.3"
},
@{
File = "KNOWN_LIMITATIONS.md"
Text = "Current archived release DOI for the v1.3 trust-layer release:"
},
@{
File = "README.md"
Text = "exact DOI for v1.4 should be added after"
},
@{
File = "RELEASE_NOTES_v1.4.md"
Text = "exact DOI for v1.4 will be assigned when"
},
@{
File = "LICENSE_DATA.txt"
Text = "License decision required before public v1.4 release"
}
)
foreach ($check in $staleChecks) {
$path = Join-Path $Root $check.File
if (Test-Path $path) {
$content = Get-Content $path -Raw
if ($content.Contains($check.Text)) {
Add-Error "Stale current-release metadata found in $($check.File): $($check.Text)"
}
}
}
# ---------------------------------
# Parse every repository JSON file
# Exclude .git only.
# ---------------------------------
$jsonErrors = @()
Get-ChildItem $Root -Recurse -File -Filter "*.json" |
Where-Object {
$_.FullName -notmatch '[\\/]\.git[\\/]'
} |
ForEach-Object {
$jsonFile = $_.FullName
try {
Get-Content $jsonFile -Raw | ConvertFrom-Json | Out-Null
}
catch {
$jsonErrors += $jsonFile
}
}
foreach ($file in $jsonErrors) {
Add-Error "JSON parse failure: $file"
}
# ---------------------------------
# Result
# ---------------------------------
if ($errors.Count -gt 0) {
Write-Host ""
Write-Host "PROJECT METADATA VALIDATION FAILED"
Write-Host "----------------------------------"
foreach ($errorMessage in $errors) {
Write-Host "FAIL: $errorMessage"
}
Write-Host ""
Write-Host "Errors:" $errors.Count
exit 1
}
Write-Host ""
Write-Host "PROJECT METADATA VALIDATION PASSED"
Write-Host "----------------------------------"
Write-Host "Project version: 1.5.0"
Write-Host "Dataset version: 1.2"
Write-Host "Current DOI: 10.5281/zenodo.21862535"
Write-Host "Concept DOI: 10.5281/zenodo.20978709"
Write-Host "License: CC-BY-4.0"
Write-Host "Repository JSON parse errors: 0"
Write-Host ""
Write-Host "No metadata drift detected."
exit 0