"""Create deterministic 600-example GenomeQA subsets balanced by subtask.""" import argparse import random from collections import Counter from pathlib import Path from datasets import load_dataset DATASET_ID = "HuggingFaceBio/genomeqa" SOURCE_REVISION = "a71ab7e0e72b8eca7acd4475744dccd0159b20be" SOURCE_CONFIGS = ("binary", "mcq") SAMPLES_PER_SUBTASK = 100 SEED = 42 def create_subset(config: str, output_dir: Path, seed: int) -> None: dataset = load_dataset(DATASET_ID, config, split="train", revision=SOURCE_REVISION) subtasks = sorted(set(dataset["subtask"])) rng = random.Random(f"{seed}:{config}") selected_indices = [] for subtask in subtasks: candidate_indices = [index for index, value in enumerate(dataset["subtask"]) if value == subtask] if len(candidate_indices) < SAMPLES_PER_SUBTASK: raise ValueError(f"{subtask} has only {len(candidate_indices)} examples") selected_indices.extend(rng.sample(candidate_indices, SAMPLES_PER_SUBTASK)) rng.shuffle(selected_indices) subset = dataset.select(selected_indices) expected_counts = dict.fromkeys(subtasks, SAMPLES_PER_SUBTASK) if Counter(subset["subtask"]) != expected_counts: raise RuntimeError("Generated subset is not balanced by subtask") config_dir = output_dir / f"{config}_600" config_dir.mkdir(parents=True, exist_ok=True) output_path = config_dir / "train-00000-of-00001.parquet" subset.to_parquet(output_path) def main() -> None: parser = argparse.ArgumentParser() parser.add_argument("--output-dir", type=Path, default=Path.cwd()) parser.add_argument("--seed", type=int, default=SEED) args = parser.parse_args() for config in SOURCE_CONFIGS: create_subset(config, args.output_dir, args.seed) if __name__ == "__main__": main()