mauryzio commited on
Commit
915f93e
·
verified ·
1 Parent(s): ee62d1d

Add syn_mouse benchmark split

Browse files
Files changed (2) hide show
  1. README.md +73 -1
  2. syn_mouse/test-00000-of-00001.parquet +3 -0
README.md CHANGED
@@ -12,6 +12,10 @@ configs:
12
  data_files:
13
  - split: test
14
  path: syn_human/test-*
 
 
 
 
15
  - config_name: synonymous_codons
16
  data_files:
17
  - split: train
@@ -21,7 +25,7 @@ configs:
21
  - split: train
22
  path: tata/data.parquet
23
  dataset_info:
24
- config_name: syn_human
25
  features:
26
  - name: benchmark_id
27
  dtype: string
@@ -89,6 +93,74 @@ dataset_info:
89
  num_examples: 20000
90
  download_size: 152353795
91
  dataset_size: 334444599
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
92
  ---
93
 
94
  # Carbon Perturbation Bench
 
12
  data_files:
13
  - split: test
14
  path: syn_human/test-*
15
+ - config_name: syn_mouse
16
+ data_files:
17
+ - split: test
18
+ path: syn_mouse/test-*
19
  - config_name: synonymous_codons
20
  data_files:
21
  - split: train
 
25
  - split: train
26
  path: tata/data.parquet
27
  dataset_info:
28
+ - config_name: syn_human
29
  features:
30
  - name: benchmark_id
31
  dtype: string
 
93
  num_examples: 20000
94
  download_size: 152353795
95
  dataset_size: 334444599
96
+ - config_name: syn_mouse
97
+ features:
98
+ - name: benchmark_id
99
+ dtype: string
100
+ - name: annotation_source
101
+ dtype: string
102
+ - name: genome_assembly
103
+ dtype: string
104
+ - name: codon_usage_source
105
+ dtype: string
106
+ - name: recoding_mode
107
+ dtype: string
108
+ - name: optimization_rate
109
+ dtype: float64
110
+ - name: random_seed
111
+ dtype: int64
112
+ - name: window_size_bp
113
+ dtype: int64
114
+ - name: species
115
+ dtype: string
116
+ - name: chr
117
+ dtype: string
118
+ - name: strand
119
+ dtype: string
120
+ - name: cds_genome_start
121
+ dtype: int64
122
+ - name: cds_genome_end
123
+ dtype: int64
124
+ - name: transcript_id
125
+ dtype: string
126
+ - name: gene_id
127
+ dtype: string
128
+ - name: gene_name
129
+ dtype: string
130
+ - name: exon_rank
131
+ dtype: int64
132
+ - name: is_first_exon
133
+ dtype: int64
134
+ - name: cds_start_in_seq
135
+ dtype: int64
136
+ - name: cds_end_in_seq
137
+ dtype: int64
138
+ - name: cds_length
139
+ dtype: int64
140
+ - name: patch_start_in_seq
141
+ dtype: int64
142
+ - name: patch_end_in_seq
143
+ dtype: int64
144
+ - name: patch_length
145
+ dtype: int64
146
+ - name: n_codons_total
147
+ dtype: int64
148
+ - name: n_codons_eligible
149
+ dtype: int64
150
+ - name: n_codons_changed
151
+ dtype: int64
152
+ - name: fraction_codons_changed
153
+ dtype: float64
154
+ - name: original_sequence
155
+ dtype: string
156
+ - name: sequence
157
+ dtype: string
158
+ splits:
159
+ - name: test
160
+ num_bytes: 334604972
161
+ num_examples: 20000
162
+ download_size: 152298422
163
+ dataset_size: 334604972
164
  ---
165
 
166
  # Carbon Perturbation Bench
syn_mouse/test-00000-of-00001.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d7c7c1c1e3d708ad744ece05f21ca7dd9f7df4680f309804ac895f9ff68c77a8
3
+ size 152298422