Datasets:
Add syn_mouse benchmark split
Browse files- README.md +73 -1
- syn_mouse/test-00000-of-00001.parquet +3 -0
README.md
CHANGED
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@@ -12,6 +12,10 @@ configs:
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data_files:
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- split: test
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path: syn_human/test-*
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- config_name: synonymous_codons
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data_files:
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- split: train
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@@ -21,7 +25,7 @@ configs:
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- split: train
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path: tata/data.parquet
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dataset_info:
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-
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features:
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- name: benchmark_id
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dtype: string
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@@ -89,6 +93,74 @@ dataset_info:
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num_examples: 20000
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download_size: 152353795
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dataset_size: 334444599
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---
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# Carbon Perturbation Bench
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data_files:
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- split: test
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path: syn_human/test-*
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- config_name: syn_mouse
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data_files:
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- split: test
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path: syn_mouse/test-*
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- config_name: synonymous_codons
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data_files:
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- split: train
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- split: train
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path: tata/data.parquet
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dataset_info:
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+
- config_name: syn_human
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features:
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- name: benchmark_id
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dtype: string
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num_examples: 20000
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download_size: 152353795
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dataset_size: 334444599
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- config_name: syn_mouse
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features:
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- name: benchmark_id
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dtype: string
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- name: annotation_source
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dtype: string
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- name: genome_assembly
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dtype: string
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- name: codon_usage_source
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dtype: string
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- name: recoding_mode
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dtype: string
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- name: optimization_rate
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dtype: float64
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- name: random_seed
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dtype: int64
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- name: window_size_bp
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dtype: int64
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- name: species
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dtype: string
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- name: chr
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dtype: string
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- name: strand
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dtype: string
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- name: cds_genome_start
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dtype: int64
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- name: cds_genome_end
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dtype: int64
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- name: transcript_id
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dtype: string
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- name: gene_id
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dtype: string
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- name: gene_name
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dtype: string
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- name: exon_rank
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dtype: int64
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- name: is_first_exon
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dtype: int64
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- name: cds_start_in_seq
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dtype: int64
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- name: cds_end_in_seq
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dtype: int64
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- name: cds_length
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dtype: int64
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- name: patch_start_in_seq
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dtype: int64
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- name: patch_end_in_seq
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dtype: int64
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- name: patch_length
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dtype: int64
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- name: n_codons_total
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dtype: int64
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- name: n_codons_eligible
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dtype: int64
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- name: n_codons_changed
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dtype: int64
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- name: fraction_codons_changed
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dtype: float64
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- name: original_sequence
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dtype: string
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- name: sequence
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dtype: string
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splits:
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- name: test
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num_bytes: 334604972
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num_examples: 20000
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download_size: 152298422
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dataset_size: 334604972
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---
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# Carbon Perturbation Bench
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syn_mouse/test-00000-of-00001.parquet
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
+
version https://git-lfs.github.com/spec/v1
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+
oid sha256:d7c7c1c1e3d708ad744ece05f21ca7dd9f7df4680f309804ac895f9ff68c77a8
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+
size 152298422
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