Datasets:
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# TraitGym + 8,192 bp pre-extracted windows
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This dataset is a **
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The variants, labels and matched controls are **identical** to the original `songlab/TraitGym` `_matched_9` configs.
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## Configs
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- **`mendelian_traits`** (n = 3,380): 338 putative-causal non-coding variants from 113 monogenic Mendelian diseases (curated from OMIM), matched 9:1 against gnomAD common-variant controls on chromosome × consequence × TSS-distance.
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- **`complex_traits`** (n = 11,400): 1,140 putative-causal non-coding variants from 83 polygenic UK BioBank traits (PIP > 0.9 from statistical fine-mapping), matched 9:1 against PIP < 0.01 controls on chromosome × consequence × TSS-distance × MAF × LD score.
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Source datasets:
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- [`songlab/TraitGym/mendelian_traits_matched_9`](https://huggingface.co/datasets/songlab/TraitGym)
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- [`songlab/TraitGym/complex_traits_matched_9`](https://huggingface.co/datasets/songlab/TraitGym)
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## Schema
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| column | description |
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# TraitGym + 8,192 bp pre-extracted windows
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This dataset is a **repackaging** of [`songlab/TraitGym`](https://huggingface.co/datasets/songlab/TraitGym) (Benegas, Eraslan & Song, bioRxiv 2025.02.11.637758), with one extra step: for every variant we pre-extract the 8,192 bp window centered on the variant from the hg38 reference, plus the same window with the alt allele substituted.
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The variants, labels and matched controls are **identical** to the original `songlab/TraitGym` `_matched_9` configs.
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## Configs
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- **`mendelian_traits`** (n = 3,380): 338 putative-causal non-coding variants from 113 monogenic Mendelian diseases (curated from OMIM), matched 9:1 against gnomAD common-variant controls on chromosome × consequence × TSS-distance.
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- **`complex_traits`** (n = 11,400): 1,140 putative-causal non-coding variants from 83 polygenic UK BioBank traits (PIP > 0.9 from statistical fine-mapping), matched 9:1 against PIP < 0.01 controls on chromosome × consequence × TSS-distance × MAF × LD score.
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## Schema
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| column | description |
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