Record verified TCGA chief branch integration
Browse filesUpdate cumulative upload ledger and dataset card after branch integration job 8377762.
- README.md +1014 -16
- metadata/upload_status.json +212 -163
README.md
CHANGED
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@@ -1,23 +1,1021 @@
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|
| 2 |
|
| 3 |
-
|
| 4 |
|
| 5 |
-
|
| 6 |
|
| 7 |
-
|
| 8 |
-
- `titan`
|
| 9 |
-
- `conch_v1`
|
| 10 |
-
- `uni_v1`
|
| 11 |
-
- `uni_v2`
|
| 12 |
-
- `ctranspath`
|
| 13 |
|
| 14 |
-
|
|
|
|
|
|
|
| 15 |
|
| 16 |
-
|
| 17 |
-
|
| 18 |
-
-
|
| 19 |
-
-
|
|
|
|
|
|
|
|
|
|
|
|
|
| 20 |
- H5 validation failures: 0
|
| 21 |
|
| 22 |
-
|
| 23 |
-
|
|
|
|
|
|
|
|
|
|
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|
|
| 1 |
+
---
|
| 2 |
+
configs:
|
| 3 |
+
- config_name: chief_10x
|
| 4 |
+
data_files:
|
| 5 |
+
- split: TCGA_ACC
|
| 6 |
+
path: data/TCGA-ACC/chief/10x/*.parquet
|
| 7 |
+
- split: TCGA_BLCA
|
| 8 |
+
path: data/TCGA-BLCA/chief/10x/*.parquet
|
| 9 |
+
- split: TCGA_BRCA
|
| 10 |
+
path: data/TCGA-BRCA/chief/10x/*.parquet
|
| 11 |
+
- split: TCGA_CESC
|
| 12 |
+
path: data/TCGA-CESC/chief/10x/*.parquet
|
| 13 |
+
- split: TCGA_CHOL
|
| 14 |
+
path: data/TCGA-CHOL/chief/10x/*.parquet
|
| 15 |
+
- split: TCGA_COAD
|
| 16 |
+
path: data/TCGA-COAD/chief/10x/*.parquet
|
| 17 |
+
- split: TCGA_DLBC
|
| 18 |
+
path: data/TCGA-DLBC/chief/10x/*.parquet
|
| 19 |
+
- split: TCGA_ESCA
|
| 20 |
+
path: data/TCGA-ESCA/chief/10x/*.parquet
|
| 21 |
+
- split: TCGA_GBM
|
| 22 |
+
path: data/TCGA-GBM/chief/10x/*.parquet
|
| 23 |
+
- split: TCGA_HNSC
|
| 24 |
+
path: data/TCGA-HNSC/chief/10x/*.parquet
|
| 25 |
+
- split: TCGA_KICH
|
| 26 |
+
path: data/TCGA-KICH/chief/10x/*.parquet
|
| 27 |
+
- split: TCGA_KIRC
|
| 28 |
+
path: data/TCGA-KIRC/chief/10x/*.parquet
|
| 29 |
+
- split: TCGA_KIRP
|
| 30 |
+
path: data/TCGA-KIRP/chief/10x/*.parquet
|
| 31 |
+
- split: TCGA_LGG
|
| 32 |
+
path: data/TCGA-LGG/chief/10x/*.parquet
|
| 33 |
+
- split: TCGA_LIHC
|
| 34 |
+
path: data/TCGA-LIHC/chief/10x/*.parquet
|
| 35 |
+
- split: TCGA_LUAD
|
| 36 |
+
path: data/TCGA-LUAD/chief/10x/*.parquet
|
| 37 |
+
- split: TCGA_LUSC
|
| 38 |
+
path: data/TCGA-LUSC/chief/10x/*.parquet
|
| 39 |
+
- split: TCGA_MESO
|
| 40 |
+
path: data/TCGA-MESO/chief/10x/*.parquet
|
| 41 |
+
- split: TCGA_OV
|
| 42 |
+
path: data/TCGA-OV/chief/10x/*.parquet
|
| 43 |
+
- split: TCGA_PAAD
|
| 44 |
+
path: data/TCGA-PAAD/chief/10x/*.parquet
|
| 45 |
+
- split: TCGA_PCPG
|
| 46 |
+
path: data/TCGA-PCPG/chief/10x/*.parquet
|
| 47 |
+
- split: TCGA_PRAD
|
| 48 |
+
path: data/TCGA-PRAD/chief/10x/*.parquet
|
| 49 |
+
- split: TCGA_READ
|
| 50 |
+
path: data/TCGA-READ/chief/10x/*.parquet
|
| 51 |
+
- split: TCGA_SARC
|
| 52 |
+
path: data/TCGA-SARC/chief/10x/*.parquet
|
| 53 |
+
- split: TCGA_SKCM
|
| 54 |
+
path: data/TCGA-SKCM/chief/10x/*.parquet
|
| 55 |
+
- split: TCGA_STAD
|
| 56 |
+
path: data/TCGA-STAD/chief/10x/*.parquet
|
| 57 |
+
- split: TCGA_THCA
|
| 58 |
+
path: data/TCGA-THCA/chief/10x/*.parquet
|
| 59 |
+
- split: TCGA_THYM
|
| 60 |
+
path: data/TCGA-THYM/chief/10x/*.parquet
|
| 61 |
+
- split: TCGA_UCEC
|
| 62 |
+
path: data/TCGA-UCEC/chief/10x/*.parquet
|
| 63 |
+
- split: TCGA_UCS
|
| 64 |
+
path: data/TCGA-UCS/chief/10x/*.parquet
|
| 65 |
+
- split: TCGA_UVM
|
| 66 |
+
path: data/TCGA-UVM/chief/10x/*.parquet
|
| 67 |
+
- config_name: conch_v1_10x
|
| 68 |
+
data_files:
|
| 69 |
+
- split: TCGA_ACC
|
| 70 |
+
path: data/TCGA-ACC/conch_v1/10x/*.parquet
|
| 71 |
+
- split: TCGA_BLCA
|
| 72 |
+
path: data/TCGA-BLCA/conch_v1/10x/*.parquet
|
| 73 |
+
- split: TCGA_BRCA
|
| 74 |
+
path: data/TCGA-BRCA/conch_v1/10x/*.parquet
|
| 75 |
+
- split: TCGA_CESC
|
| 76 |
+
path: data/TCGA-CESC/conch_v1/10x/*.parquet
|
| 77 |
+
- split: TCGA_CHOL
|
| 78 |
+
path: data/TCGA-CHOL/conch_v1/10x/*.parquet
|
| 79 |
+
- split: TCGA_COAD
|
| 80 |
+
path: data/TCGA-COAD/conch_v1/10x/*.parquet
|
| 81 |
+
- split: TCGA_DLBC
|
| 82 |
+
path: data/TCGA-DLBC/conch_v1/10x/*.parquet
|
| 83 |
+
- split: TCGA_ESCA
|
| 84 |
+
path: data/TCGA-ESCA/conch_v1/10x/*.parquet
|
| 85 |
+
- split: TCGA_GBM
|
| 86 |
+
path: data/TCGA-GBM/conch_v1/10x/*.parquet
|
| 87 |
+
- split: TCGA_HNSC
|
| 88 |
+
path: data/TCGA-HNSC/conch_v1/10x/*.parquet
|
| 89 |
+
- split: TCGA_KICH
|
| 90 |
+
path: data/TCGA-KICH/conch_v1/10x/*.parquet
|
| 91 |
+
- split: TCGA_KIRC
|
| 92 |
+
path: data/TCGA-KIRC/conch_v1/10x/*.parquet
|
| 93 |
+
- split: TCGA_KIRP
|
| 94 |
+
path: data/TCGA-KIRP/conch_v1/10x/*.parquet
|
| 95 |
+
- split: TCGA_LGG
|
| 96 |
+
path: data/TCGA-LGG/conch_v1/10x/*.parquet
|
| 97 |
+
- split: TCGA_LIHC
|
| 98 |
+
path: data/TCGA-LIHC/conch_v1/10x/*.parquet
|
| 99 |
+
- split: TCGA_LUAD
|
| 100 |
+
path: data/TCGA-LUAD/conch_v1/10x/*.parquet
|
| 101 |
+
- split: TCGA_LUSC
|
| 102 |
+
path: data/TCGA-LUSC/conch_v1/10x/*.parquet
|
| 103 |
+
- split: TCGA_MESO
|
| 104 |
+
path: data/TCGA-MESO/conch_v1/10x/*.parquet
|
| 105 |
+
- split: TCGA_OV
|
| 106 |
+
path: data/TCGA-OV/conch_v1/10x/*.parquet
|
| 107 |
+
- split: TCGA_PAAD
|
| 108 |
+
path: data/TCGA-PAAD/conch_v1/10x/*.parquet
|
| 109 |
+
- split: TCGA_PCPG
|
| 110 |
+
path: data/TCGA-PCPG/conch_v1/10x/*.parquet
|
| 111 |
+
- split: TCGA_PRAD
|
| 112 |
+
path: data/TCGA-PRAD/conch_v1/10x/*.parquet
|
| 113 |
+
- split: TCGA_READ
|
| 114 |
+
path: data/TCGA-READ/conch_v1/10x/*.parquet
|
| 115 |
+
- split: TCGA_SARC
|
| 116 |
+
path: data/TCGA-SARC/conch_v1/10x/*.parquet
|
| 117 |
+
- split: TCGA_SKCM
|
| 118 |
+
path: data/TCGA-SKCM/conch_v1/10x/*.parquet
|
| 119 |
+
- split: TCGA_STAD
|
| 120 |
+
path: data/TCGA-STAD/conch_v1/10x/*.parquet
|
| 121 |
+
- split: TCGA_TGCT
|
| 122 |
+
path: data/TCGA-TGCT/conch_v1/10x/*.parquet
|
| 123 |
+
- split: TCGA_THCA
|
| 124 |
+
path: data/TCGA-THCA/conch_v1/10x/*.parquet
|
| 125 |
+
- split: TCGA_THYM
|
| 126 |
+
path: data/TCGA-THYM/conch_v1/10x/*.parquet
|
| 127 |
+
- split: TCGA_UCEC
|
| 128 |
+
path: data/TCGA-UCEC/conch_v1/10x/*.parquet
|
| 129 |
+
- split: TCGA_UCS
|
| 130 |
+
path: data/TCGA-UCS/conch_v1/10x/*.parquet
|
| 131 |
+
- split: TCGA_UVM
|
| 132 |
+
path: data/TCGA-UVM/conch_v1/10x/*.parquet
|
| 133 |
+
- config_name: conch_v1_20x
|
| 134 |
+
data_files:
|
| 135 |
+
- split: TCGA_ACC
|
| 136 |
+
path: data/TCGA-ACC/conch_v1/20x/*.parquet
|
| 137 |
+
- split: TCGA_BLCA
|
| 138 |
+
path: data/TCGA-BLCA/conch_v1/20x/*.parquet
|
| 139 |
+
- split: TCGA_BRCA
|
| 140 |
+
path: data/TCGA-BRCA/conch_v1/20x/*.parquet
|
| 141 |
+
- split: TCGA_CESC
|
| 142 |
+
path: data/TCGA-CESC/conch_v1/20x/*.parquet
|
| 143 |
+
- split: TCGA_CHOL
|
| 144 |
+
path: data/TCGA-CHOL/conch_v1/20x/*.parquet
|
| 145 |
+
- split: TCGA_COAD
|
| 146 |
+
path: data/TCGA-COAD/conch_v1/20x/*.parquet
|
| 147 |
+
- split: TCGA_DLBC
|
| 148 |
+
path: data/TCGA-DLBC/conch_v1/20x/*.parquet
|
| 149 |
+
- split: TCGA_ESCA
|
| 150 |
+
path: data/TCGA-ESCA/conch_v1/20x/*.parquet
|
| 151 |
+
- split: TCGA_GBM
|
| 152 |
+
path: data/TCGA-GBM/conch_v1/20x/*.parquet
|
| 153 |
+
- split: TCGA_HNSC
|
| 154 |
+
path: data/TCGA-HNSC/conch_v1/20x/*.parquet
|
| 155 |
+
- split: TCGA_KICH
|
| 156 |
+
path: data/TCGA-KICH/conch_v1/20x/*.parquet
|
| 157 |
+
- split: TCGA_KIRC
|
| 158 |
+
path: data/TCGA-KIRC/conch_v1/20x/*.parquet
|
| 159 |
+
- split: TCGA_KIRP
|
| 160 |
+
path: data/TCGA-KIRP/conch_v1/20x/*.parquet
|
| 161 |
+
- split: TCGA_LGG
|
| 162 |
+
path: data/TCGA-LGG/conch_v1/20x/*.parquet
|
| 163 |
+
- split: TCGA_LIHC
|
| 164 |
+
path: data/TCGA-LIHC/conch_v1/20x/*.parquet
|
| 165 |
+
- split: TCGA_LUAD
|
| 166 |
+
path: data/TCGA-LUAD/conch_v1/20x/*.parquet
|
| 167 |
+
- split: TCGA_LUSC
|
| 168 |
+
path: data/TCGA-LUSC/conch_v1/20x/*.parquet
|
| 169 |
+
- split: TCGA_MESO
|
| 170 |
+
path: data/TCGA-MESO/conch_v1/20x/*.parquet
|
| 171 |
+
- split: TCGA_OV
|
| 172 |
+
path: data/TCGA-OV/conch_v1/20x/*.parquet
|
| 173 |
+
- split: TCGA_PAAD
|
| 174 |
+
path: data/TCGA-PAAD/conch_v1/20x/*.parquet
|
| 175 |
+
- split: TCGA_PCPG
|
| 176 |
+
path: data/TCGA-PCPG/conch_v1/20x/*.parquet
|
| 177 |
+
- split: TCGA_PRAD
|
| 178 |
+
path: data/TCGA-PRAD/conch_v1/20x/*.parquet
|
| 179 |
+
- split: TCGA_READ
|
| 180 |
+
path: data/TCGA-READ/conch_v1/20x/*.parquet
|
| 181 |
+
- split: TCGA_SARC
|
| 182 |
+
path: data/TCGA-SARC/conch_v1/20x/*.parquet
|
| 183 |
+
- split: TCGA_SKCM
|
| 184 |
+
path: data/TCGA-SKCM/conch_v1/20x/*.parquet
|
| 185 |
+
- split: TCGA_STAD
|
| 186 |
+
path: data/TCGA-STAD/conch_v1/20x/*.parquet
|
| 187 |
+
- split: TCGA_TGCT
|
| 188 |
+
path: data/TCGA-TGCT/conch_v1/20x/*.parquet
|
| 189 |
+
- split: TCGA_THCA
|
| 190 |
+
path: data/TCGA-THCA/conch_v1/20x/*.parquet
|
| 191 |
+
- split: TCGA_THYM
|
| 192 |
+
path: data/TCGA-THYM/conch_v1/20x/*.parquet
|
| 193 |
+
- split: TCGA_UCEC
|
| 194 |
+
path: data/TCGA-UCEC/conch_v1/20x/*.parquet
|
| 195 |
+
- split: TCGA_UCS
|
| 196 |
+
path: data/TCGA-UCS/conch_v1/20x/*.parquet
|
| 197 |
+
- split: TCGA_UVM
|
| 198 |
+
path: data/TCGA-UVM/conch_v1/20x/*.parquet
|
| 199 |
+
- config_name: conch_v1_5x
|
| 200 |
+
data_files:
|
| 201 |
+
- split: TCGA_ACC
|
| 202 |
+
path: data/TCGA-ACC/conch_v1/5x/*.parquet
|
| 203 |
+
- split: TCGA_BLCA
|
| 204 |
+
path: data/TCGA-BLCA/conch_v1/5x/*.parquet
|
| 205 |
+
- split: TCGA_BRCA
|
| 206 |
+
path: data/TCGA-BRCA/conch_v1/5x/*.parquet
|
| 207 |
+
- split: TCGA_CESC
|
| 208 |
+
path: data/TCGA-CESC/conch_v1/5x/*.parquet
|
| 209 |
+
- split: TCGA_CHOL
|
| 210 |
+
path: data/TCGA-CHOL/conch_v1/5x/*.parquet
|
| 211 |
+
- split: TCGA_COAD
|
| 212 |
+
path: data/TCGA-COAD/conch_v1/5x/*.parquet
|
| 213 |
+
- split: TCGA_DLBC
|
| 214 |
+
path: data/TCGA-DLBC/conch_v1/5x/*.parquet
|
| 215 |
+
- split: TCGA_ESCA
|
| 216 |
+
path: data/TCGA-ESCA/conch_v1/5x/*.parquet
|
| 217 |
+
- split: TCGA_GBM
|
| 218 |
+
path: data/TCGA-GBM/conch_v1/5x/*.parquet
|
| 219 |
+
- split: TCGA_HNSC
|
| 220 |
+
path: data/TCGA-HNSC/conch_v1/5x/*.parquet
|
| 221 |
+
- split: TCGA_KICH
|
| 222 |
+
path: data/TCGA-KICH/conch_v1/5x/*.parquet
|
| 223 |
+
- split: TCGA_KIRC
|
| 224 |
+
path: data/TCGA-KIRC/conch_v1/5x/*.parquet
|
| 225 |
+
- split: TCGA_KIRP
|
| 226 |
+
path: data/TCGA-KIRP/conch_v1/5x/*.parquet
|
| 227 |
+
- split: TCGA_LGG
|
| 228 |
+
path: data/TCGA-LGG/conch_v1/5x/*.parquet
|
| 229 |
+
- split: TCGA_LIHC
|
| 230 |
+
path: data/TCGA-LIHC/conch_v1/5x/*.parquet
|
| 231 |
+
- split: TCGA_LUAD
|
| 232 |
+
path: data/TCGA-LUAD/conch_v1/5x/*.parquet
|
| 233 |
+
- split: TCGA_LUSC
|
| 234 |
+
path: data/TCGA-LUSC/conch_v1/5x/*.parquet
|
| 235 |
+
- split: TCGA_MESO
|
| 236 |
+
path: data/TCGA-MESO/conch_v1/5x/*.parquet
|
| 237 |
+
- split: TCGA_OV
|
| 238 |
+
path: data/TCGA-OV/conch_v1/5x/*.parquet
|
| 239 |
+
- split: TCGA_PAAD
|
| 240 |
+
path: data/TCGA-PAAD/conch_v1/5x/*.parquet
|
| 241 |
+
- split: TCGA_PCPG
|
| 242 |
+
path: data/TCGA-PCPG/conch_v1/5x/*.parquet
|
| 243 |
+
- split: TCGA_PRAD
|
| 244 |
+
path: data/TCGA-PRAD/conch_v1/5x/*.parquet
|
| 245 |
+
- split: TCGA_READ
|
| 246 |
+
path: data/TCGA-READ/conch_v1/5x/*.parquet
|
| 247 |
+
- split: TCGA_SARC
|
| 248 |
+
path: data/TCGA-SARC/conch_v1/5x/*.parquet
|
| 249 |
+
- split: TCGA_SKCM
|
| 250 |
+
path: data/TCGA-SKCM/conch_v1/5x/*.parquet
|
| 251 |
+
- split: TCGA_STAD
|
| 252 |
+
path: data/TCGA-STAD/conch_v1/5x/*.parquet
|
| 253 |
+
- split: TCGA_TGCT
|
| 254 |
+
path: data/TCGA-TGCT/conch_v1/5x/*.parquet
|
| 255 |
+
- split: TCGA_THCA
|
| 256 |
+
path: data/TCGA-THCA/conch_v1/5x/*.parquet
|
| 257 |
+
- split: TCGA_THYM
|
| 258 |
+
path: data/TCGA-THYM/conch_v1/5x/*.parquet
|
| 259 |
+
- split: TCGA_UCEC
|
| 260 |
+
path: data/TCGA-UCEC/conch_v1/5x/*.parquet
|
| 261 |
+
- split: TCGA_UCS
|
| 262 |
+
path: data/TCGA-UCS/conch_v1/5x/*.parquet
|
| 263 |
+
- split: TCGA_UVM
|
| 264 |
+
path: data/TCGA-UVM/conch_v1/5x/*.parquet
|
| 265 |
+
- config_name: ctranspath_10x
|
| 266 |
+
data_files:
|
| 267 |
+
- split: TCGA_ACC
|
| 268 |
+
path: data/TCGA-ACC/ctranspath/10x/*.parquet
|
| 269 |
+
- split: TCGA_BLCA
|
| 270 |
+
path: data/TCGA-BLCA/ctranspath/10x/*.parquet
|
| 271 |
+
- split: TCGA_BRCA
|
| 272 |
+
path: data/TCGA-BRCA/ctranspath/10x/*.parquet
|
| 273 |
+
- split: TCGA_CESC
|
| 274 |
+
path: data/TCGA-CESC/ctranspath/10x/*.parquet
|
| 275 |
+
- split: TCGA_CHOL
|
| 276 |
+
path: data/TCGA-CHOL/ctranspath/10x/*.parquet
|
| 277 |
+
- split: TCGA_COAD
|
| 278 |
+
path: data/TCGA-COAD/ctranspath/10x/*.parquet
|
| 279 |
+
- split: TCGA_DLBC
|
| 280 |
+
path: data/TCGA-DLBC/ctranspath/10x/*.parquet
|
| 281 |
+
- split: TCGA_ESCA
|
| 282 |
+
path: data/TCGA-ESCA/ctranspath/10x/*.parquet
|
| 283 |
+
- split: TCGA_GBM
|
| 284 |
+
path: data/TCGA-GBM/ctranspath/10x/*.parquet
|
| 285 |
+
- split: TCGA_HNSC
|
| 286 |
+
path: data/TCGA-HNSC/ctranspath/10x/*.parquet
|
| 287 |
+
- split: TCGA_KICH
|
| 288 |
+
path: data/TCGA-KICH/ctranspath/10x/*.parquet
|
| 289 |
+
- split: TCGA_KIRC
|
| 290 |
+
path: data/TCGA-KIRC/ctranspath/10x/*.parquet
|
| 291 |
+
- split: TCGA_KIRP
|
| 292 |
+
path: data/TCGA-KIRP/ctranspath/10x/*.parquet
|
| 293 |
+
- split: TCGA_LGG
|
| 294 |
+
path: data/TCGA-LGG/ctranspath/10x/*.parquet
|
| 295 |
+
- split: TCGA_LIHC
|
| 296 |
+
path: data/TCGA-LIHC/ctranspath/10x/*.parquet
|
| 297 |
+
- split: TCGA_LUAD
|
| 298 |
+
path: data/TCGA-LUAD/ctranspath/10x/*.parquet
|
| 299 |
+
- split: TCGA_LUSC
|
| 300 |
+
path: data/TCGA-LUSC/ctranspath/10x/*.parquet
|
| 301 |
+
- split: TCGA_MESO
|
| 302 |
+
path: data/TCGA-MESO/ctranspath/10x/*.parquet
|
| 303 |
+
- split: TCGA_OV
|
| 304 |
+
path: data/TCGA-OV/ctranspath/10x/*.parquet
|
| 305 |
+
- split: TCGA_PAAD
|
| 306 |
+
path: data/TCGA-PAAD/ctranspath/10x/*.parquet
|
| 307 |
+
- split: TCGA_PCPG
|
| 308 |
+
path: data/TCGA-PCPG/ctranspath/10x/*.parquet
|
| 309 |
+
- split: TCGA_PRAD
|
| 310 |
+
path: data/TCGA-PRAD/ctranspath/10x/*.parquet
|
| 311 |
+
- split: TCGA_READ
|
| 312 |
+
path: data/TCGA-READ/ctranspath/10x/*.parquet
|
| 313 |
+
- split: TCGA_SARC
|
| 314 |
+
path: data/TCGA-SARC/ctranspath/10x/*.parquet
|
| 315 |
+
- split: TCGA_SKCM
|
| 316 |
+
path: data/TCGA-SKCM/ctranspath/10x/*.parquet
|
| 317 |
+
- split: TCGA_STAD
|
| 318 |
+
path: data/TCGA-STAD/ctranspath/10x/*.parquet
|
| 319 |
+
- split: TCGA_TGCT
|
| 320 |
+
path: data/TCGA-TGCT/ctranspath/10x/*.parquet
|
| 321 |
+
- split: TCGA_THCA
|
| 322 |
+
path: data/TCGA-THCA/ctranspath/10x/*.parquet
|
| 323 |
+
- split: TCGA_THYM
|
| 324 |
+
path: data/TCGA-THYM/ctranspath/10x/*.parquet
|
| 325 |
+
- split: TCGA_UCEC
|
| 326 |
+
path: data/TCGA-UCEC/ctranspath/10x/*.parquet
|
| 327 |
+
- split: TCGA_UCS
|
| 328 |
+
path: data/TCGA-UCS/ctranspath/10x/*.parquet
|
| 329 |
+
- split: TCGA_UVM
|
| 330 |
+
path: data/TCGA-UVM/ctranspath/10x/*.parquet
|
| 331 |
+
- config_name: ctranspath_20x
|
| 332 |
+
data_files:
|
| 333 |
+
- split: TCGA_ACC
|
| 334 |
+
path: data/TCGA-ACC/ctranspath/20x/*.parquet
|
| 335 |
+
- split: TCGA_BLCA
|
| 336 |
+
path: data/TCGA-BLCA/ctranspath/20x/*.parquet
|
| 337 |
+
- split: TCGA_BRCA
|
| 338 |
+
path: data/TCGA-BRCA/ctranspath/20x/*.parquet
|
| 339 |
+
- split: TCGA_CESC
|
| 340 |
+
path: data/TCGA-CESC/ctranspath/20x/*.parquet
|
| 341 |
+
- split: TCGA_CHOL
|
| 342 |
+
path: data/TCGA-CHOL/ctranspath/20x/*.parquet
|
| 343 |
+
- split: TCGA_COAD
|
| 344 |
+
path: data/TCGA-COAD/ctranspath/20x/*.parquet
|
| 345 |
+
- split: TCGA_DLBC
|
| 346 |
+
path: data/TCGA-DLBC/ctranspath/20x/*.parquet
|
| 347 |
+
- split: TCGA_ESCA
|
| 348 |
+
path: data/TCGA-ESCA/ctranspath/20x/*.parquet
|
| 349 |
+
- split: TCGA_GBM
|
| 350 |
+
path: data/TCGA-GBM/ctranspath/20x/*.parquet
|
| 351 |
+
- split: TCGA_HNSC
|
| 352 |
+
path: data/TCGA-HNSC/ctranspath/20x/*.parquet
|
| 353 |
+
- split: TCGA_KICH
|
| 354 |
+
path: data/TCGA-KICH/ctranspath/20x/*.parquet
|
| 355 |
+
- split: TCGA_KIRC
|
| 356 |
+
path: data/TCGA-KIRC/ctranspath/20x/*.parquet
|
| 357 |
+
- split: TCGA_KIRP
|
| 358 |
+
path: data/TCGA-KIRP/ctranspath/20x/*.parquet
|
| 359 |
+
- split: TCGA_LGG
|
| 360 |
+
path: data/TCGA-LGG/ctranspath/20x/*.parquet
|
| 361 |
+
- split: TCGA_LIHC
|
| 362 |
+
path: data/TCGA-LIHC/ctranspath/20x/*.parquet
|
| 363 |
+
- split: TCGA_LUAD
|
| 364 |
+
path: data/TCGA-LUAD/ctranspath/20x/*.parquet
|
| 365 |
+
- split: TCGA_LUSC
|
| 366 |
+
path: data/TCGA-LUSC/ctranspath/20x/*.parquet
|
| 367 |
+
- split: TCGA_MESO
|
| 368 |
+
path: data/TCGA-MESO/ctranspath/20x/*.parquet
|
| 369 |
+
- split: TCGA_OV
|
| 370 |
+
path: data/TCGA-OV/ctranspath/20x/*.parquet
|
| 371 |
+
- split: TCGA_PAAD
|
| 372 |
+
path: data/TCGA-PAAD/ctranspath/20x/*.parquet
|
| 373 |
+
- split: TCGA_PCPG
|
| 374 |
+
path: data/TCGA-PCPG/ctranspath/20x/*.parquet
|
| 375 |
+
- split: TCGA_PRAD
|
| 376 |
+
path: data/TCGA-PRAD/ctranspath/20x/*.parquet
|
| 377 |
+
- split: TCGA_READ
|
| 378 |
+
path: data/TCGA-READ/ctranspath/20x/*.parquet
|
| 379 |
+
- split: TCGA_SARC
|
| 380 |
+
path: data/TCGA-SARC/ctranspath/20x/*.parquet
|
| 381 |
+
- split: TCGA_SKCM
|
| 382 |
+
path: data/TCGA-SKCM/ctranspath/20x/*.parquet
|
| 383 |
+
- split: TCGA_STAD
|
| 384 |
+
path: data/TCGA-STAD/ctranspath/20x/*.parquet
|
| 385 |
+
- split: TCGA_TGCT
|
| 386 |
+
path: data/TCGA-TGCT/ctranspath/20x/*.parquet
|
| 387 |
+
- split: TCGA_THCA
|
| 388 |
+
path: data/TCGA-THCA/ctranspath/20x/*.parquet
|
| 389 |
+
- split: TCGA_THYM
|
| 390 |
+
path: data/TCGA-THYM/ctranspath/20x/*.parquet
|
| 391 |
+
- split: TCGA_UCEC
|
| 392 |
+
path: data/TCGA-UCEC/ctranspath/20x/*.parquet
|
| 393 |
+
- split: TCGA_UCS
|
| 394 |
+
path: data/TCGA-UCS/ctranspath/20x/*.parquet
|
| 395 |
+
- split: TCGA_UVM
|
| 396 |
+
path: data/TCGA-UVM/ctranspath/20x/*.parquet
|
| 397 |
+
- config_name: ctranspath_5x
|
| 398 |
+
data_files:
|
| 399 |
+
- split: TCGA_ACC
|
| 400 |
+
path: data/TCGA-ACC/ctranspath/5x/*.parquet
|
| 401 |
+
- split: TCGA_BLCA
|
| 402 |
+
path: data/TCGA-BLCA/ctranspath/5x/*.parquet
|
| 403 |
+
- split: TCGA_BRCA
|
| 404 |
+
path: data/TCGA-BRCA/ctranspath/5x/*.parquet
|
| 405 |
+
- split: TCGA_CESC
|
| 406 |
+
path: data/TCGA-CESC/ctranspath/5x/*.parquet
|
| 407 |
+
- split: TCGA_CHOL
|
| 408 |
+
path: data/TCGA-CHOL/ctranspath/5x/*.parquet
|
| 409 |
+
- split: TCGA_COAD
|
| 410 |
+
path: data/TCGA-COAD/ctranspath/5x/*.parquet
|
| 411 |
+
- split: TCGA_DLBC
|
| 412 |
+
path: data/TCGA-DLBC/ctranspath/5x/*.parquet
|
| 413 |
+
- split: TCGA_ESCA
|
| 414 |
+
path: data/TCGA-ESCA/ctranspath/5x/*.parquet
|
| 415 |
+
- split: TCGA_GBM
|
| 416 |
+
path: data/TCGA-GBM/ctranspath/5x/*.parquet
|
| 417 |
+
- split: TCGA_HNSC
|
| 418 |
+
path: data/TCGA-HNSC/ctranspath/5x/*.parquet
|
| 419 |
+
- split: TCGA_KICH
|
| 420 |
+
path: data/TCGA-KICH/ctranspath/5x/*.parquet
|
| 421 |
+
- split: TCGA_KIRC
|
| 422 |
+
path: data/TCGA-KIRC/ctranspath/5x/*.parquet
|
| 423 |
+
- split: TCGA_KIRP
|
| 424 |
+
path: data/TCGA-KIRP/ctranspath/5x/*.parquet
|
| 425 |
+
- split: TCGA_LGG
|
| 426 |
+
path: data/TCGA-LGG/ctranspath/5x/*.parquet
|
| 427 |
+
- split: TCGA_LIHC
|
| 428 |
+
path: data/TCGA-LIHC/ctranspath/5x/*.parquet
|
| 429 |
+
- split: TCGA_LUAD
|
| 430 |
+
path: data/TCGA-LUAD/ctranspath/5x/*.parquet
|
| 431 |
+
- split: TCGA_LUSC
|
| 432 |
+
path: data/TCGA-LUSC/ctranspath/5x/*.parquet
|
| 433 |
+
- split: TCGA_MESO
|
| 434 |
+
path: data/TCGA-MESO/ctranspath/5x/*.parquet
|
| 435 |
+
- split: TCGA_OV
|
| 436 |
+
path: data/TCGA-OV/ctranspath/5x/*.parquet
|
| 437 |
+
- split: TCGA_PAAD
|
| 438 |
+
path: data/TCGA-PAAD/ctranspath/5x/*.parquet
|
| 439 |
+
- split: TCGA_PCPG
|
| 440 |
+
path: data/TCGA-PCPG/ctranspath/5x/*.parquet
|
| 441 |
+
- split: TCGA_PRAD
|
| 442 |
+
path: data/TCGA-PRAD/ctranspath/5x/*.parquet
|
| 443 |
+
- split: TCGA_READ
|
| 444 |
+
path: data/TCGA-READ/ctranspath/5x/*.parquet
|
| 445 |
+
- split: TCGA_SARC
|
| 446 |
+
path: data/TCGA-SARC/ctranspath/5x/*.parquet
|
| 447 |
+
- split: TCGA_SKCM
|
| 448 |
+
path: data/TCGA-SKCM/ctranspath/5x/*.parquet
|
| 449 |
+
- split: TCGA_STAD
|
| 450 |
+
path: data/TCGA-STAD/ctranspath/5x/*.parquet
|
| 451 |
+
- split: TCGA_TGCT
|
| 452 |
+
path: data/TCGA-TGCT/ctranspath/5x/*.parquet
|
| 453 |
+
- split: TCGA_THCA
|
| 454 |
+
path: data/TCGA-THCA/ctranspath/5x/*.parquet
|
| 455 |
+
- split: TCGA_THYM
|
| 456 |
+
path: data/TCGA-THYM/ctranspath/5x/*.parquet
|
| 457 |
+
- split: TCGA_UCEC
|
| 458 |
+
path: data/TCGA-UCEC/ctranspath/5x/*.parquet
|
| 459 |
+
- split: TCGA_UCS
|
| 460 |
+
path: data/TCGA-UCS/ctranspath/5x/*.parquet
|
| 461 |
+
- split: TCGA_UVM
|
| 462 |
+
path: data/TCGA-UVM/ctranspath/5x/*.parquet
|
| 463 |
+
- config_name: gigapath_slide_20x
|
| 464 |
+
data_files:
|
| 465 |
+
- split: TCGA_ACC
|
| 466 |
+
path: data/TCGA-ACC/gigapath_slide/20x/*.parquet
|
| 467 |
+
- split: TCGA_BLCA
|
| 468 |
+
path: data/TCGA-BLCA/gigapath_slide/20x/*.parquet
|
| 469 |
+
- split: TCGA_BRCA
|
| 470 |
+
path: data/TCGA-BRCA/gigapath_slide/20x/*.parquet
|
| 471 |
+
- split: TCGA_CESC
|
| 472 |
+
path: data/TCGA-CESC/gigapath_slide/20x/*.parquet
|
| 473 |
+
- split: TCGA_CHOL
|
| 474 |
+
path: data/TCGA-CHOL/gigapath_slide/20x/*.parquet
|
| 475 |
+
- split: TCGA_COAD
|
| 476 |
+
path: data/TCGA-COAD/gigapath_slide/20x/*.parquet
|
| 477 |
+
- split: TCGA_DLBC
|
| 478 |
+
path: data/TCGA-DLBC/gigapath_slide/20x/*.parquet
|
| 479 |
+
- split: TCGA_ESCA
|
| 480 |
+
path: data/TCGA-ESCA/gigapath_slide/20x/*.parquet
|
| 481 |
+
- split: TCGA_GBM
|
| 482 |
+
path: data/TCGA-GBM/gigapath_slide/20x/*.parquet
|
| 483 |
+
- split: TCGA_HNSC
|
| 484 |
+
path: data/TCGA-HNSC/gigapath_slide/20x/*.parquet
|
| 485 |
+
- split: TCGA_KICH
|
| 486 |
+
path: data/TCGA-KICH/gigapath_slide/20x/*.parquet
|
| 487 |
+
- split: TCGA_KIRC
|
| 488 |
+
path: data/TCGA-KIRC/gigapath_slide/20x/*.parquet
|
| 489 |
+
- split: TCGA_KIRP
|
| 490 |
+
path: data/TCGA-KIRP/gigapath_slide/20x/*.parquet
|
| 491 |
+
- split: TCGA_LGG
|
| 492 |
+
path: data/TCGA-LGG/gigapath_slide/20x/*.parquet
|
| 493 |
+
- split: TCGA_LIHC
|
| 494 |
+
path: data/TCGA-LIHC/gigapath_slide/20x/*.parquet
|
| 495 |
+
- split: TCGA_LUAD
|
| 496 |
+
path: data/TCGA-LUAD/gigapath_slide/20x/*.parquet
|
| 497 |
+
- split: TCGA_LUSC
|
| 498 |
+
path: data/TCGA-LUSC/gigapath_slide/20x/*.parquet
|
| 499 |
+
- split: TCGA_MESO
|
| 500 |
+
path: data/TCGA-MESO/gigapath_slide/20x/*.parquet
|
| 501 |
+
- split: TCGA_OV
|
| 502 |
+
path: data/TCGA-OV/gigapath_slide/20x/*.parquet
|
| 503 |
+
- split: TCGA_PAAD
|
| 504 |
+
path: data/TCGA-PAAD/gigapath_slide/20x/*.parquet
|
| 505 |
+
- split: TCGA_PCPG
|
| 506 |
+
path: data/TCGA-PCPG/gigapath_slide/20x/*.parquet
|
| 507 |
+
- split: TCGA_PRAD
|
| 508 |
+
path: data/TCGA-PRAD/gigapath_slide/20x/*.parquet
|
| 509 |
+
- split: TCGA_READ
|
| 510 |
+
path: data/TCGA-READ/gigapath_slide/20x/*.parquet
|
| 511 |
+
- split: TCGA_SARC
|
| 512 |
+
path: data/TCGA-SARC/gigapath_slide/20x/*.parquet
|
| 513 |
+
- split: TCGA_SKCM
|
| 514 |
+
path: data/TCGA-SKCM/gigapath_slide/20x/*.parquet
|
| 515 |
+
- split: TCGA_STAD
|
| 516 |
+
path: data/TCGA-STAD/gigapath_slide/20x/*.parquet
|
| 517 |
+
- split: TCGA_TGCT
|
| 518 |
+
path: data/TCGA-TGCT/gigapath_slide/20x/*.parquet
|
| 519 |
+
- split: TCGA_THCA
|
| 520 |
+
path: data/TCGA-THCA/gigapath_slide/20x/*.parquet
|
| 521 |
+
- split: TCGA_THYM
|
| 522 |
+
path: data/TCGA-THYM/gigapath_slide/20x/*.parquet
|
| 523 |
+
- split: TCGA_UCEC
|
| 524 |
+
path: data/TCGA-UCEC/gigapath_slide/20x/*.parquet
|
| 525 |
+
- split: TCGA_UCS
|
| 526 |
+
path: data/TCGA-UCS/gigapath_slide/20x/*.parquet
|
| 527 |
+
- split: TCGA_UVM
|
| 528 |
+
path: data/TCGA-UVM/gigapath_slide/20x/*.parquet
|
| 529 |
+
- config_name: titan_20x
|
| 530 |
+
data_files:
|
| 531 |
+
- split: TCGA_ACC
|
| 532 |
+
path: data/TCGA-ACC/titan/20x/*.parquet
|
| 533 |
+
- split: TCGA_BLCA
|
| 534 |
+
path: data/TCGA-BLCA/titan/20x/*.parquet
|
| 535 |
+
- split: TCGA_BRCA
|
| 536 |
+
path: data/TCGA-BRCA/titan/20x/*.parquet
|
| 537 |
+
- split: TCGA_CESC
|
| 538 |
+
path: data/TCGA-CESC/titan/20x/*.parquet
|
| 539 |
+
- split: TCGA_CHOL
|
| 540 |
+
path: data/TCGA-CHOL/titan/20x/*.parquet
|
| 541 |
+
- split: TCGA_COAD
|
| 542 |
+
path: data/TCGA-COAD/titan/20x/*.parquet
|
| 543 |
+
- split: TCGA_DLBC
|
| 544 |
+
path: data/TCGA-DLBC/titan/20x/*.parquet
|
| 545 |
+
- split: TCGA_ESCA
|
| 546 |
+
path: data/TCGA-ESCA/titan/20x/*.parquet
|
| 547 |
+
- split: TCGA_GBM
|
| 548 |
+
path: data/TCGA-GBM/titan/20x/*.parquet
|
| 549 |
+
- split: TCGA_HNSC
|
| 550 |
+
path: data/TCGA-HNSC/titan/20x/*.parquet
|
| 551 |
+
- split: TCGA_KICH
|
| 552 |
+
path: data/TCGA-KICH/titan/20x/*.parquet
|
| 553 |
+
- split: TCGA_KIRC
|
| 554 |
+
path: data/TCGA-KIRC/titan/20x/*.parquet
|
| 555 |
+
- split: TCGA_KIRP
|
| 556 |
+
path: data/TCGA-KIRP/titan/20x/*.parquet
|
| 557 |
+
- split: TCGA_LGG
|
| 558 |
+
path: data/TCGA-LGG/titan/20x/*.parquet
|
| 559 |
+
- split: TCGA_LIHC
|
| 560 |
+
path: data/TCGA-LIHC/titan/20x/*.parquet
|
| 561 |
+
- split: TCGA_LUAD
|
| 562 |
+
path: data/TCGA-LUAD/titan/20x/*.parquet
|
| 563 |
+
- split: TCGA_LUSC
|
| 564 |
+
path: data/TCGA-LUSC/titan/20x/*.parquet
|
| 565 |
+
- split: TCGA_MESO
|
| 566 |
+
path: data/TCGA-MESO/titan/20x/*.parquet
|
| 567 |
+
- split: TCGA_OV
|
| 568 |
+
path: data/TCGA-OV/titan/20x/*.parquet
|
| 569 |
+
- split: TCGA_PAAD
|
| 570 |
+
path: data/TCGA-PAAD/titan/20x/*.parquet
|
| 571 |
+
- split: TCGA_PCPG
|
| 572 |
+
path: data/TCGA-PCPG/titan/20x/*.parquet
|
| 573 |
+
- split: TCGA_PRAD
|
| 574 |
+
path: data/TCGA-PRAD/titan/20x/*.parquet
|
| 575 |
+
- split: TCGA_READ
|
| 576 |
+
path: data/TCGA-READ/titan/20x/*.parquet
|
| 577 |
+
- split: TCGA_SARC
|
| 578 |
+
path: data/TCGA-SARC/titan/20x/*.parquet
|
| 579 |
+
- split: TCGA_SKCM
|
| 580 |
+
path: data/TCGA-SKCM/titan/20x/*.parquet
|
| 581 |
+
- split: TCGA_STAD
|
| 582 |
+
path: data/TCGA-STAD/titan/20x/*.parquet
|
| 583 |
+
- split: TCGA_TGCT
|
| 584 |
+
path: data/TCGA-TGCT/titan/20x/*.parquet
|
| 585 |
+
- split: TCGA_THCA
|
| 586 |
+
path: data/TCGA-THCA/titan/20x/*.parquet
|
| 587 |
+
- split: TCGA_THYM
|
| 588 |
+
path: data/TCGA-THYM/titan/20x/*.parquet
|
| 589 |
+
- split: TCGA_UCEC
|
| 590 |
+
path: data/TCGA-UCEC/titan/20x/*.parquet
|
| 591 |
+
- split: TCGA_UCS
|
| 592 |
+
path: data/TCGA-UCS/titan/20x/*.parquet
|
| 593 |
+
- split: TCGA_UVM
|
| 594 |
+
path: data/TCGA-UVM/titan/20x/*.parquet
|
| 595 |
+
- config_name: uni_v1_10x
|
| 596 |
+
data_files:
|
| 597 |
+
- split: TCGA_ACC
|
| 598 |
+
path: data/TCGA-ACC/uni_v1/10x/*.parquet
|
| 599 |
+
- split: TCGA_BLCA
|
| 600 |
+
path: data/TCGA-BLCA/uni_v1/10x/*.parquet
|
| 601 |
+
- split: TCGA_BRCA
|
| 602 |
+
path: data/TCGA-BRCA/uni_v1/10x/*.parquet
|
| 603 |
+
- split: TCGA_CESC
|
| 604 |
+
path: data/TCGA-CESC/uni_v1/10x/*.parquet
|
| 605 |
+
- split: TCGA_CHOL
|
| 606 |
+
path: data/TCGA-CHOL/uni_v1/10x/*.parquet
|
| 607 |
+
- split: TCGA_COAD
|
| 608 |
+
path: data/TCGA-COAD/uni_v1/10x/*.parquet
|
| 609 |
+
- split: TCGA_DLBC
|
| 610 |
+
path: data/TCGA-DLBC/uni_v1/10x/*.parquet
|
| 611 |
+
- split: TCGA_ESCA
|
| 612 |
+
path: data/TCGA-ESCA/uni_v1/10x/*.parquet
|
| 613 |
+
- split: TCGA_GBM
|
| 614 |
+
path: data/TCGA-GBM/uni_v1/10x/*.parquet
|
| 615 |
+
- split: TCGA_HNSC
|
| 616 |
+
path: data/TCGA-HNSC/uni_v1/10x/*.parquet
|
| 617 |
+
- split: TCGA_KICH
|
| 618 |
+
path: data/TCGA-KICH/uni_v1/10x/*.parquet
|
| 619 |
+
- split: TCGA_KIRC
|
| 620 |
+
path: data/TCGA-KIRC/uni_v1/10x/*.parquet
|
| 621 |
+
- split: TCGA_KIRP
|
| 622 |
+
path: data/TCGA-KIRP/uni_v1/10x/*.parquet
|
| 623 |
+
- split: TCGA_LGG
|
| 624 |
+
path: data/TCGA-LGG/uni_v1/10x/*.parquet
|
| 625 |
+
- split: TCGA_LIHC
|
| 626 |
+
path: data/TCGA-LIHC/uni_v1/10x/*.parquet
|
| 627 |
+
- split: TCGA_LUAD
|
| 628 |
+
path: data/TCGA-LUAD/uni_v1/10x/*.parquet
|
| 629 |
+
- split: TCGA_LUSC
|
| 630 |
+
path: data/TCGA-LUSC/uni_v1/10x/*.parquet
|
| 631 |
+
- split: TCGA_MESO
|
| 632 |
+
path: data/TCGA-MESO/uni_v1/10x/*.parquet
|
| 633 |
+
- split: TCGA_OV
|
| 634 |
+
path: data/TCGA-OV/uni_v1/10x/*.parquet
|
| 635 |
+
- split: TCGA_PAAD
|
| 636 |
+
path: data/TCGA-PAAD/uni_v1/10x/*.parquet
|
| 637 |
+
- split: TCGA_PCPG
|
| 638 |
+
path: data/TCGA-PCPG/uni_v1/10x/*.parquet
|
| 639 |
+
- split: TCGA_PRAD
|
| 640 |
+
path: data/TCGA-PRAD/uni_v1/10x/*.parquet
|
| 641 |
+
- split: TCGA_READ
|
| 642 |
+
path: data/TCGA-READ/uni_v1/10x/*.parquet
|
| 643 |
+
- split: TCGA_SARC
|
| 644 |
+
path: data/TCGA-SARC/uni_v1/10x/*.parquet
|
| 645 |
+
- split: TCGA_SKCM
|
| 646 |
+
path: data/TCGA-SKCM/uni_v1/10x/*.parquet
|
| 647 |
+
- split: TCGA_STAD
|
| 648 |
+
path: data/TCGA-STAD/uni_v1/10x/*.parquet
|
| 649 |
+
- split: TCGA_TGCT
|
| 650 |
+
path: data/TCGA-TGCT/uni_v1/10x/*.parquet
|
| 651 |
+
- split: TCGA_THCA
|
| 652 |
+
path: data/TCGA-THCA/uni_v1/10x/*.parquet
|
| 653 |
+
- split: TCGA_THYM
|
| 654 |
+
path: data/TCGA-THYM/uni_v1/10x/*.parquet
|
| 655 |
+
- split: TCGA_UCEC
|
| 656 |
+
path: data/TCGA-UCEC/uni_v1/10x/*.parquet
|
| 657 |
+
- split: TCGA_UCS
|
| 658 |
+
path: data/TCGA-UCS/uni_v1/10x/*.parquet
|
| 659 |
+
- split: TCGA_UVM
|
| 660 |
+
path: data/TCGA-UVM/uni_v1/10x/*.parquet
|
| 661 |
+
- config_name: uni_v1_20x
|
| 662 |
+
data_files:
|
| 663 |
+
- split: TCGA_ACC
|
| 664 |
+
path: data/TCGA-ACC/uni_v1/20x/*.parquet
|
| 665 |
+
- split: TCGA_BLCA
|
| 666 |
+
path: data/TCGA-BLCA/uni_v1/20x/*.parquet
|
| 667 |
+
- split: TCGA_BRCA
|
| 668 |
+
path: data/TCGA-BRCA/uni_v1/20x/*.parquet
|
| 669 |
+
- split: TCGA_CESC
|
| 670 |
+
path: data/TCGA-CESC/uni_v1/20x/*.parquet
|
| 671 |
+
- split: TCGA_CHOL
|
| 672 |
+
path: data/TCGA-CHOL/uni_v1/20x/*.parquet
|
| 673 |
+
- split: TCGA_COAD
|
| 674 |
+
path: data/TCGA-COAD/uni_v1/20x/*.parquet
|
| 675 |
+
- split: TCGA_DLBC
|
| 676 |
+
path: data/TCGA-DLBC/uni_v1/20x/*.parquet
|
| 677 |
+
- split: TCGA_ESCA
|
| 678 |
+
path: data/TCGA-ESCA/uni_v1/20x/*.parquet
|
| 679 |
+
- split: TCGA_GBM
|
| 680 |
+
path: data/TCGA-GBM/uni_v1/20x/*.parquet
|
| 681 |
+
- split: TCGA_HNSC
|
| 682 |
+
path: data/TCGA-HNSC/uni_v1/20x/*.parquet
|
| 683 |
+
- split: TCGA_KICH
|
| 684 |
+
path: data/TCGA-KICH/uni_v1/20x/*.parquet
|
| 685 |
+
- split: TCGA_KIRC
|
| 686 |
+
path: data/TCGA-KIRC/uni_v1/20x/*.parquet
|
| 687 |
+
- split: TCGA_KIRP
|
| 688 |
+
path: data/TCGA-KIRP/uni_v1/20x/*.parquet
|
| 689 |
+
- split: TCGA_LGG
|
| 690 |
+
path: data/TCGA-LGG/uni_v1/20x/*.parquet
|
| 691 |
+
- split: TCGA_LIHC
|
| 692 |
+
path: data/TCGA-LIHC/uni_v1/20x/*.parquet
|
| 693 |
+
- split: TCGA_LUAD
|
| 694 |
+
path: data/TCGA-LUAD/uni_v1/20x/*.parquet
|
| 695 |
+
- split: TCGA_LUSC
|
| 696 |
+
path: data/TCGA-LUSC/uni_v1/20x/*.parquet
|
| 697 |
+
- split: TCGA_MESO
|
| 698 |
+
path: data/TCGA-MESO/uni_v1/20x/*.parquet
|
| 699 |
+
- split: TCGA_OV
|
| 700 |
+
path: data/TCGA-OV/uni_v1/20x/*.parquet
|
| 701 |
+
- split: TCGA_PAAD
|
| 702 |
+
path: data/TCGA-PAAD/uni_v1/20x/*.parquet
|
| 703 |
+
- split: TCGA_PCPG
|
| 704 |
+
path: data/TCGA-PCPG/uni_v1/20x/*.parquet
|
| 705 |
+
- split: TCGA_PRAD
|
| 706 |
+
path: data/TCGA-PRAD/uni_v1/20x/*.parquet
|
| 707 |
+
- split: TCGA_READ
|
| 708 |
+
path: data/TCGA-READ/uni_v1/20x/*.parquet
|
| 709 |
+
- split: TCGA_SARC
|
| 710 |
+
path: data/TCGA-SARC/uni_v1/20x/*.parquet
|
| 711 |
+
- split: TCGA_SKCM
|
| 712 |
+
path: data/TCGA-SKCM/uni_v1/20x/*.parquet
|
| 713 |
+
- split: TCGA_STAD
|
| 714 |
+
path: data/TCGA-STAD/uni_v1/20x/*.parquet
|
| 715 |
+
- split: TCGA_TGCT
|
| 716 |
+
path: data/TCGA-TGCT/uni_v1/20x/*.parquet
|
| 717 |
+
- split: TCGA_THCA
|
| 718 |
+
path: data/TCGA-THCA/uni_v1/20x/*.parquet
|
| 719 |
+
- split: TCGA_THYM
|
| 720 |
+
path: data/TCGA-THYM/uni_v1/20x/*.parquet
|
| 721 |
+
- split: TCGA_UCEC
|
| 722 |
+
path: data/TCGA-UCEC/uni_v1/20x/*.parquet
|
| 723 |
+
- split: TCGA_UCS
|
| 724 |
+
path: data/TCGA-UCS/uni_v1/20x/*.parquet
|
| 725 |
+
- split: TCGA_UVM
|
| 726 |
+
path: data/TCGA-UVM/uni_v1/20x/*.parquet
|
| 727 |
+
- config_name: uni_v1_5x
|
| 728 |
+
data_files:
|
| 729 |
+
- split: TCGA_ACC
|
| 730 |
+
path: data/TCGA-ACC/uni_v1/5x/*.parquet
|
| 731 |
+
- split: TCGA_BLCA
|
| 732 |
+
path: data/TCGA-BLCA/uni_v1/5x/*.parquet
|
| 733 |
+
- split: TCGA_BRCA
|
| 734 |
+
path: data/TCGA-BRCA/uni_v1/5x/*.parquet
|
| 735 |
+
- split: TCGA_CESC
|
| 736 |
+
path: data/TCGA-CESC/uni_v1/5x/*.parquet
|
| 737 |
+
- split: TCGA_CHOL
|
| 738 |
+
path: data/TCGA-CHOL/uni_v1/5x/*.parquet
|
| 739 |
+
- split: TCGA_COAD
|
| 740 |
+
path: data/TCGA-COAD/uni_v1/5x/*.parquet
|
| 741 |
+
- split: TCGA_DLBC
|
| 742 |
+
path: data/TCGA-DLBC/uni_v1/5x/*.parquet
|
| 743 |
+
- split: TCGA_ESCA
|
| 744 |
+
path: data/TCGA-ESCA/uni_v1/5x/*.parquet
|
| 745 |
+
- split: TCGA_GBM
|
| 746 |
+
path: data/TCGA-GBM/uni_v1/5x/*.parquet
|
| 747 |
+
- split: TCGA_HNSC
|
| 748 |
+
path: data/TCGA-HNSC/uni_v1/5x/*.parquet
|
| 749 |
+
- split: TCGA_KICH
|
| 750 |
+
path: data/TCGA-KICH/uni_v1/5x/*.parquet
|
| 751 |
+
- split: TCGA_KIRC
|
| 752 |
+
path: data/TCGA-KIRC/uni_v1/5x/*.parquet
|
| 753 |
+
- split: TCGA_KIRP
|
| 754 |
+
path: data/TCGA-KIRP/uni_v1/5x/*.parquet
|
| 755 |
+
- split: TCGA_LGG
|
| 756 |
+
path: data/TCGA-LGG/uni_v1/5x/*.parquet
|
| 757 |
+
- split: TCGA_LIHC
|
| 758 |
+
path: data/TCGA-LIHC/uni_v1/5x/*.parquet
|
| 759 |
+
- split: TCGA_LUAD
|
| 760 |
+
path: data/TCGA-LUAD/uni_v1/5x/*.parquet
|
| 761 |
+
- split: TCGA_LUSC
|
| 762 |
+
path: data/TCGA-LUSC/uni_v1/5x/*.parquet
|
| 763 |
+
- split: TCGA_MESO
|
| 764 |
+
path: data/TCGA-MESO/uni_v1/5x/*.parquet
|
| 765 |
+
- split: TCGA_OV
|
| 766 |
+
path: data/TCGA-OV/uni_v1/5x/*.parquet
|
| 767 |
+
- split: TCGA_PAAD
|
| 768 |
+
path: data/TCGA-PAAD/uni_v1/5x/*.parquet
|
| 769 |
+
- split: TCGA_PCPG
|
| 770 |
+
path: data/TCGA-PCPG/uni_v1/5x/*.parquet
|
| 771 |
+
- split: TCGA_PRAD
|
| 772 |
+
path: data/TCGA-PRAD/uni_v1/5x/*.parquet
|
| 773 |
+
- split: TCGA_READ
|
| 774 |
+
path: data/TCGA-READ/uni_v1/5x/*.parquet
|
| 775 |
+
- split: TCGA_SARC
|
| 776 |
+
path: data/TCGA-SARC/uni_v1/5x/*.parquet
|
| 777 |
+
- split: TCGA_SKCM
|
| 778 |
+
path: data/TCGA-SKCM/uni_v1/5x/*.parquet
|
| 779 |
+
- split: TCGA_STAD
|
| 780 |
+
path: data/TCGA-STAD/uni_v1/5x/*.parquet
|
| 781 |
+
- split: TCGA_TGCT
|
| 782 |
+
path: data/TCGA-TGCT/uni_v1/5x/*.parquet
|
| 783 |
+
- split: TCGA_THCA
|
| 784 |
+
path: data/TCGA-THCA/uni_v1/5x/*.parquet
|
| 785 |
+
- split: TCGA_THYM
|
| 786 |
+
path: data/TCGA-THYM/uni_v1/5x/*.parquet
|
| 787 |
+
- split: TCGA_UCEC
|
| 788 |
+
path: data/TCGA-UCEC/uni_v1/5x/*.parquet
|
| 789 |
+
- split: TCGA_UCS
|
| 790 |
+
path: data/TCGA-UCS/uni_v1/5x/*.parquet
|
| 791 |
+
- split: TCGA_UVM
|
| 792 |
+
path: data/TCGA-UVM/uni_v1/5x/*.parquet
|
| 793 |
+
- config_name: uni_v2_10x
|
| 794 |
+
data_files:
|
| 795 |
+
- split: TCGA_ACC
|
| 796 |
+
path: data/TCGA-ACC/uni_v2/10x/*.parquet
|
| 797 |
+
- split: TCGA_BLCA
|
| 798 |
+
path: data/TCGA-BLCA/uni_v2/10x/*.parquet
|
| 799 |
+
- split: TCGA_BRCA
|
| 800 |
+
path: data/TCGA-BRCA/uni_v2/10x/*.parquet
|
| 801 |
+
- split: TCGA_CESC
|
| 802 |
+
path: data/TCGA-CESC/uni_v2/10x/*.parquet
|
| 803 |
+
- split: TCGA_CHOL
|
| 804 |
+
path: data/TCGA-CHOL/uni_v2/10x/*.parquet
|
| 805 |
+
- split: TCGA_COAD
|
| 806 |
+
path: data/TCGA-COAD/uni_v2/10x/*.parquet
|
| 807 |
+
- split: TCGA_DLBC
|
| 808 |
+
path: data/TCGA-DLBC/uni_v2/10x/*.parquet
|
| 809 |
+
- split: TCGA_ESCA
|
| 810 |
+
path: data/TCGA-ESCA/uni_v2/10x/*.parquet
|
| 811 |
+
- split: TCGA_GBM
|
| 812 |
+
path: data/TCGA-GBM/uni_v2/10x/*.parquet
|
| 813 |
+
- split: TCGA_HNSC
|
| 814 |
+
path: data/TCGA-HNSC/uni_v2/10x/*.parquet
|
| 815 |
+
- split: TCGA_KICH
|
| 816 |
+
path: data/TCGA-KICH/uni_v2/10x/*.parquet
|
| 817 |
+
- split: TCGA_KIRC
|
| 818 |
+
path: data/TCGA-KIRC/uni_v2/10x/*.parquet
|
| 819 |
+
- split: TCGA_KIRP
|
| 820 |
+
path: data/TCGA-KIRP/uni_v2/10x/*.parquet
|
| 821 |
+
- split: TCGA_LGG
|
| 822 |
+
path: data/TCGA-LGG/uni_v2/10x/*.parquet
|
| 823 |
+
- split: TCGA_LIHC
|
| 824 |
+
path: data/TCGA-LIHC/uni_v2/10x/*.parquet
|
| 825 |
+
- split: TCGA_LUAD
|
| 826 |
+
path: data/TCGA-LUAD/uni_v2/10x/*.parquet
|
| 827 |
+
- split: TCGA_LUSC
|
| 828 |
+
path: data/TCGA-LUSC/uni_v2/10x/*.parquet
|
| 829 |
+
- split: TCGA_MESO
|
| 830 |
+
path: data/TCGA-MESO/uni_v2/10x/*.parquet
|
| 831 |
+
- split: TCGA_OV
|
| 832 |
+
path: data/TCGA-OV/uni_v2/10x/*.parquet
|
| 833 |
+
- split: TCGA_PAAD
|
| 834 |
+
path: data/TCGA-PAAD/uni_v2/10x/*.parquet
|
| 835 |
+
- split: TCGA_PCPG
|
| 836 |
+
path: data/TCGA-PCPG/uni_v2/10x/*.parquet
|
| 837 |
+
- split: TCGA_PRAD
|
| 838 |
+
path: data/TCGA-PRAD/uni_v2/10x/*.parquet
|
| 839 |
+
- split: TCGA_READ
|
| 840 |
+
path: data/TCGA-READ/uni_v2/10x/*.parquet
|
| 841 |
+
- split: TCGA_SARC
|
| 842 |
+
path: data/TCGA-SARC/uni_v2/10x/*.parquet
|
| 843 |
+
- split: TCGA_SKCM
|
| 844 |
+
path: data/TCGA-SKCM/uni_v2/10x/*.parquet
|
| 845 |
+
- split: TCGA_STAD
|
| 846 |
+
path: data/TCGA-STAD/uni_v2/10x/*.parquet
|
| 847 |
+
- split: TCGA_TGCT
|
| 848 |
+
path: data/TCGA-TGCT/uni_v2/10x/*.parquet
|
| 849 |
+
- split: TCGA_THCA
|
| 850 |
+
path: data/TCGA-THCA/uni_v2/10x/*.parquet
|
| 851 |
+
- split: TCGA_THYM
|
| 852 |
+
path: data/TCGA-THYM/uni_v2/10x/*.parquet
|
| 853 |
+
- split: TCGA_UCEC
|
| 854 |
+
path: data/TCGA-UCEC/uni_v2/10x/*.parquet
|
| 855 |
+
- split: TCGA_UCS
|
| 856 |
+
path: data/TCGA-UCS/uni_v2/10x/*.parquet
|
| 857 |
+
- split: TCGA_UVM
|
| 858 |
+
path: data/TCGA-UVM/uni_v2/10x/*.parquet
|
| 859 |
+
- config_name: uni_v2_20x
|
| 860 |
+
data_files:
|
| 861 |
+
- split: TCGA_ACC
|
| 862 |
+
path: data/TCGA-ACC/uni_v2/20x/*.parquet
|
| 863 |
+
- split: TCGA_BLCA
|
| 864 |
+
path: data/TCGA-BLCA/uni_v2/20x/*.parquet
|
| 865 |
+
- split: TCGA_BRCA
|
| 866 |
+
path: data/TCGA-BRCA/uni_v2/20x/*.parquet
|
| 867 |
+
- split: TCGA_CESC
|
| 868 |
+
path: data/TCGA-CESC/uni_v2/20x/*.parquet
|
| 869 |
+
- split: TCGA_CHOL
|
| 870 |
+
path: data/TCGA-CHOL/uni_v2/20x/*.parquet
|
| 871 |
+
- split: TCGA_COAD
|
| 872 |
+
path: data/TCGA-COAD/uni_v2/20x/*.parquet
|
| 873 |
+
- split: TCGA_DLBC
|
| 874 |
+
path: data/TCGA-DLBC/uni_v2/20x/*.parquet
|
| 875 |
+
- split: TCGA_ESCA
|
| 876 |
+
path: data/TCGA-ESCA/uni_v2/20x/*.parquet
|
| 877 |
+
- split: TCGA_GBM
|
| 878 |
+
path: data/TCGA-GBM/uni_v2/20x/*.parquet
|
| 879 |
+
- split: TCGA_HNSC
|
| 880 |
+
path: data/TCGA-HNSC/uni_v2/20x/*.parquet
|
| 881 |
+
- split: TCGA_KICH
|
| 882 |
+
path: data/TCGA-KICH/uni_v2/20x/*.parquet
|
| 883 |
+
- split: TCGA_KIRC
|
| 884 |
+
path: data/TCGA-KIRC/uni_v2/20x/*.parquet
|
| 885 |
+
- split: TCGA_KIRP
|
| 886 |
+
path: data/TCGA-KIRP/uni_v2/20x/*.parquet
|
| 887 |
+
- split: TCGA_LGG
|
| 888 |
+
path: data/TCGA-LGG/uni_v2/20x/*.parquet
|
| 889 |
+
- split: TCGA_LIHC
|
| 890 |
+
path: data/TCGA-LIHC/uni_v2/20x/*.parquet
|
| 891 |
+
- split: TCGA_LUAD
|
| 892 |
+
path: data/TCGA-LUAD/uni_v2/20x/*.parquet
|
| 893 |
+
- split: TCGA_LUSC
|
| 894 |
+
path: data/TCGA-LUSC/uni_v2/20x/*.parquet
|
| 895 |
+
- split: TCGA_MESO
|
| 896 |
+
path: data/TCGA-MESO/uni_v2/20x/*.parquet
|
| 897 |
+
- split: TCGA_OV
|
| 898 |
+
path: data/TCGA-OV/uni_v2/20x/*.parquet
|
| 899 |
+
- split: TCGA_PAAD
|
| 900 |
+
path: data/TCGA-PAAD/uni_v2/20x/*.parquet
|
| 901 |
+
- split: TCGA_PCPG
|
| 902 |
+
path: data/TCGA-PCPG/uni_v2/20x/*.parquet
|
| 903 |
+
- split: TCGA_PRAD
|
| 904 |
+
path: data/TCGA-PRAD/uni_v2/20x/*.parquet
|
| 905 |
+
- split: TCGA_READ
|
| 906 |
+
path: data/TCGA-READ/uni_v2/20x/*.parquet
|
| 907 |
+
- split: TCGA_SARC
|
| 908 |
+
path: data/TCGA-SARC/uni_v2/20x/*.parquet
|
| 909 |
+
- split: TCGA_SKCM
|
| 910 |
+
path: data/TCGA-SKCM/uni_v2/20x/*.parquet
|
| 911 |
+
- split: TCGA_STAD
|
| 912 |
+
path: data/TCGA-STAD/uni_v2/20x/*.parquet
|
| 913 |
+
- split: TCGA_TGCT
|
| 914 |
+
path: data/TCGA-TGCT/uni_v2/20x/*.parquet
|
| 915 |
+
- split: TCGA_THCA
|
| 916 |
+
path: data/TCGA-THCA/uni_v2/20x/*.parquet
|
| 917 |
+
- split: TCGA_THYM
|
| 918 |
+
path: data/TCGA-THYM/uni_v2/20x/*.parquet
|
| 919 |
+
- split: TCGA_UCEC
|
| 920 |
+
path: data/TCGA-UCEC/uni_v2/20x/*.parquet
|
| 921 |
+
- split: TCGA_UCS
|
| 922 |
+
path: data/TCGA-UCS/uni_v2/20x/*.parquet
|
| 923 |
+
- split: TCGA_UVM
|
| 924 |
+
path: data/TCGA-UVM/uni_v2/20x/*.parquet
|
| 925 |
+
- config_name: uni_v2_5x
|
| 926 |
+
data_files:
|
| 927 |
+
- split: TCGA_ACC
|
| 928 |
+
path: data/TCGA-ACC/uni_v2/5x/*.parquet
|
| 929 |
+
- split: TCGA_BLCA
|
| 930 |
+
path: data/TCGA-BLCA/uni_v2/5x/*.parquet
|
| 931 |
+
- split: TCGA_BRCA
|
| 932 |
+
path: data/TCGA-BRCA/uni_v2/5x/*.parquet
|
| 933 |
+
- split: TCGA_CESC
|
| 934 |
+
path: data/TCGA-CESC/uni_v2/5x/*.parquet
|
| 935 |
+
- split: TCGA_CHOL
|
| 936 |
+
path: data/TCGA-CHOL/uni_v2/5x/*.parquet
|
| 937 |
+
- split: TCGA_COAD
|
| 938 |
+
path: data/TCGA-COAD/uni_v2/5x/*.parquet
|
| 939 |
+
- split: TCGA_DLBC
|
| 940 |
+
path: data/TCGA-DLBC/uni_v2/5x/*.parquet
|
| 941 |
+
- split: TCGA_ESCA
|
| 942 |
+
path: data/TCGA-ESCA/uni_v2/5x/*.parquet
|
| 943 |
+
- split: TCGA_GBM
|
| 944 |
+
path: data/TCGA-GBM/uni_v2/5x/*.parquet
|
| 945 |
+
- split: TCGA_HNSC
|
| 946 |
+
path: data/TCGA-HNSC/uni_v2/5x/*.parquet
|
| 947 |
+
- split: TCGA_KICH
|
| 948 |
+
path: data/TCGA-KICH/uni_v2/5x/*.parquet
|
| 949 |
+
- split: TCGA_KIRC
|
| 950 |
+
path: data/TCGA-KIRC/uni_v2/5x/*.parquet
|
| 951 |
+
- split: TCGA_KIRP
|
| 952 |
+
path: data/TCGA-KIRP/uni_v2/5x/*.parquet
|
| 953 |
+
- split: TCGA_LGG
|
| 954 |
+
path: data/TCGA-LGG/uni_v2/5x/*.parquet
|
| 955 |
+
- split: TCGA_LIHC
|
| 956 |
+
path: data/TCGA-LIHC/uni_v2/5x/*.parquet
|
| 957 |
+
- split: TCGA_LUAD
|
| 958 |
+
path: data/TCGA-LUAD/uni_v2/5x/*.parquet
|
| 959 |
+
- split: TCGA_LUSC
|
| 960 |
+
path: data/TCGA-LUSC/uni_v2/5x/*.parquet
|
| 961 |
+
- split: TCGA_MESO
|
| 962 |
+
path: data/TCGA-MESO/uni_v2/5x/*.parquet
|
| 963 |
+
- split: TCGA_OV
|
| 964 |
+
path: data/TCGA-OV/uni_v2/5x/*.parquet
|
| 965 |
+
- split: TCGA_PAAD
|
| 966 |
+
path: data/TCGA-PAAD/uni_v2/5x/*.parquet
|
| 967 |
+
- split: TCGA_PCPG
|
| 968 |
+
path: data/TCGA-PCPG/uni_v2/5x/*.parquet
|
| 969 |
+
- split: TCGA_PRAD
|
| 970 |
+
path: data/TCGA-PRAD/uni_v2/5x/*.parquet
|
| 971 |
+
- split: TCGA_READ
|
| 972 |
+
path: data/TCGA-READ/uni_v2/5x/*.parquet
|
| 973 |
+
- split: TCGA_SARC
|
| 974 |
+
path: data/TCGA-SARC/uni_v2/5x/*.parquet
|
| 975 |
+
- split: TCGA_SKCM
|
| 976 |
+
path: data/TCGA-SKCM/uni_v2/5x/*.parquet
|
| 977 |
+
- split: TCGA_STAD
|
| 978 |
+
path: data/TCGA-STAD/uni_v2/5x/*.parquet
|
| 979 |
+
- split: TCGA_TGCT
|
| 980 |
+
path: data/TCGA-TGCT/uni_v2/5x/*.parquet
|
| 981 |
+
- split: TCGA_THCA
|
| 982 |
+
path: data/TCGA-THCA/uni_v2/5x/*.parquet
|
| 983 |
+
- split: TCGA_THYM
|
| 984 |
+
path: data/TCGA-THYM/uni_v2/5x/*.parquet
|
| 985 |
+
- split: TCGA_UCEC
|
| 986 |
+
path: data/TCGA-UCEC/uni_v2/5x/*.parquet
|
| 987 |
+
- split: TCGA_UCS
|
| 988 |
+
path: data/TCGA-UCS/uni_v2/5x/*.parquet
|
| 989 |
+
- split: TCGA_UVM
|
| 990 |
+
path: data/TCGA-UVM/uni_v2/5x/*.parquet
|
| 991 |
+
---
|
| 992 |
|
| 993 |
+
# TCGA Pathology Feature Atlas
|
| 994 |
|
| 995 |
+
This repository stores verified TCGA pathology foundation-model embeddings as sharded Parquet files.
|
| 996 |
|
| 997 |
+
Physical layout:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 998 |
|
| 999 |
+
```text
|
| 1000 |
+
data/{project_id}/{model_name}/{magnification}/part-*.parquet
|
| 1001 |
+
```
|
| 1002 |
|
| 1003 |
+
## Included release scope
|
| 1004 |
+
|
| 1005 |
+
- Models: chief, conch_v1, ctranspath, gigapath_slide, titan, uni_v1, uni_v2
|
| 1006 |
+
- Groups: 479
|
| 1007 |
+
- Shards: 3,101
|
| 1008 |
+
- Embedding rows: 2,861,435
|
| 1009 |
+
- Registry rows: 174,761
|
| 1010 |
+
- H5 validation rows: 174,761
|
| 1011 |
- H5 validation failures: 0
|
| 1012 |
|
| 1013 |
+
Each row is a chunk of patch or slide embeddings from one TCGA slide.
|
| 1014 |
+
|
| 1015 |
+
Example streaming load:
|
| 1016 |
+
|
| 1017 |
+
```python
|
| 1018 |
+
from datasets import load_dataset
|
| 1019 |
+
|
| 1020 |
+
ds = load_dataset("IUCompPath/TRACE", name="conch_v1_20x", split="TCGA_BRCA", streaming=True)
|
| 1021 |
+
```
|
metadata/upload_status.json
CHANGED
|
@@ -1,7 +1,7 @@
|
|
| 1 |
{
|
| 2 |
"schema_version": 1,
|
| 3 |
"manifest_type": "tcga_atlas_upload_status",
|
| 4 |
-
"generated_utc": "2026-09-30T08:
|
| 5 |
"dataset_root": "/N/project/hancock/hf_tcga_atlas_test",
|
| 6 |
"hub_target": "IUCompPath/TRACE",
|
| 7 |
"omitted_models": {
|
|
@@ -152,7 +152,7 @@
|
|
| 152 |
"not_available": 4
|
| 153 |
},
|
| 154 |
"local_ready_groups": 1146,
|
| 155 |
-
"uploaded_groups":
|
| 156 |
"failed_groups": 0,
|
| 157 |
"excluded_groups": 2,
|
| 158 |
"not_available_groups": 4,
|
|
@@ -163,7 +163,7 @@
|
|
| 163 |
"local_ready_compressed_file_size_bytes": 13733315395411,
|
| 164 |
"local_ready_estimated_uncompressed_bytes": 14810878690263,
|
| 165 |
"validation_non_ok": 0,
|
| 166 |
-
"pending_upload_groups":
|
| 167 |
"upload_failed_groups": 0
|
| 168 |
},
|
| 169 |
"statistics": {
|
|
@@ -1031,6 +1031,55 @@
|
|
| 1031 |
"shard_count": 671,
|
| 1032 |
"row_count": 862556,
|
| 1033 |
"compressed_file_size_bytes": 617448708035
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1034 |
}
|
| 1035 |
],
|
| 1036 |
"cells": [
|
|
@@ -1040,11 +1089,11 @@
|
|
| 1040 |
"magnification": "10x",
|
| 1041 |
"group": "TCGA-ACC/chief/10x",
|
| 1042 |
"status": "local_ready",
|
| 1043 |
-
"uploaded":
|
| 1044 |
-
"upload_job_id":
|
| 1045 |
-
"uploaded_revision":
|
| 1046 |
-
"uploaded_commit":
|
| 1047 |
-
"last_upload_attempt_utc":
|
| 1048 |
"exclusion_reason": null,
|
| 1049 |
"quarantine": null,
|
| 1050 |
"feature_types": [
|
|
@@ -1069,11 +1118,11 @@
|
|
| 1069 |
"magnification": "10x",
|
| 1070 |
"group": "TCGA-BLCA/chief/10x",
|
| 1071 |
"status": "local_ready",
|
| 1072 |
-
"uploaded":
|
| 1073 |
-
"upload_job_id":
|
| 1074 |
-
"uploaded_revision":
|
| 1075 |
-
"uploaded_commit":
|
| 1076 |
-
"last_upload_attempt_utc":
|
| 1077 |
"exclusion_reason": null,
|
| 1078 |
"quarantine": null,
|
| 1079 |
"feature_types": [
|
|
@@ -1098,11 +1147,11 @@
|
|
| 1098 |
"magnification": "10x",
|
| 1099 |
"group": "TCGA-BRCA/chief/10x",
|
| 1100 |
"status": "local_ready",
|
| 1101 |
-
"uploaded":
|
| 1102 |
-
"upload_job_id":
|
| 1103 |
-
"uploaded_revision":
|
| 1104 |
-
"uploaded_commit":
|
| 1105 |
-
"last_upload_attempt_utc":
|
| 1106 |
"exclusion_reason": null,
|
| 1107 |
"quarantine": null,
|
| 1108 |
"feature_types": [
|
|
@@ -1127,11 +1176,11 @@
|
|
| 1127 |
"magnification": "10x",
|
| 1128 |
"group": "TCGA-CESC/chief/10x",
|
| 1129 |
"status": "local_ready",
|
| 1130 |
-
"uploaded":
|
| 1131 |
-
"upload_job_id":
|
| 1132 |
-
"uploaded_revision":
|
| 1133 |
-
"uploaded_commit":
|
| 1134 |
-
"last_upload_attempt_utc":
|
| 1135 |
"exclusion_reason": null,
|
| 1136 |
"quarantine": null,
|
| 1137 |
"feature_types": [
|
|
@@ -1156,11 +1205,11 @@
|
|
| 1156 |
"magnification": "10x",
|
| 1157 |
"group": "TCGA-CHOL/chief/10x",
|
| 1158 |
"status": "local_ready",
|
| 1159 |
-
"uploaded":
|
| 1160 |
-
"upload_job_id":
|
| 1161 |
-
"uploaded_revision":
|
| 1162 |
-
"uploaded_commit":
|
| 1163 |
-
"last_upload_attempt_utc":
|
| 1164 |
"exclusion_reason": null,
|
| 1165 |
"quarantine": null,
|
| 1166 |
"feature_types": [
|
|
@@ -1185,11 +1234,11 @@
|
|
| 1185 |
"magnification": "10x",
|
| 1186 |
"group": "TCGA-COAD/chief/10x",
|
| 1187 |
"status": "local_ready",
|
| 1188 |
-
"uploaded":
|
| 1189 |
-
"upload_job_id":
|
| 1190 |
-
"uploaded_revision":
|
| 1191 |
-
"uploaded_commit":
|
| 1192 |
-
"last_upload_attempt_utc":
|
| 1193 |
"exclusion_reason": null,
|
| 1194 |
"quarantine": null,
|
| 1195 |
"feature_types": [
|
|
@@ -1214,11 +1263,11 @@
|
|
| 1214 |
"magnification": "10x",
|
| 1215 |
"group": "TCGA-DLBC/chief/10x",
|
| 1216 |
"status": "local_ready",
|
| 1217 |
-
"uploaded":
|
| 1218 |
-
"upload_job_id":
|
| 1219 |
-
"uploaded_revision":
|
| 1220 |
-
"uploaded_commit":
|
| 1221 |
-
"last_upload_attempt_utc":
|
| 1222 |
"exclusion_reason": null,
|
| 1223 |
"quarantine": null,
|
| 1224 |
"feature_types": [
|
|
@@ -1243,11 +1292,11 @@
|
|
| 1243 |
"magnification": "10x",
|
| 1244 |
"group": "TCGA-ESCA/chief/10x",
|
| 1245 |
"status": "local_ready",
|
| 1246 |
-
"uploaded":
|
| 1247 |
-
"upload_job_id":
|
| 1248 |
-
"uploaded_revision":
|
| 1249 |
-
"uploaded_commit":
|
| 1250 |
-
"last_upload_attempt_utc":
|
| 1251 |
"exclusion_reason": null,
|
| 1252 |
"quarantine": null,
|
| 1253 |
"feature_types": [
|
|
@@ -1272,11 +1321,11 @@
|
|
| 1272 |
"magnification": "10x",
|
| 1273 |
"group": "TCGA-GBM/chief/10x",
|
| 1274 |
"status": "local_ready",
|
| 1275 |
-
"uploaded":
|
| 1276 |
-
"upload_job_id":
|
| 1277 |
-
"uploaded_revision":
|
| 1278 |
-
"uploaded_commit":
|
| 1279 |
-
"last_upload_attempt_utc":
|
| 1280 |
"exclusion_reason": null,
|
| 1281 |
"quarantine": null,
|
| 1282 |
"feature_types": [
|
|
@@ -1301,11 +1350,11 @@
|
|
| 1301 |
"magnification": "10x",
|
| 1302 |
"group": "TCGA-HNSC/chief/10x",
|
| 1303 |
"status": "local_ready",
|
| 1304 |
-
"uploaded":
|
| 1305 |
-
"upload_job_id":
|
| 1306 |
-
"uploaded_revision":
|
| 1307 |
-
"uploaded_commit":
|
| 1308 |
-
"last_upload_attempt_utc":
|
| 1309 |
"exclusion_reason": null,
|
| 1310 |
"quarantine": null,
|
| 1311 |
"feature_types": [
|
|
@@ -1330,11 +1379,11 @@
|
|
| 1330 |
"magnification": "10x",
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| 1331 |
"group": "TCGA-KICH/chief/10x",
|
| 1332 |
"status": "local_ready",
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| 1333 |
-
"uploaded":
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| 1334 |
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| 1340 |
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@@ -1359,11 +1408,11 @@
|
|
| 1359 |
"magnification": "10x",
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| 1360 |
"group": "TCGA-KIRC/chief/10x",
|
| 1361 |
"status": "local_ready",
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| 1362 |
-
"uploaded":
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| 1363 |
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| 1364 |
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@@ -1388,11 +1437,11 @@
|
|
| 1388 |
"magnification": "10x",
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| 1389 |
"group": "TCGA-KIRP/chief/10x",
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| 1390 |
"status": "local_ready",
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| 1391 |
-
"uploaded":
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| 1392 |
-
"upload_job_id":
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| 1397 |
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@@ -1417,11 +1466,11 @@
|
|
| 1417 |
"magnification": "10x",
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| 1418 |
"group": "TCGA-LGG/chief/10x",
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| 1419 |
"status": "local_ready",
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| 1420 |
-
"uploaded":
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| 1421 |
-
"upload_job_id":
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"uploaded_revision":
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| 1426 |
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@@ -1446,11 +1495,11 @@
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| 1446 |
"magnification": "10x",
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| 1447 |
"group": "TCGA-LIHC/chief/10x",
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| 1448 |
"status": "local_ready",
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| 1449 |
-
"uploaded":
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| 1450 |
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"upload_job_id":
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@@ -1475,11 +1524,11 @@
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|
| 1475 |
"magnification": "10x",
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| 1476 |
"group": "TCGA-LUAD/chief/10x",
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| 1477 |
"status": "local_ready",
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| 1478 |
-
"uploaded":
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| 1479 |
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"upload_job_id":
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@@ -1504,11 +1553,11 @@
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|
| 1504 |
"magnification": "10x",
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| 1505 |
"group": "TCGA-LUSC/chief/10x",
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| 1506 |
"status": "local_ready",
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| 1507 |
-
"uploaded":
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| 1508 |
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| 1512 |
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@@ -1533,11 +1582,11 @@
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|
| 1533 |
"magnification": "10x",
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| 1534 |
"group": "TCGA-MESO/chief/10x",
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| 1535 |
"status": "local_ready",
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| 1536 |
-
"uploaded":
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| 1537 |
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"upload_job_id":
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| 1538 |
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| 1541 |
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| 1542 |
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@@ -1562,11 +1611,11 @@
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|
| 1562 |
"magnification": "10x",
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| 1563 |
"group": "TCGA-OV/chief/10x",
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| 1564 |
"status": "local_ready",
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| 1565 |
-
"uploaded":
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| 1566 |
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"upload_job_id":
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| 1567 |
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| 1568 |
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| 1569 |
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| 1570 |
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| 1572 |
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@@ -1591,11 +1640,11 @@
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|
| 1591 |
"magnification": "10x",
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| 1592 |
"group": "TCGA-PAAD/chief/10x",
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| 1593 |
"status": "local_ready",
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| 1594 |
-
"uploaded":
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| 1595 |
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"upload_job_id":
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"uploaded_revision":
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"uploaded_commit":
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| 1599 |
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| 1601 |
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@@ -1620,11 +1669,11 @@
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|
| 1620 |
"magnification": "10x",
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| 1621 |
"group": "TCGA-PCPG/chief/10x",
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| 1622 |
"status": "local_ready",
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| 1623 |
-
"uploaded":
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| 1624 |
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"upload_job_id":
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| 1649 |
"magnification": "10x",
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| 1650 |
"group": "TCGA-PRAD/chief/10x",
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| 1651 |
"status": "local_ready",
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| 1652 |
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"uploaded":
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| 1653 |
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"upload_job_id":
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@@ -1678,11 +1727,11 @@
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|
| 1678 |
"magnification": "10x",
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| 1679 |
"group": "TCGA-READ/chief/10x",
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| 1680 |
"status": "local_ready",
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| 1681 |
-
"uploaded":
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| 1682 |
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"upload_job_id":
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"uploaded_revision":
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| 1684 |
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| 1686 |
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| 1687 |
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| 1688 |
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@@ -1707,11 +1756,11 @@
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|
| 1707 |
"magnification": "10x",
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| 1708 |
"group": "TCGA-SARC/chief/10x",
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| 1709 |
"status": "local_ready",
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| 1710 |
-
"uploaded":
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| 1711 |
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"upload_job_id":
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| 1712 |
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"uploaded_revision":
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| 1715 |
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@@ -1736,11 +1785,11 @@
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|
| 1736 |
"magnification": "10x",
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| 1737 |
"group": "TCGA-SKCM/chief/10x",
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| 1738 |
"status": "local_ready",
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| 1739 |
-
"uploaded":
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| 1740 |
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"upload_job_id":
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"uploaded_revision":
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| 1744 |
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@@ -1765,11 +1814,11 @@
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|
| 1765 |
"magnification": "10x",
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| 1766 |
"group": "TCGA-STAD/chief/10x",
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| 1767 |
"status": "local_ready",
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| 1768 |
-
"uploaded":
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| 1769 |
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"upload_job_id":
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| 1770 |
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| 1773 |
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@@ -1794,11 +1843,11 @@
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|
| 1794 |
"magnification": "10x",
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| 1795 |
"group": "TCGA-TGCT/chief/10x",
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| 1796 |
"status": "not_available",
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| 1797 |
-
"uploaded":
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| 1798 |
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"upload_job_id":
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| 1799 |
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"uploaded_revision":
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| 1800 |
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| 1801 |
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| 1802 |
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| 1803 |
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| 1804 |
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|
@@ -1819,11 +1868,11 @@
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|
| 1819 |
"magnification": "10x",
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| 1820 |
"group": "TCGA-THCA/chief/10x",
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| 1821 |
"status": "local_ready",
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| 1822 |
-
"uploaded":
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| 1823 |
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"upload_job_id":
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| 1824 |
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"uploaded_revision":
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| 1825 |
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"uploaded_commit":
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| 1826 |
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| 1827 |
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| 1828 |
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| 1829 |
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@@ -1848,11 +1897,11 @@
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|
| 1848 |
"magnification": "10x",
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| 1849 |
"group": "TCGA-THYM/chief/10x",
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| 1850 |
"status": "local_ready",
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| 1851 |
-
"uploaded":
|
| 1852 |
-
"upload_job_id":
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| 1853 |
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"uploaded_revision":
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| 1854 |
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| 1855 |
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| 1856 |
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| 1857 |
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| 1858 |
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@@ -1877,11 +1926,11 @@
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|
| 1877 |
"magnification": "10x",
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| 1878 |
"group": "TCGA-UCEC/chief/10x",
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| 1879 |
"status": "local_ready",
|
| 1880 |
-
"uploaded":
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| 1881 |
-
"upload_job_id":
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| 1882 |
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"uploaded_revision":
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| 1883 |
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| 1884 |
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| 1885 |
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| 1886 |
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| 1887 |
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@@ -1906,11 +1955,11 @@
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|
| 1906 |
"magnification": "10x",
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| 1907 |
"group": "TCGA-UCS/chief/10x",
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| 1908 |
"status": "local_ready",
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| 1909 |
-
"uploaded":
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| 1910 |
-
"upload_job_id":
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| 1911 |
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| 1913 |
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@@ -1935,11 +1984,11 @@
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|
| 1935 |
"magnification": "10x",
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| 1936 |
"group": "TCGA-UVM/chief/10x",
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| 1937 |
"status": "local_ready",
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| 1938 |
-
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| 1939 |
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"upload_job_id":
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| 1940 |
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| 1941 |
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| 1942 |
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| 1943 |
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| 1944 |
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| 1945 |
"feature_types": [
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|
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|
| 1 |
{
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| 2 |
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| 3 |
"manifest_type": "tcga_atlas_upload_status",
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| 4 |
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"generated_utc": "2026-09-30T08:55:58.992030+00:00",
|
| 5 |
"dataset_root": "/N/project/hancock/hf_tcga_atlas_test",
|
| 6 |
"hub_target": "IUCompPath/TRACE",
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| 7 |
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|
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|
| 152 |
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| 153 |
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| 154 |
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| 156 |
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| 157 |
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| 163 |
"local_ready_compressed_file_size_bytes": 13733315395411,
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| 164 |
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| 165 |
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| 169 |
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{
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"chief"
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],
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"TCGA-ACC/chief/10x",
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| 1047 |
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"TCGA-BLCA/chief/10x",
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| 1048 |
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"TCGA-BRCA/chief/10x",
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| 1049 |
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| 1050 |
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"TCGA-CHOL/chief/10x",
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| 1051 |
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"TCGA-COAD/chief/10x",
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| 1052 |
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"TCGA-DLBC/chief/10x",
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| 1053 |
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"TCGA-ESCA/chief/10x",
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| 1054 |
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"TCGA-GBM/chief/10x",
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| 1055 |
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"TCGA-HNSC/chief/10x",
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| 1056 |
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"TCGA-KICH/chief/10x",
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| 1057 |
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"TCGA-KIRC/chief/10x",
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| 1058 |
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"TCGA-KIRP/chief/10x",
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| 1059 |
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"TCGA-LGG/chief/10x",
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| 1060 |
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"TCGA-LIHC/chief/10x",
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| 1061 |
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"TCGA-LUAD/chief/10x",
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| 1062 |
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"TCGA-LUSC/chief/10x",
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| 1063 |
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"TCGA-MESO/chief/10x",
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| 1064 |
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"TCGA-OV/chief/10x",
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| 1065 |
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"TCGA-PAAD/chief/10x",
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| 1066 |
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"TCGA-PCPG/chief/10x",
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| 1067 |
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"TCGA-PRAD/chief/10x",
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| 1068 |
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"TCGA-READ/chief/10x",
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| 1069 |
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"TCGA-SARC/chief/10x",
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| 1070 |
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"TCGA-SKCM/chief/10x",
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| 1071 |
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"TCGA-STAD/chief/10x",
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| 1072 |
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"TCGA-TGCT/chief/10x",
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| 1073 |
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"TCGA-THCA/chief/10x",
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| 1074 |
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"TCGA-THYM/chief/10x",
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| 1075 |
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"TCGA-UCEC/chief/10x",
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| 1076 |
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"TCGA-UCS/chief/10x",
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| 1077 |
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"TCGA-UVM/chief/10x"
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| 1078 |
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| 1089 |
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| 1090 |
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| 1991 |
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"last_upload_attempt_utc": "2026-09-30T08:55:58.992030+00:00",
|
| 1992 |
"exclusion_reason": null,
|
| 1993 |
"quarantine": null,
|
| 1994 |
"feature_types": [
|