diff --git "a/metadata/upload_status.json" "b/metadata/upload_status.json" --- "a/metadata/upload_status.json" +++ "b/metadata/upload_status.json" @@ -1,8 +1,8 @@ { "schema_version": 1, - "manifest_type": "tcga_atlas_upload_status_partial", - "generated_utc": "2026-09-29T22:13:50.963174+00:00", - "dataset_root": "/N/project/hancock/tcga_upload_stage_conch_v1_v0_1", + "manifest_type": "tcga_atlas_upload_status", + "generated_utc": "2026-09-29T22:38:11.457231+00:00", + "dataset_root": "/N/project/hancock/hf_tcga_atlas_test", "hub_target": "IUCompPath/TRACE", "omitted_models": { "midnight12k": "Removed from this upload plan; local atlas data is retained.", @@ -23,9 +23,20 @@ }, "axes": { "x_model": [ + "chief", + "conch_v1", + "conch_v15", + "ctranspath", + "gigapath", "gigapath_slide", + "hibou_l", + "hoptimus0", + "hoptimus1", "titan", - "conch_v1" + "uni_v1", + "uni_v2", + "virchow", + "virchow2" ], "y_cancer_project": [ "TCGA-ACC", @@ -62,18 +73,71 @@ "TCGA-UVM" ], "z_magnification": [ + "5x", "10x", - "20x", - "5x" + "20x" ], "model_magnifications": { + "chief": [ + "10x" + ], + "conch_v1": [ + "5x", + "10x", + "20x" + ], + "conch_v15": [ + "5x", + "10x", + "20x" + ], + "ctranspath": [ + "5x", + "10x", + "20x" + ], + "gigapath": [ + "5x", + "10x", + "20x" + ], "gigapath_slide": [ "20x" ], + "hibou_l": [ + "5x", + "10x", + "20x" + ], + "hoptimus0": [ + "5x", + "10x", + "20x" + ], + "hoptimus1": [ + "5x", + "10x", + "20x" + ], "titan": [ "20x" ], - "conch_v1": [ + "uni_v1": [ + "5x", + "10x", + "20x" + ], + "uni_v2": [ + "5x", + "10x", + "20x" + ], + "virchow": [ + "5x", + "10x", + "20x" + ], + "virchow2": [ "5x", "10x", "20x" @@ -81,256 +145,371 @@ } }, "summary": { - "expected_group_cells": 160, + "expected_group_cells": 1152, "status_counts": { - "local_ready": 160 + "excluded": 2, + "local_ready": 1146, + "not_available": 4 }, - "local_ready_groups": 160, - "uploaded_groups": 64, + "local_ready_groups": 1146, + "uploaded_groups": 160, "failed_groups": 0, - 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