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Datasets:
IUCompPath
/
TRACE

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Record verified TCGA gigapath branch integration

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Update cumulative upload ledger and dataset card after branch integration job 8381190.

Files changed (7) hide show
  1. README.md +219 -7
  2. metadata/h5_validation.parquet +2 -2
  3. metadata/nested_index.json +1546 -0
  4. metadata/release.json +98 -2
  5. metadata/shard_manifest.parquet +2 -2
  6. metadata/slide_registry.parquet +2 -2
  7. metadata/upload_status.json +596 -483
README.md CHANGED
@@ -460,6 +460,204 @@ configs:
460
  path: data/TCGA-UCS/ctranspath/5x/*.parquet
461
  - split: TCGA_UVM
462
  path: data/TCGA-UVM/ctranspath/5x/*.parquet
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
463
  - config_name: gigapath_slide_20x
464
  data_files:
465
  - split: TCGA_ACC
@@ -994,14 +1192,28 @@ configs:
994
 
995
  This repository stores verified TCGA pathology foundation-model embeddings as sharded Parquet files.
996
 
 
 
 
 
 
 
997
  ## Included release scope
998
 
999
- - Models: chief, conch_v1, ctranspath, gigapath_slide, titan, uni_v1, uni_v2
1000
- - Groups: 479
1001
- - Shards: 3,101
1002
- - Embedding rows: 2,861,435
1003
- - Registry rows: 174,761
1004
- - H5 validation rows: 174,761
1005
  - H5 validation failures: 0
1006
 
1007
- Physical layout: data/{project_id}/{model_name}/{magnification}/part-*.parquet
 
 
 
 
 
 
 
 
 
460
  path: data/TCGA-UCS/ctranspath/5x/*.parquet
461
  - split: TCGA_UVM
462
  path: data/TCGA-UVM/ctranspath/5x/*.parquet
463
+ - config_name: gigapath_10x
464
+ data_files:
465
+ - split: TCGA_ACC
466
+ path: data/TCGA-ACC/gigapath/10x/*.parquet
467
+ - split: TCGA_BLCA
468
+ path: data/TCGA-BLCA/gigapath/10x/*.parquet
469
+ - split: TCGA_BRCA
470
+ path: data/TCGA-BRCA/gigapath/10x/*.parquet
471
+ - split: TCGA_CESC
472
+ path: data/TCGA-CESC/gigapath/10x/*.parquet
473
+ - split: TCGA_CHOL
474
+ path: data/TCGA-CHOL/gigapath/10x/*.parquet
475
+ - split: TCGA_COAD
476
+ path: data/TCGA-COAD/gigapath/10x/*.parquet
477
+ - split: TCGA_DLBC
478
+ path: data/TCGA-DLBC/gigapath/10x/*.parquet
479
+ - split: TCGA_ESCA
480
+ path: data/TCGA-ESCA/gigapath/10x/*.parquet
481
+ - split: TCGA_GBM
482
+ path: data/TCGA-GBM/gigapath/10x/*.parquet
483
+ - split: TCGA_HNSC
484
+ path: data/TCGA-HNSC/gigapath/10x/*.parquet
485
+ - split: TCGA_KICH
486
+ path: data/TCGA-KICH/gigapath/10x/*.parquet
487
+ - split: TCGA_KIRC
488
+ path: data/TCGA-KIRC/gigapath/10x/*.parquet
489
+ - split: TCGA_KIRP
490
+ path: data/TCGA-KIRP/gigapath/10x/*.parquet
491
+ - split: TCGA_LGG
492
+ path: data/TCGA-LGG/gigapath/10x/*.parquet
493
+ - split: TCGA_LIHC
494
+ path: data/TCGA-LIHC/gigapath/10x/*.parquet
495
+ - split: TCGA_LUAD
496
+ path: data/TCGA-LUAD/gigapath/10x/*.parquet
497
+ - split: TCGA_LUSC
498
+ path: data/TCGA-LUSC/gigapath/10x/*.parquet
499
+ - split: TCGA_MESO
500
+ path: data/TCGA-MESO/gigapath/10x/*.parquet
501
+ - split: TCGA_OV
502
+ path: data/TCGA-OV/gigapath/10x/*.parquet
503
+ - split: TCGA_PAAD
504
+ path: data/TCGA-PAAD/gigapath/10x/*.parquet
505
+ - split: TCGA_PCPG
506
+ path: data/TCGA-PCPG/gigapath/10x/*.parquet
507
+ - split: TCGA_PRAD
508
+ path: data/TCGA-PRAD/gigapath/10x/*.parquet
509
+ - split: TCGA_READ
510
+ path: data/TCGA-READ/gigapath/10x/*.parquet
511
+ - split: TCGA_SARC
512
+ path: data/TCGA-SARC/gigapath/10x/*.parquet
513
+ - split: TCGA_SKCM
514
+ path: data/TCGA-SKCM/gigapath/10x/*.parquet
515
+ - split: TCGA_STAD
516
+ path: data/TCGA-STAD/gigapath/10x/*.parquet
517
+ - split: TCGA_TGCT
518
+ path: data/TCGA-TGCT/gigapath/10x/*.parquet
519
+ - split: TCGA_THCA
520
+ path: data/TCGA-THCA/gigapath/10x/*.parquet
521
+ - split: TCGA_THYM
522
+ path: data/TCGA-THYM/gigapath/10x/*.parquet
523
+ - split: TCGA_UCEC
524
+ path: data/TCGA-UCEC/gigapath/10x/*.parquet
525
+ - split: TCGA_UCS
526
+ path: data/TCGA-UCS/gigapath/10x/*.parquet
527
+ - split: TCGA_UVM
528
+ path: data/TCGA-UVM/gigapath/10x/*.parquet
529
+ - config_name: gigapath_20x
530
+ data_files:
531
+ - split: TCGA_ACC
532
+ path: data/TCGA-ACC/gigapath/20x/*.parquet
533
+ - split: TCGA_BLCA
534
+ path: data/TCGA-BLCA/gigapath/20x/*.parquet
535
+ - split: TCGA_BRCA
536
+ path: data/TCGA-BRCA/gigapath/20x/*.parquet
537
+ - split: TCGA_CESC
538
+ path: data/TCGA-CESC/gigapath/20x/*.parquet
539
+ - split: TCGA_CHOL
540
+ path: data/TCGA-CHOL/gigapath/20x/*.parquet
541
+ - split: TCGA_COAD
542
+ path: data/TCGA-COAD/gigapath/20x/*.parquet
543
+ - split: TCGA_DLBC
544
+ path: data/TCGA-DLBC/gigapath/20x/*.parquet
545
+ - split: TCGA_ESCA
546
+ path: data/TCGA-ESCA/gigapath/20x/*.parquet
547
+ - split: TCGA_GBM
548
+ path: data/TCGA-GBM/gigapath/20x/*.parquet
549
+ - split: TCGA_HNSC
550
+ path: data/TCGA-HNSC/gigapath/20x/*.parquet
551
+ - split: TCGA_KICH
552
+ path: data/TCGA-KICH/gigapath/20x/*.parquet
553
+ - split: TCGA_KIRC
554
+ path: data/TCGA-KIRC/gigapath/20x/*.parquet
555
+ - split: TCGA_KIRP
556
+ path: data/TCGA-KIRP/gigapath/20x/*.parquet
557
+ - split: TCGA_LGG
558
+ path: data/TCGA-LGG/gigapath/20x/*.parquet
559
+ - split: TCGA_LIHC
560
+ path: data/TCGA-LIHC/gigapath/20x/*.parquet
561
+ - split: TCGA_LUAD
562
+ path: data/TCGA-LUAD/gigapath/20x/*.parquet
563
+ - split: TCGA_LUSC
564
+ path: data/TCGA-LUSC/gigapath/20x/*.parquet
565
+ - split: TCGA_MESO
566
+ path: data/TCGA-MESO/gigapath/20x/*.parquet
567
+ - split: TCGA_OV
568
+ path: data/TCGA-OV/gigapath/20x/*.parquet
569
+ - split: TCGA_PAAD
570
+ path: data/TCGA-PAAD/gigapath/20x/*.parquet
571
+ - split: TCGA_PCPG
572
+ path: data/TCGA-PCPG/gigapath/20x/*.parquet
573
+ - split: TCGA_PRAD
574
+ path: data/TCGA-PRAD/gigapath/20x/*.parquet
575
+ - split: TCGA_READ
576
+ path: data/TCGA-READ/gigapath/20x/*.parquet
577
+ - split: TCGA_SARC
578
+ path: data/TCGA-SARC/gigapath/20x/*.parquet
579
+ - split: TCGA_SKCM
580
+ path: data/TCGA-SKCM/gigapath/20x/*.parquet
581
+ - split: TCGA_STAD
582
+ path: data/TCGA-STAD/gigapath/20x/*.parquet
583
+ - split: TCGA_TGCT
584
+ path: data/TCGA-TGCT/gigapath/20x/*.parquet
585
+ - split: TCGA_THCA
586
+ path: data/TCGA-THCA/gigapath/20x/*.parquet
587
+ - split: TCGA_THYM
588
+ path: data/TCGA-THYM/gigapath/20x/*.parquet
589
+ - split: TCGA_UCEC
590
+ path: data/TCGA-UCEC/gigapath/20x/*.parquet
591
+ - split: TCGA_UCS
592
+ path: data/TCGA-UCS/gigapath/20x/*.parquet
593
+ - split: TCGA_UVM
594
+ path: data/TCGA-UVM/gigapath/20x/*.parquet
595
+ - config_name: gigapath_5x
596
+ data_files:
597
+ - split: TCGA_ACC
598
+ path: data/TCGA-ACC/gigapath/5x/*.parquet
599
+ - split: TCGA_BLCA
600
+ path: data/TCGA-BLCA/gigapath/5x/*.parquet
601
+ - split: TCGA_BRCA
602
+ path: data/TCGA-BRCA/gigapath/5x/*.parquet
603
+ - split: TCGA_CESC
604
+ path: data/TCGA-CESC/gigapath/5x/*.parquet
605
+ - split: TCGA_CHOL
606
+ path: data/TCGA-CHOL/gigapath/5x/*.parquet
607
+ - split: TCGA_COAD
608
+ path: data/TCGA-COAD/gigapath/5x/*.parquet
609
+ - split: TCGA_DLBC
610
+ path: data/TCGA-DLBC/gigapath/5x/*.parquet
611
+ - split: TCGA_ESCA
612
+ path: data/TCGA-ESCA/gigapath/5x/*.parquet
613
+ - split: TCGA_GBM
614
+ path: data/TCGA-GBM/gigapath/5x/*.parquet
615
+ - split: TCGA_HNSC
616
+ path: data/TCGA-HNSC/gigapath/5x/*.parquet
617
+ - split: TCGA_KICH
618
+ path: data/TCGA-KICH/gigapath/5x/*.parquet
619
+ - split: TCGA_KIRC
620
+ path: data/TCGA-KIRC/gigapath/5x/*.parquet
621
+ - split: TCGA_KIRP
622
+ path: data/TCGA-KIRP/gigapath/5x/*.parquet
623
+ - split: TCGA_LGG
624
+ path: data/TCGA-LGG/gigapath/5x/*.parquet
625
+ - split: TCGA_LIHC
626
+ path: data/TCGA-LIHC/gigapath/5x/*.parquet
627
+ - split: TCGA_LUAD
628
+ path: data/TCGA-LUAD/gigapath/5x/*.parquet
629
+ - split: TCGA_LUSC
630
+ path: data/TCGA-LUSC/gigapath/5x/*.parquet
631
+ - split: TCGA_MESO
632
+ path: data/TCGA-MESO/gigapath/5x/*.parquet
633
+ - split: TCGA_OV
634
+ path: data/TCGA-OV/gigapath/5x/*.parquet
635
+ - split: TCGA_PAAD
636
+ path: data/TCGA-PAAD/gigapath/5x/*.parquet
637
+ - split: TCGA_PCPG
638
+ path: data/TCGA-PCPG/gigapath/5x/*.parquet
639
+ - split: TCGA_PRAD
640
+ path: data/TCGA-PRAD/gigapath/5x/*.parquet
641
+ - split: TCGA_READ
642
+ path: data/TCGA-READ/gigapath/5x/*.parquet
643
+ - split: TCGA_SARC
644
+ path: data/TCGA-SARC/gigapath/5x/*.parquet
645
+ - split: TCGA_SKCM
646
+ path: data/TCGA-SKCM/gigapath/5x/*.parquet
647
+ - split: TCGA_STAD
648
+ path: data/TCGA-STAD/gigapath/5x/*.parquet
649
+ - split: TCGA_TGCT
650
+ path: data/TCGA-TGCT/gigapath/5x/*.parquet
651
+ - split: TCGA_THCA
652
+ path: data/TCGA-THCA/gigapath/5x/*.parquet
653
+ - split: TCGA_THYM
654
+ path: data/TCGA-THYM/gigapath/5x/*.parquet
655
+ - split: TCGA_UCEC
656
+ path: data/TCGA-UCEC/gigapath/5x/*.parquet
657
+ - split: TCGA_UCS
658
+ path: data/TCGA-UCS/gigapath/5x/*.parquet
659
+ - split: TCGA_UVM
660
+ path: data/TCGA-UVM/gigapath/5x/*.parquet
661
  - config_name: gigapath_slide_20x
662
  data_files:
663
  - split: TCGA_ACC
 
1192
 
1193
  This repository stores verified TCGA pathology foundation-model embeddings as sharded Parquet files.
1194
 
1195
+ Physical layout:
1196
+
1197
+ ```text
1198
+ data/{project_id}/{model_name}/{magnification}/part-*.parquet
1199
+ ```
1200
+
1201
  ## Included release scope
1202
 
1203
+ - Models: chief, conch_v1, ctranspath, gigapath, gigapath_slide, titan, uni_v1, uni_v2
1204
+ - Groups: 575
1205
+ - Shards: 4,391
1206
+ - Embedding rows: 3,723,984
1207
+ - Registry rows: 209,764
1208
+ - H5 validation rows: 209,764
1209
  - H5 validation failures: 0
1210
 
1211
+ Each row is a chunk of patch or slide embeddings from one TCGA slide.
1212
+
1213
+ Example streaming load:
1214
+
1215
+ ```python
1216
+ from datasets import load_dataset
1217
+
1218
+ ds = load_dataset("IUCompPath/TRACE", name="conch_v1_20x", split="TCGA_BRCA", streaming=True)
1219
+ ```
metadata/h5_validation.parquet CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:4bb3a3ca771ae5fa0bcc372358e8fddf0c71087356c3b9305ed78a462a9dc221
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- size 12377019
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:cdcb0ef03109da300509e5461a1103c293fd652809c30b9901c9bcee6204b47c
3
+ size 14733346
metadata/nested_index.json CHANGED
@@ -44,6 +44,48 @@
44
  "data/TCGA-ACC/ctranspath/5x/part-00000.parquet"
45
  ]
46
  },
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
47
  "gigapath_slide": {
48
  "20x": [
49
  "data/TCGA-ACC/gigapath_slide/20x/part-00000.parquet"
@@ -192,6 +234,79 @@
192
  "data/TCGA-BLCA/ctranspath/5x/part-00001.parquet"
193
  ]
194
  },
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
195
  "gigapath_slide": {
196
  "20x": [
197
  "data/TCGA-BLCA/gigapath_slide/20x/part-00000.parquet"
@@ -427,6 +542,140 @@
427
  "data/TCGA-BRCA/ctranspath/5x/part-00003.parquet"
428
  ]
429
  },
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
430
  "gigapath_slide": {
431
  "20x": [
432
  "data/TCGA-BRCA/gigapath_slide/20x/part-00000.parquet"
@@ -704,6 +953,39 @@
704
  "data/TCGA-CESC/ctranspath/5x/part-00000.parquet"
705
  ]
706
  },
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
707
  "gigapath_slide": {
708
  "20x": [
709
  "data/TCGA-CESC/gigapath_slide/20x/part-00000.parquet"
@@ -803,6 +1085,22 @@
803
  "data/TCGA-CHOL/ctranspath/5x/part-00000.parquet"
804
  ]
805
  },
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
806
  "gigapath_slide": {
807
  "20x": [
808
  "data/TCGA-CHOL/gigapath_slide/20x/part-00000.parquet"
@@ -888,6 +1186,49 @@
888
  "data/TCGA-COAD/ctranspath/5x/part-00000.parquet"
889
  ]
890
  },
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
891
  "gigapath_slide": {
892
  "20x": [
893
  "data/TCGA-COAD/gigapath_slide/20x/part-00000.parquet"
@@ -1003,6 +1344,19 @@
1003
  "data/TCGA-DLBC/ctranspath/5x/part-00000.parquet"
1004
  ]
1005
  },
 
 
 
 
 
 
 
 
 
 
 
 
 
1006
  "gigapath_slide": {
1007
  "20x": [
1008
  "data/TCGA-DLBC/gigapath_slide/20x/part-00000.parquet"
@@ -1073,6 +1427,30 @@
1073
  "data/TCGA-ESCA/ctranspath/5x/part-00000.parquet"
1074
  ]
1075
  },
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1076
  "gigapath_slide": {
1077
  "20x": [
1078
  "data/TCGA-ESCA/gigapath_slide/20x/part-00000.parquet"
@@ -1192,6 +1570,83 @@
1192
  "data/TCGA-GBM/ctranspath/5x/part-00001.parquet"
1193
  ]
1194
  },
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1195
  "gigapath_slide": {
1196
  "20x": [
1197
  "data/TCGA-GBM/gigapath_slide/20x/part-00000.parquet"
@@ -1384,6 +1839,58 @@
1384
  "data/TCGA-HNSC/ctranspath/5x/part-00001.parquet"
1385
  ]
1386
  },
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1387
  "gigapath_slide": {
1388
  "20x": [
1389
  "data/TCGA-HNSC/gigapath_slide/20x/part-00000.parquet"
@@ -1519,6 +2026,29 @@
1519
  "data/TCGA-KICH/ctranspath/5x/part-00000.parquet"
1520
  ]
1521
  },
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1522
  "gigapath_slide": {
1523
  "20x": [
1524
  "data/TCGA-KICH/gigapath_slide/20x/part-00000.parquet"
@@ -1632,6 +2162,76 @@
1632
  "data/TCGA-KIRC/ctranspath/5x/part-00001.parquet"
1633
  ]
1634
  },
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1635
  "gigapath_slide": {
1636
  "20x": [
1637
  "data/TCGA-KIRC/gigapath_slide/20x/part-00000.parquet"
@@ -1807,6 +2407,47 @@
1807
  "data/TCGA-KIRP/ctranspath/5x/part-00000.parquet"
1808
  ]
1809
  },
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1810
  "gigapath_slide": {
1811
  "20x": [
1812
  "data/TCGA-KIRP/gigapath_slide/20x/part-00000.parquet"
@@ -1956,6 +2597,85 @@
1956
  "data/TCGA-LGG/ctranspath/5x/part-00001.parquet"
1957
  ]
1958
  },
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1959
  "gigapath_slide": {
1960
  "20x": [
1961
  "data/TCGA-LGG/gigapath_slide/20x/part-00000.parquet"
@@ -2152,6 +2872,56 @@
2152
  "data/TCGA-LIHC/ctranspath/5x/part-00001.parquet"
2153
  ]
2154
  },
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
2155
  "gigapath_slide": {
2156
  "20x": [
2157
  "data/TCGA-LIHC/gigapath_slide/20x/part-00000.parquet"
@@ -2306,6 +3076,67 @@
2306
  "data/TCGA-LUAD/ctranspath/5x/part-00001.parquet"
2307
  ]
2308
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2924
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3138
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3139
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3140
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3603
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3604
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3605
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3715
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3716
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3717
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3854
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3855
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3889
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3890
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3893
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4012
  "data/TCGA-PRAD/ctranspath/5x/part-00001.parquet"
4013
  ]
4014
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4056
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4058
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4060
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4062
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4064
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4065
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4069
+ "data/TCGA-PRAD/gigapath/5x/part-00002.parquet"
4070
+ ]
4071
+ },
4072
  "gigapath_slide": {
4073
  "20x": [
4074
  "data/TCGA-PRAD/gigapath_slide/20x/part-00000.parquet"
 
4209
  "data/TCGA-READ/ctranspath/5x/part-00000.parquet"
4210
  ]
4211
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4212
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4213
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4214
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4215
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4216
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4224
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4226
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4227
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4230
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4231
  "gigapath_slide": {
4232
  "20x": [
4233
  "data/TCGA-READ/gigapath_slide/20x/part-00000.parquet"
 
4349
  "data/TCGA-SARC/ctranspath/5x/part-00002.parquet"
4350
  ]
4351
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4352
+ "gigapath": {
4353
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4354
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4371
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4380
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4437
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4442
+ "data/TCGA-SARC/gigapath/5x/part-00004.parquet"
4443
+ ]
4444
+ },
4445
  "gigapath_slide": {
4446
  "20x": [
4447
  "data/TCGA-SARC/gigapath_slide/20x/part-00000.parquet"
 
4668
  "data/TCGA-SKCM/ctranspath/5x/part-00001.parquet"
4669
  ]
4670
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4671
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4685
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4730
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4731
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4735
+ "data/TCGA-SKCM/gigapath/5x/part-00002.parquet"
4736
+ ]
4737
+ },
4738
  "gigapath_slide": {
4739
  "20x": [
4740
  "data/TCGA-SKCM/gigapath_slide/20x/part-00000.parquet"
 
4907
  "data/TCGA-STAD/ctranspath/5x/part-00000.parquet"
4908
  ]
4909
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4910
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4911
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4913
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4920
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5340
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5505
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5506
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5764
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5765
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5952
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5953
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+ ],
5961
+ "20x": [
5962
+ "data/TCGA-UCS/gigapath/20x/part-00000.parquet",
5963
+ "data/TCGA-UCS/gigapath/20x/part-00001.parquet",
5964
+ "data/TCGA-UCS/gigapath/20x/part-00002.parquet",
5965
+ "data/TCGA-UCS/gigapath/20x/part-00003.parquet",
5966
+ "data/TCGA-UCS/gigapath/20x/part-00004.parquet",
5967
+ "data/TCGA-UCS/gigapath/20x/part-00005.parquet",
5968
+ "data/TCGA-UCS/gigapath/20x/part-00006.parquet",
5969
+ "data/TCGA-UCS/gigapath/20x/part-00007.parquet",
5970
+ "data/TCGA-UCS/gigapath/20x/part-00008.parquet",
5971
+ "data/TCGA-UCS/gigapath/20x/part-00009.parquet"
5972
+ ],
5973
+ "5x": [
5974
+ "data/TCGA-UCS/gigapath/5x/part-00000.parquet"
5975
+ ]
5976
+ },
5977
  "gigapath_slide": {
5978
  "20x": [
5979
  "data/TCGA-UCS/gigapath_slide/20x/part-00000.parquet"
 
6055
  "data/TCGA-UVM/ctranspath/5x/part-00000.parquet"
6056
  ]
6057
  },
6058
+ "gigapath": {
6059
+ "10x": [
6060
+ "data/TCGA-UVM/gigapath/10x/part-00000.parquet",
6061
+ "data/TCGA-UVM/gigapath/10x/part-00001.parquet"
6062
+ ],
6063
+ "20x": [
6064
+ "data/TCGA-UVM/gigapath/20x/part-00000.parquet",
6065
+ "data/TCGA-UVM/gigapath/20x/part-00001.parquet",
6066
+ "data/TCGA-UVM/gigapath/20x/part-00002.parquet",
6067
+ "data/TCGA-UVM/gigapath/20x/part-00003.parquet",
6068
+ "data/TCGA-UVM/gigapath/20x/part-00004.parquet",
6069
+ "data/TCGA-UVM/gigapath/20x/part-00005.parquet"
6070
+ ],
6071
+ "5x": [
6072
+ "data/TCGA-UVM/gigapath/5x/part-00000.parquet"
6073
+ ]
6074
+ },
6075
  "gigapath_slide": {
6076
  "20x": [
6077
  "data/TCGA-UVM/gigapath_slide/20x/part-00000.parquet"
metadata/release.json CHANGED
@@ -1,7 +1,7 @@
1
  {
2
  "schema_version": 1,
3
  "dataset_version": "v0.1.0-tcga-partial",
4
- "created_utc": "2026-09-30T18:32:55.899269+00:00",
5
  "parent_revision": null,
6
  "changed_groups": [
7
  "TCGA-ACC/chief/10x",
@@ -11,6 +11,9 @@
11
  "TCGA-ACC/ctranspath/10x",
12
  "TCGA-ACC/ctranspath/20x",
13
  "TCGA-ACC/ctranspath/5x",
 
 
 
14
  "TCGA-ACC/gigapath_slide/20x",
15
  "TCGA-ACC/titan/20x",
16
  "TCGA-ACC/uni_v1/10x",
@@ -26,6 +29,9 @@
26
  "TCGA-BLCA/ctranspath/10x",
27
  "TCGA-BLCA/ctranspath/20x",
28
  "TCGA-BLCA/ctranspath/5x",
 
 
 
29
  "TCGA-BLCA/gigapath_slide/20x",
30
  "TCGA-BLCA/titan/20x",
31
  "TCGA-BLCA/uni_v1/10x",
@@ -41,6 +47,9 @@
41
  "TCGA-BRCA/ctranspath/10x",
42
  "TCGA-BRCA/ctranspath/20x",
43
  "TCGA-BRCA/ctranspath/5x",
 
 
 
44
  "TCGA-BRCA/gigapath_slide/20x",
45
  "TCGA-BRCA/titan/20x",
46
  "TCGA-BRCA/uni_v1/10x",
@@ -56,6 +65,9 @@
56
  "TCGA-CESC/ctranspath/10x",
57
  "TCGA-CESC/ctranspath/20x",
58
  "TCGA-CESC/ctranspath/5x",
 
 
 
59
  "TCGA-CESC/gigapath_slide/20x",
60
  "TCGA-CESC/titan/20x",
61
  "TCGA-CESC/uni_v1/10x",
@@ -71,6 +83,9 @@
71
  "TCGA-CHOL/ctranspath/10x",
72
  "TCGA-CHOL/ctranspath/20x",
73
  "TCGA-CHOL/ctranspath/5x",
 
 
 
74
  "TCGA-CHOL/gigapath_slide/20x",
75
  "TCGA-CHOL/titan/20x",
76
  "TCGA-CHOL/uni_v1/10x",
@@ -86,6 +101,9 @@
86
  "TCGA-COAD/ctranspath/10x",
87
  "TCGA-COAD/ctranspath/20x",
88
  "TCGA-COAD/ctranspath/5x",
 
 
 
89
  "TCGA-COAD/gigapath_slide/20x",
90
  "TCGA-COAD/titan/20x",
91
  "TCGA-COAD/uni_v1/10x",
@@ -101,6 +119,9 @@
101
  "TCGA-DLBC/ctranspath/10x",
102
  "TCGA-DLBC/ctranspath/20x",
103
  "TCGA-DLBC/ctranspath/5x",
 
 
 
104
  "TCGA-DLBC/gigapath_slide/20x",
105
  "TCGA-DLBC/titan/20x",
106
  "TCGA-DLBC/uni_v1/10x",
@@ -116,6 +137,9 @@
116
  "TCGA-ESCA/ctranspath/10x",
117
  "TCGA-ESCA/ctranspath/20x",
118
  "TCGA-ESCA/ctranspath/5x",
 
 
 
119
  "TCGA-ESCA/gigapath_slide/20x",
120
  "TCGA-ESCA/titan/20x",
121
  "TCGA-ESCA/uni_v1/10x",
@@ -131,6 +155,9 @@
131
  "TCGA-GBM/ctranspath/10x",
132
  "TCGA-GBM/ctranspath/20x",
133
  "TCGA-GBM/ctranspath/5x",
 
 
 
134
  "TCGA-GBM/gigapath_slide/20x",
135
  "TCGA-GBM/titan/20x",
136
  "TCGA-GBM/uni_v1/10x",
@@ -146,6 +173,9 @@
146
  "TCGA-HNSC/ctranspath/10x",
147
  "TCGA-HNSC/ctranspath/20x",
148
  "TCGA-HNSC/ctranspath/5x",
 
 
 
149
  "TCGA-HNSC/gigapath_slide/20x",
150
  "TCGA-HNSC/titan/20x",
151
  "TCGA-HNSC/uni_v1/10x",
@@ -161,6 +191,9 @@
161
  "TCGA-KICH/ctranspath/10x",
162
  "TCGA-KICH/ctranspath/20x",
163
  "TCGA-KICH/ctranspath/5x",
 
 
 
164
  "TCGA-KICH/gigapath_slide/20x",
165
  "TCGA-KICH/titan/20x",
166
  "TCGA-KICH/uni_v1/10x",
@@ -176,6 +209,9 @@
176
  "TCGA-KIRC/ctranspath/10x",
177
  "TCGA-KIRC/ctranspath/20x",
178
  "TCGA-KIRC/ctranspath/5x",
 
 
 
179
  "TCGA-KIRC/gigapath_slide/20x",
180
  "TCGA-KIRC/titan/20x",
181
  "TCGA-KIRC/uni_v1/10x",
@@ -191,6 +227,9 @@
191
  "TCGA-KIRP/ctranspath/10x",
192
  "TCGA-KIRP/ctranspath/20x",
193
  "TCGA-KIRP/ctranspath/5x",
 
 
 
194
  "TCGA-KIRP/gigapath_slide/20x",
195
  "TCGA-KIRP/titan/20x",
196
  "TCGA-KIRP/uni_v1/10x",
@@ -206,6 +245,9 @@
206
  "TCGA-LGG/ctranspath/10x",
207
  "TCGA-LGG/ctranspath/20x",
208
  "TCGA-LGG/ctranspath/5x",
 
 
 
209
  "TCGA-LGG/gigapath_slide/20x",
210
  "TCGA-LGG/titan/20x",
211
  "TCGA-LGG/uni_v1/10x",
@@ -221,6 +263,9 @@
221
  "TCGA-LIHC/ctranspath/10x",
222
  "TCGA-LIHC/ctranspath/20x",
223
  "TCGA-LIHC/ctranspath/5x",
 
 
 
224
  "TCGA-LIHC/gigapath_slide/20x",
225
  "TCGA-LIHC/titan/20x",
226
  "TCGA-LIHC/uni_v1/10x",
@@ -236,6 +281,9 @@
236
  "TCGA-LUAD/ctranspath/10x",
237
  "TCGA-LUAD/ctranspath/20x",
238
  "TCGA-LUAD/ctranspath/5x",
 
 
 
239
  "TCGA-LUAD/gigapath_slide/20x",
240
  "TCGA-LUAD/titan/20x",
241
  "TCGA-LUAD/uni_v1/10x",
@@ -251,6 +299,9 @@
251
  "TCGA-LUSC/ctranspath/10x",
252
  "TCGA-LUSC/ctranspath/20x",
253
  "TCGA-LUSC/ctranspath/5x",
 
 
 
254
  "TCGA-LUSC/gigapath_slide/20x",
255
  "TCGA-LUSC/titan/20x",
256
  "TCGA-LUSC/uni_v1/10x",
@@ -266,6 +317,9 @@
266
  "TCGA-MESO/ctranspath/10x",
267
  "TCGA-MESO/ctranspath/20x",
268
  "TCGA-MESO/ctranspath/5x",
 
 
 
269
  "TCGA-MESO/gigapath_slide/20x",
270
  "TCGA-MESO/titan/20x",
271
  "TCGA-MESO/uni_v1/10x",
@@ -281,6 +335,9 @@
281
  "TCGA-OV/ctranspath/10x",
282
  "TCGA-OV/ctranspath/20x",
283
  "TCGA-OV/ctranspath/5x",
 
 
 
284
  "TCGA-OV/gigapath_slide/20x",
285
  "TCGA-OV/titan/20x",
286
  "TCGA-OV/uni_v1/10x",
@@ -296,6 +353,9 @@
296
  "TCGA-PAAD/ctranspath/10x",
297
  "TCGA-PAAD/ctranspath/20x",
298
  "TCGA-PAAD/ctranspath/5x",
 
 
 
299
  "TCGA-PAAD/gigapath_slide/20x",
300
  "TCGA-PAAD/titan/20x",
301
  "TCGA-PAAD/uni_v1/10x",
@@ -311,6 +371,9 @@
311
  "TCGA-PCPG/ctranspath/10x",
312
  "TCGA-PCPG/ctranspath/20x",
313
  "TCGA-PCPG/ctranspath/5x",
 
 
 
314
  "TCGA-PCPG/gigapath_slide/20x",
315
  "TCGA-PCPG/titan/20x",
316
  "TCGA-PCPG/uni_v1/10x",
@@ -326,6 +389,9 @@
326
  "TCGA-PRAD/ctranspath/10x",
327
  "TCGA-PRAD/ctranspath/20x",
328
  "TCGA-PRAD/ctranspath/5x",
 
 
 
329
  "TCGA-PRAD/gigapath_slide/20x",
330
  "TCGA-PRAD/titan/20x",
331
  "TCGA-PRAD/uni_v1/10x",
@@ -341,6 +407,9 @@
341
  "TCGA-READ/ctranspath/10x",
342
  "TCGA-READ/ctranspath/20x",
343
  "TCGA-READ/ctranspath/5x",
 
 
 
344
  "TCGA-READ/gigapath_slide/20x",
345
  "TCGA-READ/titan/20x",
346
  "TCGA-READ/uni_v1/10x",
@@ -356,6 +425,9 @@
356
  "TCGA-SARC/ctranspath/10x",
357
  "TCGA-SARC/ctranspath/20x",
358
  "TCGA-SARC/ctranspath/5x",
 
 
 
359
  "TCGA-SARC/gigapath_slide/20x",
360
  "TCGA-SARC/titan/20x",
361
  "TCGA-SARC/uni_v1/10x",
@@ -371,6 +443,9 @@
371
  "TCGA-SKCM/ctranspath/10x",
372
  "TCGA-SKCM/ctranspath/20x",
373
  "TCGA-SKCM/ctranspath/5x",
 
 
 
374
  "TCGA-SKCM/gigapath_slide/20x",
375
  "TCGA-SKCM/titan/20x",
376
  "TCGA-SKCM/uni_v1/10x",
@@ -386,6 +461,9 @@
386
  "TCGA-STAD/ctranspath/10x",
387
  "TCGA-STAD/ctranspath/20x",
388
  "TCGA-STAD/ctranspath/5x",
 
 
 
389
  "TCGA-STAD/gigapath_slide/20x",
390
  "TCGA-STAD/titan/20x",
391
  "TCGA-STAD/uni_v1/10x",
@@ -400,6 +478,9 @@
400
  "TCGA-TGCT/ctranspath/10x",
401
  "TCGA-TGCT/ctranspath/20x",
402
  "TCGA-TGCT/ctranspath/5x",
 
 
 
403
  "TCGA-TGCT/gigapath_slide/20x",
404
  "TCGA-TGCT/titan/20x",
405
  "TCGA-TGCT/uni_v1/10x",
@@ -415,6 +496,9 @@
415
  "TCGA-THCA/ctranspath/10x",
416
  "TCGA-THCA/ctranspath/20x",
417
  "TCGA-THCA/ctranspath/5x",
 
 
 
418
  "TCGA-THCA/gigapath_slide/20x",
419
  "TCGA-THCA/titan/20x",
420
  "TCGA-THCA/uni_v1/10x",
@@ -430,6 +514,9 @@
430
  "TCGA-THYM/ctranspath/10x",
431
  "TCGA-THYM/ctranspath/20x",
432
  "TCGA-THYM/ctranspath/5x",
 
 
 
433
  "TCGA-THYM/gigapath_slide/20x",
434
  "TCGA-THYM/titan/20x",
435
  "TCGA-THYM/uni_v1/10x",
@@ -445,6 +532,9 @@
445
  "TCGA-UCEC/ctranspath/10x",
446
  "TCGA-UCEC/ctranspath/20x",
447
  "TCGA-UCEC/ctranspath/5x",
 
 
 
448
  "TCGA-UCEC/gigapath_slide/20x",
449
  "TCGA-UCEC/titan/20x",
450
  "TCGA-UCEC/uni_v1/10x",
@@ -460,6 +550,9 @@
460
  "TCGA-UCS/ctranspath/10x",
461
  "TCGA-UCS/ctranspath/20x",
462
  "TCGA-UCS/ctranspath/5x",
 
 
 
463
  "TCGA-UCS/gigapath_slide/20x",
464
  "TCGA-UCS/titan/20x",
465
  "TCGA-UCS/uni_v1/10x",
@@ -475,6 +568,9 @@
475
  "TCGA-UVM/ctranspath/10x",
476
  "TCGA-UVM/ctranspath/20x",
477
  "TCGA-UVM/ctranspath/5x",
 
 
 
478
  "TCGA-UVM/gigapath_slide/20x",
479
  "TCGA-UVM/titan/20x",
480
  "TCGA-UVM/uni_v1/10x",
@@ -484,7 +580,7 @@
484
  "TCGA-UVM/uni_v2/20x",
485
  "TCGA-UVM/uni_v2/5x"
486
  ],
487
- "commit_message": "Upload TCGA partial batch: chief, conch_v1, ctranspath, gigapath_slide, titan, uni_v1, uni_v2",
488
  "builder_run_id": null,
489
  "source_hashes": {
490
  "location": "metadata/h5_validation.parquet",
 
1
  {
2
  "schema_version": 1,
3
  "dataset_version": "v0.1.0-tcga-partial",
4
+ "created_utc": "2026-09-30T18:36:31.653149+00:00",
5
  "parent_revision": null,
6
  "changed_groups": [
7
  "TCGA-ACC/chief/10x",
 
11
  "TCGA-ACC/ctranspath/10x",
12
  "TCGA-ACC/ctranspath/20x",
13
  "TCGA-ACC/ctranspath/5x",
14
+ "TCGA-ACC/gigapath/10x",
15
+ "TCGA-ACC/gigapath/20x",
16
+ "TCGA-ACC/gigapath/5x",
17
  "TCGA-ACC/gigapath_slide/20x",
18
  "TCGA-ACC/titan/20x",
19
  "TCGA-ACC/uni_v1/10x",
 
29
  "TCGA-BLCA/ctranspath/10x",
30
  "TCGA-BLCA/ctranspath/20x",
31
  "TCGA-BLCA/ctranspath/5x",
32
+ "TCGA-BLCA/gigapath/10x",
33
+ "TCGA-BLCA/gigapath/20x",
34
+ "TCGA-BLCA/gigapath/5x",
35
  "TCGA-BLCA/gigapath_slide/20x",
36
  "TCGA-BLCA/titan/20x",
37
  "TCGA-BLCA/uni_v1/10x",
 
47
  "TCGA-BRCA/ctranspath/10x",
48
  "TCGA-BRCA/ctranspath/20x",
49
  "TCGA-BRCA/ctranspath/5x",
50
+ "TCGA-BRCA/gigapath/10x",
51
+ "TCGA-BRCA/gigapath/20x",
52
+ "TCGA-BRCA/gigapath/5x",
53
  "TCGA-BRCA/gigapath_slide/20x",
54
  "TCGA-BRCA/titan/20x",
55
  "TCGA-BRCA/uni_v1/10x",
 
65
  "TCGA-CESC/ctranspath/10x",
66
  "TCGA-CESC/ctranspath/20x",
67
  "TCGA-CESC/ctranspath/5x",
68
+ "TCGA-CESC/gigapath/10x",
69
+ "TCGA-CESC/gigapath/20x",
70
+ "TCGA-CESC/gigapath/5x",
71
  "TCGA-CESC/gigapath_slide/20x",
72
  "TCGA-CESC/titan/20x",
73
  "TCGA-CESC/uni_v1/10x",
 
83
  "TCGA-CHOL/ctranspath/10x",
84
  "TCGA-CHOL/ctranspath/20x",
85
  "TCGA-CHOL/ctranspath/5x",
86
+ "TCGA-CHOL/gigapath/10x",
87
+ "TCGA-CHOL/gigapath/20x",
88
+ "TCGA-CHOL/gigapath/5x",
89
  "TCGA-CHOL/gigapath_slide/20x",
90
  "TCGA-CHOL/titan/20x",
91
  "TCGA-CHOL/uni_v1/10x",
 
101
  "TCGA-COAD/ctranspath/10x",
102
  "TCGA-COAD/ctranspath/20x",
103
  "TCGA-COAD/ctranspath/5x",
104
+ "TCGA-COAD/gigapath/10x",
105
+ "TCGA-COAD/gigapath/20x",
106
+ "TCGA-COAD/gigapath/5x",
107
  "TCGA-COAD/gigapath_slide/20x",
108
  "TCGA-COAD/titan/20x",
109
  "TCGA-COAD/uni_v1/10x",
 
119
  "TCGA-DLBC/ctranspath/10x",
120
  "TCGA-DLBC/ctranspath/20x",
121
  "TCGA-DLBC/ctranspath/5x",
122
+ "TCGA-DLBC/gigapath/10x",
123
+ "TCGA-DLBC/gigapath/20x",
124
+ "TCGA-DLBC/gigapath/5x",
125
  "TCGA-DLBC/gigapath_slide/20x",
126
  "TCGA-DLBC/titan/20x",
127
  "TCGA-DLBC/uni_v1/10x",
 
137
  "TCGA-ESCA/ctranspath/10x",
138
  "TCGA-ESCA/ctranspath/20x",
139
  "TCGA-ESCA/ctranspath/5x",
140
+ "TCGA-ESCA/gigapath/10x",
141
+ "TCGA-ESCA/gigapath/20x",
142
+ "TCGA-ESCA/gigapath/5x",
143
  "TCGA-ESCA/gigapath_slide/20x",
144
  "TCGA-ESCA/titan/20x",
145
  "TCGA-ESCA/uni_v1/10x",
 
155
  "TCGA-GBM/ctranspath/10x",
156
  "TCGA-GBM/ctranspath/20x",
157
  "TCGA-GBM/ctranspath/5x",
158
+ "TCGA-GBM/gigapath/10x",
159
+ "TCGA-GBM/gigapath/20x",
160
+ "TCGA-GBM/gigapath/5x",
161
  "TCGA-GBM/gigapath_slide/20x",
162
  "TCGA-GBM/titan/20x",
163
  "TCGA-GBM/uni_v1/10x",
 
173
  "TCGA-HNSC/ctranspath/10x",
174
  "TCGA-HNSC/ctranspath/20x",
175
  "TCGA-HNSC/ctranspath/5x",
176
+ "TCGA-HNSC/gigapath/10x",
177
+ "TCGA-HNSC/gigapath/20x",
178
+ "TCGA-HNSC/gigapath/5x",
179
  "TCGA-HNSC/gigapath_slide/20x",
180
  "TCGA-HNSC/titan/20x",
181
  "TCGA-HNSC/uni_v1/10x",
 
191
  "TCGA-KICH/ctranspath/10x",
192
  "TCGA-KICH/ctranspath/20x",
193
  "TCGA-KICH/ctranspath/5x",
194
+ "TCGA-KICH/gigapath/10x",
195
+ "TCGA-KICH/gigapath/20x",
196
+ "TCGA-KICH/gigapath/5x",
197
  "TCGA-KICH/gigapath_slide/20x",
198
  "TCGA-KICH/titan/20x",
199
  "TCGA-KICH/uni_v1/10x",
 
209
  "TCGA-KIRC/ctranspath/10x",
210
  "TCGA-KIRC/ctranspath/20x",
211
  "TCGA-KIRC/ctranspath/5x",
212
+ "TCGA-KIRC/gigapath/10x",
213
+ "TCGA-KIRC/gigapath/20x",
214
+ "TCGA-KIRC/gigapath/5x",
215
  "TCGA-KIRC/gigapath_slide/20x",
216
  "TCGA-KIRC/titan/20x",
217
  "TCGA-KIRC/uni_v1/10x",
 
227
  "TCGA-KIRP/ctranspath/10x",
228
  "TCGA-KIRP/ctranspath/20x",
229
  "TCGA-KIRP/ctranspath/5x",
230
+ "TCGA-KIRP/gigapath/10x",
231
+ "TCGA-KIRP/gigapath/20x",
232
+ "TCGA-KIRP/gigapath/5x",
233
  "TCGA-KIRP/gigapath_slide/20x",
234
  "TCGA-KIRP/titan/20x",
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  "TCGA-KIRP/uni_v1/10x",
 
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  "TCGA-LGG/ctranspath/10x",
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  "TCGA-LGG/ctranspath/20x",
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+ "TCGA-LGG/gigapath/20x",
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+ "TCGA-LGG/gigapath/5x",
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  "TCGA-LGG/gigapath_slide/20x",
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  "TCGA-LGG/titan/20x",
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  "TCGA-LGG/uni_v1/10x",
 
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+ "TCGA-LIHC/gigapath/20x",
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+ "TCGA-LIHC/gigapath/5x",
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  "TCGA-LIHC/gigapath_slide/20x",
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  "TCGA-LIHC/titan/20x",
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+ "TCGA-LUAD/gigapath/20x",
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+ "TCGA-LUAD/gigapath/5x",
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  "TCGA-LUAD/gigapath_slide/20x",
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  "TCGA-LUAD/titan/20x",
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  "TCGA-LUAD/uni_v1/10x",
 
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  "TCGA-LUSC/ctranspath/10x",
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  "TCGA-LUSC/ctranspath/20x",
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  "TCGA-LUSC/ctranspath/5x",
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+ "TCGA-LUSC/gigapath/10x",
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+ "TCGA-LUSC/gigapath/20x",
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+ "TCGA-LUSC/gigapath/5x",
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  "TCGA-LUSC/gigapath_slide/20x",
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  "TCGA-LUSC/titan/20x",
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  "TCGA-LUSC/uni_v1/10x",
 
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+ "TCGA-MESO/gigapath/20x",
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+ "TCGA-MESO/gigapath/5x",
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+ "TCGA-OV/gigapath/20x",
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+ "TCGA-OV/gigapath/5x",
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  "TCGA-PAAD/ctranspath/10x",
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  "TCGA-PAAD/ctranspath/20x",
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+ "TCGA-PAAD/gigapath/5x",
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  "TCGA-PCPG/ctranspath/10x",
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+ "TCGA-PCPG/gigapath/20x",
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+ "TCGA-PCPG/gigapath/5x",
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  "TCGA-PCPG/titan/20x",
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  "TCGA-PCPG/uni_v1/10x",
 
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  "TCGA-PRAD/ctranspath/10x",
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  "TCGA-PRAD/ctranspath/20x",
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  "TCGA-READ/ctranspath/10x",
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+ "TCGA-READ/gigapath/20x",
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  "TCGA-THYM/titan/20x",
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@@ -12134,11 +12247,11 @@
12134
  "magnification": "10x",
12135
  "group": "TCGA-PCPG/gigapath/10x",
12136
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12137
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12138
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12139
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12142
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12143
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12144
  "feature_types": [
@@ -12163,11 +12276,11 @@
12163
  "magnification": "20x",
12164
  "group": "TCGA-PCPG/gigapath/20x",
12165
  "status": "local_ready",
12166
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12167
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12168
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12169
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12170
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12171
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12172
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12173
  "feature_types": [
@@ -12192,11 +12305,11 @@
12192
  "magnification": "5x",
12193
  "group": "TCGA-PRAD/gigapath/5x",
12194
  "status": "local_ready",
12195
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12196
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12197
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12198
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12199
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12200
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12201
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12202
  "feature_types": [
@@ -12221,11 +12334,11 @@
12221
  "magnification": "10x",
12222
  "group": "TCGA-PRAD/gigapath/10x",
12223
  "status": "local_ready",
12224
- "uploaded": false,
12225
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12226
- "uploaded_revision": null,
12227
- "uploaded_commit": null,
12228
- "last_upload_attempt_utc": null,
12229
  "exclusion_reason": null,
12230
  "quarantine": null,
12231
  "feature_types": [
@@ -12250,11 +12363,11 @@
12250
  "magnification": "20x",
12251
  "group": "TCGA-PRAD/gigapath/20x",
12252
  "status": "local_ready",
12253
- "uploaded": false,
12254
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12255
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12256
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12257
- "last_upload_attempt_utc": null,
12258
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12259
  "quarantine": null,
12260
  "feature_types": [
@@ -12279,11 +12392,11 @@
12279
  "magnification": "5x",
12280
  "group": "TCGA-READ/gigapath/5x",
12281
  "status": "local_ready",
12282
- "uploaded": false,
12283
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12284
- "uploaded_revision": null,
12285
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12286
- "last_upload_attempt_utc": null,
12287
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12288
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12289
  "feature_types": [
@@ -12308,11 +12421,11 @@
12308
  "magnification": "10x",
12309
  "group": "TCGA-READ/gigapath/10x",
12310
  "status": "local_ready",
12311
- "uploaded": false,
12312
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12313
- "uploaded_revision": null,
12314
- "uploaded_commit": null,
12315
- "last_upload_attempt_utc": null,
12316
  "exclusion_reason": null,
12317
  "quarantine": null,
12318
  "feature_types": [
@@ -12337,11 +12450,11 @@
12337
  "magnification": "20x",
12338
  "group": "TCGA-READ/gigapath/20x",
12339
  "status": "local_ready",
12340
- "uploaded": false,
12341
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12342
- "uploaded_revision": null,
12343
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12344
- "last_upload_attempt_utc": null,
12345
  "exclusion_reason": null,
12346
  "quarantine": null,
12347
  "feature_types": [
@@ -12366,11 +12479,11 @@
12366
  "magnification": "5x",
12367
  "group": "TCGA-SARC/gigapath/5x",
12368
  "status": "local_ready",
12369
- "uploaded": false,
12370
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12371
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12372
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12373
- "last_upload_attempt_utc": null,
12374
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12375
  "quarantine": null,
12376
  "feature_types": [
@@ -12395,11 +12508,11 @@
12395
  "magnification": "10x",
12396
  "group": "TCGA-SARC/gigapath/10x",
12397
  "status": "local_ready",
12398
- "uploaded": false,
12399
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12400
- "uploaded_revision": null,
12401
- "uploaded_commit": null,
12402
- "last_upload_attempt_utc": null,
12403
  "exclusion_reason": null,
12404
  "quarantine": null,
12405
  "feature_types": [
@@ -12424,11 +12537,11 @@
12424
  "magnification": "20x",
12425
  "group": "TCGA-SARC/gigapath/20x",
12426
  "status": "local_ready",
12427
- "uploaded": false,
12428
- "upload_job_id": null,
12429
- "uploaded_revision": null,
12430
- "uploaded_commit": null,
12431
- "last_upload_attempt_utc": null,
12432
  "exclusion_reason": null,
12433
  "quarantine": null,
12434
  "feature_types": [
@@ -12453,11 +12566,11 @@
12453
  "magnification": "5x",
12454
  "group": "TCGA-SKCM/gigapath/5x",
12455
  "status": "local_ready",
12456
- "uploaded": false,
12457
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12458
- "uploaded_revision": null,
12459
- "uploaded_commit": null,
12460
- "last_upload_attempt_utc": null,
12461
  "exclusion_reason": null,
12462
  "quarantine": null,
12463
  "feature_types": [
@@ -12482,11 +12595,11 @@
12482
  "magnification": "10x",
12483
  "group": "TCGA-SKCM/gigapath/10x",
12484
  "status": "local_ready",
12485
- "uploaded": false,
12486
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12487
- "uploaded_revision": null,
12488
- "uploaded_commit": null,
12489
- "last_upload_attempt_utc": null,
12490
  "exclusion_reason": null,
12491
  "quarantine": null,
12492
  "feature_types": [
@@ -12511,11 +12624,11 @@
12511
  "magnification": "20x",
12512
  "group": "TCGA-SKCM/gigapath/20x",
12513
  "status": "local_ready",
12514
- "uploaded": false,
12515
- "upload_job_id": null,
12516
- "uploaded_revision": null,
12517
- "uploaded_commit": null,
12518
- "last_upload_attempt_utc": null,
12519
  "exclusion_reason": null,
12520
  "quarantine": null,
12521
  "feature_types": [
@@ -12540,11 +12653,11 @@
12540
  "magnification": "5x",
12541
  "group": "TCGA-STAD/gigapath/5x",
12542
  "status": "local_ready",
12543
- "uploaded": false,
12544
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12545
- "uploaded_revision": null,
12546
- "uploaded_commit": null,
12547
- "last_upload_attempt_utc": null,
12548
  "exclusion_reason": null,
12549
  "quarantine": null,
12550
  "feature_types": [
@@ -12569,11 +12682,11 @@
12569
  "magnification": "10x",
12570
  "group": "TCGA-STAD/gigapath/10x",
12571
  "status": "local_ready",
12572
- "uploaded": false,
12573
- "upload_job_id": null,
12574
- "uploaded_revision": null,
12575
- "uploaded_commit": null,
12576
- "last_upload_attempt_utc": null,
12577
  "exclusion_reason": null,
12578
  "quarantine": null,
12579
  "feature_types": [
@@ -12598,11 +12711,11 @@
12598
  "magnification": "20x",
12599
  "group": "TCGA-STAD/gigapath/20x",
12600
  "status": "local_ready",
12601
- "uploaded": false,
12602
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12603
- "uploaded_revision": null,
12604
- "uploaded_commit": null,
12605
- "last_upload_attempt_utc": null,
12606
  "exclusion_reason": null,
12607
  "quarantine": null,
12608
  "feature_types": [
@@ -12627,11 +12740,11 @@
12627
  "magnification": "5x",
12628
  "group": "TCGA-TGCT/gigapath/5x",
12629
  "status": "local_ready",
12630
- "uploaded": false,
12631
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12632
- "uploaded_revision": null,
12633
- "uploaded_commit": null,
12634
- "last_upload_attempt_utc": null,
12635
  "exclusion_reason": null,
12636
  "quarantine": null,
12637
  "feature_types": [
@@ -12656,11 +12769,11 @@
12656
  "magnification": "10x",
12657
  "group": "TCGA-TGCT/gigapath/10x",
12658
  "status": "local_ready",
12659
- "uploaded": false,
12660
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12661
- "uploaded_revision": null,
12662
- "uploaded_commit": null,
12663
- "last_upload_attempt_utc": null,
12664
  "exclusion_reason": null,
12665
  "quarantine": null,
12666
  "feature_types": [
@@ -12685,11 +12798,11 @@
12685
  "magnification": "20x",
12686
  "group": "TCGA-TGCT/gigapath/20x",
12687
  "status": "local_ready",
12688
- "uploaded": false,
12689
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12690
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12691
- "uploaded_commit": null,
12692
- "last_upload_attempt_utc": null,
12693
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12694
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12695
  "feature_types": [
@@ -12714,11 +12827,11 @@
12714
  "magnification": "5x",
12715
  "group": "TCGA-THCA/gigapath/5x",
12716
  "status": "local_ready",
12717
- "uploaded": false,
12718
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12719
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12720
- "uploaded_commit": null,
12721
- "last_upload_attempt_utc": null,
12722
  "exclusion_reason": null,
12723
  "quarantine": null,
12724
  "feature_types": [
@@ -12743,11 +12856,11 @@
12743
  "magnification": "10x",
12744
  "group": "TCGA-THCA/gigapath/10x",
12745
  "status": "local_ready",
12746
- "uploaded": false,
12747
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12748
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12749
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12750
- "last_upload_attempt_utc": null,
12751
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12752
  "quarantine": null,
12753
  "feature_types": [
@@ -12772,11 +12885,11 @@
12772
  "magnification": "20x",
12773
  "group": "TCGA-THCA/gigapath/20x",
12774
  "status": "local_ready",
12775
- "uploaded": false,
12776
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12777
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12778
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12779
- "last_upload_attempt_utc": null,
12780
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12781
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12782
  "feature_types": [
@@ -12801,11 +12914,11 @@
12801
  "magnification": "5x",
12802
  "group": "TCGA-THYM/gigapath/5x",
12803
  "status": "local_ready",
12804
- "uploaded": false,
12805
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12806
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12807
- "uploaded_commit": null,
12808
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12809
  "exclusion_reason": null,
12810
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12811
  "feature_types": [
@@ -12830,11 +12943,11 @@
12830
  "magnification": "10x",
12831
  "group": "TCGA-THYM/gigapath/10x",
12832
  "status": "local_ready",
12833
- "uploaded": false,
12834
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12835
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12836
- "uploaded_commit": null,
12837
- "last_upload_attempt_utc": null,
12838
  "exclusion_reason": null,
12839
  "quarantine": null,
12840
  "feature_types": [
@@ -12859,11 +12972,11 @@
12859
  "magnification": "20x",
12860
  "group": "TCGA-THYM/gigapath/20x",
12861
  "status": "local_ready",
12862
- "uploaded": false,
12863
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12864
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12865
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12866
- "last_upload_attempt_utc": null,
12867
  "exclusion_reason": null,
12868
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12869
  "feature_types": [
@@ -12888,11 +13001,11 @@
12888
  "magnification": "5x",
12889
  "group": "TCGA-UCEC/gigapath/5x",
12890
  "status": "local_ready",
12891
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12892
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12893
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12894
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12895
- "last_upload_attempt_utc": null,
12896
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12897
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12898
  "feature_types": [
@@ -12917,11 +13030,11 @@
12917
  "magnification": "10x",
12918
  "group": "TCGA-UCEC/gigapath/10x",
12919
  "status": "local_ready",
12920
- "uploaded": false,
12921
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12922
- "uploaded_revision": null,
12923
- "uploaded_commit": null,
12924
- "last_upload_attempt_utc": null,
12925
  "exclusion_reason": null,
12926
  "quarantine": null,
12927
  "feature_types": [
@@ -12946,11 +13059,11 @@
12946
  "magnification": "20x",
12947
  "group": "TCGA-UCEC/gigapath/20x",
12948
  "status": "local_ready",
12949
- "uploaded": false,
12950
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12951
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12952
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12953
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12954
  "exclusion_reason": null,
12955
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12956
  "feature_types": [
@@ -12975,11 +13088,11 @@
12975
  "magnification": "5x",
12976
  "group": "TCGA-UCS/gigapath/5x",
12977
  "status": "local_ready",
12978
- "uploaded": false,
12979
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12980
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12981
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12982
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12983
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12984
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12985
  "feature_types": [
@@ -13004,11 +13117,11 @@
13004
  "magnification": "10x",
13005
  "group": "TCGA-UCS/gigapath/10x",
13006
  "status": "local_ready",
13007
- "uploaded": false,
13008
- "upload_job_id": null,
13009
- "uploaded_revision": null,
13010
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13011
- "last_upload_attempt_utc": null,
13012
  "exclusion_reason": null,
13013
  "quarantine": null,
13014
  "feature_types": [
@@ -13033,11 +13146,11 @@
13033
  "magnification": "20x",
13034
  "group": "TCGA-UCS/gigapath/20x",
13035
  "status": "local_ready",
13036
- "uploaded": false,
13037
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13038
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13039
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13040
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13041
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13042
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13043
  "feature_types": [
@@ -13062,11 +13175,11 @@
13062
  "magnification": "5x",
13063
  "group": "TCGA-UVM/gigapath/5x",
13064
  "status": "local_ready",
13065
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13066
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13067
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13068
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13069
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13070
  "exclusion_reason": null,
13071
  "quarantine": null,
13072
  "feature_types": [
@@ -13091,11 +13204,11 @@
13091
  "magnification": "10x",
13092
  "group": "TCGA-UVM/gigapath/10x",
13093
  "status": "local_ready",
13094
- "uploaded": false,
13095
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13096
- "uploaded_revision": null,
13097
- "uploaded_commit": null,
13098
- "last_upload_attempt_utc": null,
13099
  "exclusion_reason": null,
13100
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13101
  "feature_types": [
@@ -13120,11 +13233,11 @@
13120
  "magnification": "20x",
13121
  "group": "TCGA-UVM/gigapath/20x",
13122
  "status": "local_ready",
13123
- "uploaded": false,
13124
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13125
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13126
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13127
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13128
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13129
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13130
  "feature_types": [
 
1
  {
2
  "schema_version": 1,
3
  "manifest_type": "tcga_atlas_upload_status",
4
+ "generated_utc": "2026-09-30T18:37:04.131359+00:00",
5
  "dataset_root": "/N/project/hancock/hf_tcga_atlas_test",
6
  "hub_target": "IUCompPath/TRACE",
7
  "omitted_models": {
 
152
  "not_available": 4
153
  },
154
  "local_ready_groups": 1146,
155
+ "uploaded_groups": 576,
156
  "failed_groups": 0,
157
  "excluded_groups": 2,
158
  "not_available_groups": 4,
 
163
  "local_ready_compressed_file_size_bytes": 13733315395411,
164
  "local_ready_estimated_uncompressed_bytes": 14810878690263,
165
  "validation_non_ok": 0,
166
+ "pending_upload_groups": 571,
167
  "upload_failed_groups": 0
168
  },
169
  "statistics": {
 
1080
  "shard_count": 31,
1081
  "row_count": 11411,
1082
  "compressed_file_size_bytes": 78967526
1083
+ },
1084
+ {
1085
+ "job_id": "8381190",
1086
+ "state": "completed",
1087
+ "submitted_utc": null,
1088
+ "completed_utc": "2026-09-30T18:37:04.131359+00:00",
1089
+ "revision": "main",
1090
+ "commit": "63a37d5b009e70ac5eba20c02275fcb7ec49d0a4",
1091
+ "models": [
1092
+ "gigapath"
1093
+ ],
1094
+ "groups": [
1095
+ "TCGA-ACC/gigapath/10x",
1096
+ "TCGA-ACC/gigapath/20x",
1097
+ "TCGA-ACC/gigapath/5x",
1098
+ "TCGA-BLCA/gigapath/10x",
1099
+ "TCGA-BLCA/gigapath/20x",
1100
+ "TCGA-BLCA/gigapath/5x",
1101
+ "TCGA-BRCA/gigapath/10x",
1102
+ "TCGA-BRCA/gigapath/20x",
1103
+ "TCGA-BRCA/gigapath/5x",
1104
+ "TCGA-CESC/gigapath/10x",
1105
+ "TCGA-CESC/gigapath/20x",
1106
+ "TCGA-CESC/gigapath/5x",
1107
+ "TCGA-CHOL/gigapath/10x",
1108
+ "TCGA-CHOL/gigapath/20x",
1109
+ "TCGA-CHOL/gigapath/5x",
1110
+ "TCGA-COAD/gigapath/10x",
1111
+ "TCGA-COAD/gigapath/20x",
1112
+ "TCGA-COAD/gigapath/5x",
1113
+ "TCGA-DLBC/gigapath/10x",
1114
+ "TCGA-DLBC/gigapath/20x",
1115
+ "TCGA-DLBC/gigapath/5x",
1116
+ "TCGA-ESCA/gigapath/10x",
1117
+ "TCGA-ESCA/gigapath/20x",
1118
+ "TCGA-ESCA/gigapath/5x",
1119
+ "TCGA-GBM/gigapath/10x",
1120
+ "TCGA-GBM/gigapath/20x",
1121
+ "TCGA-GBM/gigapath/5x",
1122
+ "TCGA-HNSC/gigapath/10x",
1123
+ "TCGA-HNSC/gigapath/20x",
1124
+ "TCGA-HNSC/gigapath/5x",
1125
+ "TCGA-KICH/gigapath/10x",
1126
+ "TCGA-KICH/gigapath/20x",
1127
+ "TCGA-KICH/gigapath/5x",
1128
+ "TCGA-KIRC/gigapath/10x",
1129
+ "TCGA-KIRC/gigapath/20x",
1130
+ "TCGA-KIRC/gigapath/5x",
1131
+ "TCGA-KIRP/gigapath/10x",
1132
+ "TCGA-KIRP/gigapath/20x",
1133
+ "TCGA-KIRP/gigapath/5x",
1134
+ "TCGA-LGG/gigapath/10x",
1135
+ "TCGA-LGG/gigapath/20x",
1136
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