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README.md

@@ -1,24 +1,23 @@
-# TCGA Pathology Atlas — verified partial release
+# TCGA Pathology Atlas — partial release
 
-This metadata repair restores the union metadata after the UNI data upload.
+This is a staged partial release for `IUCompPath/TRACE`.
 
 ## Included models
 
-- `conch_v1`
 - `gigapath_slide`
 - `titan`
+- `conch_v1`
 - `uni_v1`
 - `uni_v2`
+- `ctranspath`
 
 ## Scope
 
-- Groups: 352
-- Shards: 2,399
-- Embedding rows: 1,987,468
-- Compressed Parquet bytes: 2,168,955,754,103
-- Registry rows: 128,346
-- H5 validation rows: 128,346
+- Groups: 448
+- Shards: 3,070
+- Embedding rows: 2,850,024
+- Compressed Parquet bytes: 2,786,404,462,138
 - H5 validation failures: 0
 
-This release intentionally excludes midnight12k, resnet50, unavailable groups, and models pending metadata repair.
-See `metadata/upload_status.json` for the model × project × magnification ledger.
+This release intentionally excludes `midnight12k` and unavailable or quarantined source groups.
+See `metadata/upload_status.json` for the model × project × magnification upload ledger.

data/TCGA-PRAD/ctranspath/10x/part-00000.parquet

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data/TCGA-PRAD/ctranspath/10x/part-00001.parquet

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data/TCGA-PRAD/ctranspath/10x/part-00002.parquet

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data/TCGA-PRAD/ctranspath/10x/part-00003.parquet

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data/TCGA-PRAD/ctranspath/10x/part-00004.parquet

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+size 589704038

data/TCGA-PRAD/ctranspath/20x/part-00006.parquet

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data/TCGA-PRAD/ctranspath/20x/part-00010.parquet

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+size 994590848

data/TCGA-PRAD/ctranspath/5x/part-00000.parquet

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data/TCGA-PRAD/ctranspath/5x/part-00001.parquet

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metadata/h5_validation.parquet

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+size 11714861

metadata/nested_index.json

@@ -13,6 +13,32 @@
         "data/TCGA-ACC/conch_v1/5x/part-00000.parquet"
       ]
     },
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+        "data/TCGA-ACC/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-ACC/ctranspath/10x/part-00001.parquet",
+        "data/TCGA-ACC/ctranspath/10x/part-00002.parquet",
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+      ],
+      "5x": [
+        "data/TCGA-ACC/ctranspath/5x/part-00000.parquet"
+      ]
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@@ -115,6 +141,47 @@
         "data/TCGA-BLCA/conch_v1/5x/part-00000.parquet"
       ]
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+        "data/TCGA-BLCA/ctranspath/10x/part-00001.parquet",
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@@ -273,6 +340,78 @@
         "data/TCGA-BRCA/conch_v1/5x/part-00000.parquet"
       ]
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@@ -524,6 +663,27 @@
         "data/TCGA-CESC/conch_v1/5x/part-00000.parquet"
       ]
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+        "data/TCGA-CESC/ctranspath/10x/part-00001.parquet",
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@@ -605,6 +765,19 @@
         "data/TCGA-CHOL/conch_v1/5x/part-00000.parquet"
       ]
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+      ],
+      "20x": [
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+        "data/TCGA-CHOL/ctranspath/20x/part-00001.parquet",
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+      ],
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@@ -659,6 +832,32 @@
         "data/TCGA-COAD/conch_v1/5x/part-00000.parquet"
       ]
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@@ -757,6 +956,18 @@
         "data/TCGA-DLBC/conch_v1/5x/part-00000.parquet"
       ]
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@@ -805,6 +1016,23 @@
         "data/TCGA-ESCA/conch_v1/5x/part-00000.parquet"
       ]
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@@ -876,6 +1104,49 @@
         "data/TCGA-GBM/conch_v1/5x/part-00000.parquet"
       ]
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+        "data/TCGA-GBM/ctranspath/20x/part-00022.parquet",
+        "data/TCGA-GBM/ctranspath/20x/part-00023.parquet",
+        "data/TCGA-GBM/ctranspath/20x/part-00024.parquet",
+        "data/TCGA-GBM/ctranspath/20x/part-00025.parquet"
+      ],
+      "5x": [
+        "data/TCGA-GBM/ctranspath/5x/part-00000.parquet",
+        "data/TCGA-GBM/ctranspath/5x/part-00001.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-GBM/gigapath_slide/20x/part-00000.parquet"
@@ -1032,6 +1303,37 @@
         "data/TCGA-HNSC/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-HNSC/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-HNSC/ctranspath/10x/part-00001.parquet",
+        "data/TCGA-HNSC/ctranspath/10x/part-00002.parquet",
+        "data/TCGA-HNSC/ctranspath/10x/part-00003.parquet",
+        "data/TCGA-HNSC/ctranspath/10x/part-00004.parquet"
+      ],
+      "20x": [
+        "data/TCGA-HNSC/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-HNSC/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-HNSC/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-HNSC/ctranspath/20x/part-00003.parquet",
+        "data/TCGA-HNSC/ctranspath/20x/part-00004.parquet",
+        "data/TCGA-HNSC/ctranspath/20x/part-00005.parquet",
+        "data/TCGA-HNSC/ctranspath/20x/part-00006.parquet",
+        "data/TCGA-HNSC/ctranspath/20x/part-00007.parquet",
+        "data/TCGA-HNSC/ctranspath/20x/part-00008.parquet",
+        "data/TCGA-HNSC/ctranspath/20x/part-00009.parquet",
+        "data/TCGA-HNSC/ctranspath/20x/part-00010.parquet",
+        "data/TCGA-HNSC/ctranspath/20x/part-00011.parquet",
+        "data/TCGA-HNSC/ctranspath/20x/part-00012.parquet",
+        "data/TCGA-HNSC/ctranspath/20x/part-00013.parquet",
+        "data/TCGA-HNSC/ctranspath/20x/part-00014.parquet",
+        "data/TCGA-HNSC/ctranspath/20x/part-00015.parquet"
+      ],
+      "5x": [
+        "data/TCGA-HNSC/ctranspath/5x/part-00000.parquet",
+        "data/TCGA-HNSC/ctranspath/5x/part-00001.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-HNSC/gigapath_slide/20x/part-00000.parquet"
@@ -1145,6 +1447,23 @@
         "data/TCGA-KICH/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-KICH/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-KICH/ctranspath/10x/part-00001.parquet"
+      ],
+      "20x": [
+        "data/TCGA-KICH/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-KICH/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-KICH/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-KICH/ctranspath/20x/part-00003.parquet",
+        "data/TCGA-KICH/ctranspath/20x/part-00004.parquet",
+        "data/TCGA-KICH/ctranspath/20x/part-00005.parquet"
+      ],
+      "5x": [
+        "data/TCGA-KICH/ctranspath/5x/part-00000.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-KICH/gigapath_slide/20x/part-00000.parquet"
@@ -1214,6 +1533,45 @@
         "data/TCGA-KIRC/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-KIRC/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-KIRC/ctranspath/10x/part-00001.parquet",
+        "data/TCGA-KIRC/ctranspath/10x/part-00002.parquet",
+        "data/TCGA-KIRC/ctranspath/10x/part-00003.parquet",
+        "data/TCGA-KIRC/ctranspath/10x/part-00004.parquet",
+        "data/TCGA-KIRC/ctranspath/10x/part-00005.parquet"
+      ],
+      "20x": [
+        "data/TCGA-KIRC/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00003.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00004.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00005.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00006.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00007.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00008.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00009.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00010.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00011.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00012.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00013.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00014.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00015.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00016.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00017.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00018.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00019.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00020.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00021.parquet",
+        "data/TCGA-KIRC/ctranspath/20x/part-00022.parquet"
+      ],
+      "5x": [
+        "data/TCGA-KIRC/ctranspath/5x/part-00000.parquet",
+        "data/TCGA-KIRC/ctranspath/5x/part-00001.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-KIRC/gigapath_slide/20x/part-00000.parquet"
@@ -1359,6 +1717,31 @@
         "data/TCGA-KIRP/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-KIRP/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-KIRP/ctranspath/10x/part-00001.parquet",
+        "data/TCGA-KIRP/ctranspath/10x/part-00002.parquet",
+        "data/TCGA-KIRP/ctranspath/10x/part-00003.parquet"
+      ],
+      "20x": [
+        "data/TCGA-KIRP/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-KIRP/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-KIRP/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-KIRP/ctranspath/20x/part-00003.parquet",
+        "data/TCGA-KIRP/ctranspath/20x/part-00004.parquet",
+        "data/TCGA-KIRP/ctranspath/20x/part-00005.parquet",
+        "data/TCGA-KIRP/ctranspath/20x/part-00006.parquet",
+        "data/TCGA-KIRP/ctranspath/20x/part-00007.parquet",
+        "data/TCGA-KIRP/ctranspath/20x/part-00008.parquet",
+        "data/TCGA-KIRP/ctranspath/20x/part-00009.parquet",
+        "data/TCGA-KIRP/ctranspath/20x/part-00010.parquet",
+        "data/TCGA-KIRP/ctranspath/20x/part-00011.parquet"
+      ],
+      "5x": [
+        "data/TCGA-KIRP/ctranspath/5x/part-00000.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-KIRP/gigapath_slide/20x/part-00000.parquet"
@@ -1459,6 +1842,50 @@
         "data/TCGA-LGG/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-LGG/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-LGG/ctranspath/10x/part-00001.parquet",
+        "data/TCGA-LGG/ctranspath/10x/part-00002.parquet",
+        "data/TCGA-LGG/ctranspath/10x/part-00003.parquet",
+        "data/TCGA-LGG/ctranspath/10x/part-00004.parquet",
+        "data/TCGA-LGG/ctranspath/10x/part-00005.parquet",
+        "data/TCGA-LGG/ctranspath/10x/part-00006.parquet"
+      ],
+      "20x": [
+        "data/TCGA-LGG/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00003.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00004.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00005.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00006.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00007.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00008.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00009.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00010.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00011.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00012.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00013.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00014.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00015.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00016.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00017.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00018.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00019.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00020.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00021.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00022.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00023.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00024.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00025.parquet",
+        "data/TCGA-LGG/ctranspath/20x/part-00026.parquet"
+      ],
+      "5x": [
+        "data/TCGA-LGG/ctranspath/5x/part-00000.parquet",
+        "data/TCGA-LGG/ctranspath/5x/part-00001.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-LGG/gigapath_slide/20x/part-00000.parquet"
@@ -1620,6 +2047,36 @@
         "data/TCGA-LIHC/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-LIHC/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-LIHC/ctranspath/10x/part-00001.parquet",
+        "data/TCGA-LIHC/ctranspath/10x/part-00002.parquet",
+        "data/TCGA-LIHC/ctranspath/10x/part-00003.parquet"
+      ],
+      "20x": [
+        "data/TCGA-LIHC/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-LIHC/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-LIHC/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-LIHC/ctranspath/20x/part-00003.parquet",
+        "data/TCGA-LIHC/ctranspath/20x/part-00004.parquet",
+        "data/TCGA-LIHC/ctranspath/20x/part-00005.parquet",
+        "data/TCGA-LIHC/ctranspath/20x/part-00006.parquet",
+        "data/TCGA-LIHC/ctranspath/20x/part-00007.parquet",
+        "data/TCGA-LIHC/ctranspath/20x/part-00008.parquet",
+        "data/TCGA-LIHC/ctranspath/20x/part-00009.parquet",
+        "data/TCGA-LIHC/ctranspath/20x/part-00010.parquet",
+        "data/TCGA-LIHC/ctranspath/20x/part-00011.parquet",
+        "data/TCGA-LIHC/ctranspath/20x/part-00012.parquet",
+        "data/TCGA-LIHC/ctranspath/20x/part-00013.parquet",
+        "data/TCGA-LIHC/ctranspath/20x/part-00014.parquet",
+        "data/TCGA-LIHC/ctranspath/20x/part-00015.parquet"
+      ],
+      "5x": [
+        "data/TCGA-LIHC/ctranspath/5x/part-00000.parquet",
+        "data/TCGA-LIHC/ctranspath/5x/part-00001.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-LIHC/gigapath_slide/20x/part-00000.parquet"
@@ -1733,6 +2190,42 @@
         "data/TCGA-LUAD/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-LUAD/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-LUAD/ctranspath/10x/part-00001.parquet",
+        "data/TCGA-LUAD/ctranspath/10x/part-00002.parquet",
+        "data/TCGA-LUAD/ctranspath/10x/part-00003.parquet",
+        "data/TCGA-LUAD/ctranspath/10x/part-00004.parquet",
+        "data/TCGA-LUAD/ctranspath/10x/part-00005.parquet"
+      ],
+      "20x": [
+        "data/TCGA-LUAD/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-LUAD/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-LUAD/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-LUAD/ctranspath/20x/part-00003.parquet",
+        "data/TCGA-LUAD/ctranspath/20x/part-00004.parquet",
+        "data/TCGA-LUAD/ctranspath/20x/part-00005.parquet",
+        "data/TCGA-LUAD/ctranspath/20x/part-00006.parquet",
+        "data/TCGA-LUAD/ctranspath/20x/part-00007.parquet",
+        "data/TCGA-LUAD/ctranspath/20x/part-00008.parquet",
+        "data/TCGA-LUAD/ctranspath/20x/part-00009.parquet",
+        "data/TCGA-LUAD/ctranspath/20x/part-00010.parquet",
+        "data/TCGA-LUAD/ctranspath/20x/part-00011.parquet",
+        "data/TCGA-LUAD/ctranspath/20x/part-00012.parquet",
+        "data/TCGA-LUAD/ctranspath/20x/part-00013.parquet",
+        "data/TCGA-LUAD/ctranspath/20x/part-00014.parquet",
+        "data/TCGA-LUAD/ctranspath/20x/part-00015.parquet",
+        "data/TCGA-LUAD/ctranspath/20x/part-00016.parquet",
+        "data/TCGA-LUAD/ctranspath/20x/part-00017.parquet",
+        "data/TCGA-LUAD/ctranspath/20x/part-00018.parquet",
+        "data/TCGA-LUAD/ctranspath/20x/part-00019.parquet"
+      ],
+      "5x": [
+        "data/TCGA-LUAD/ctranspath/5x/part-00000.parquet",
+        "data/TCGA-LUAD/ctranspath/5x/part-00001.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-LUAD/gigapath_slide/20x/part-00000.parquet"
@@ -1863,6 +2356,41 @@
         "data/TCGA-LUSC/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-LUSC/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-LUSC/ctranspath/10x/part-00001.parquet",
+        "data/TCGA-LUSC/ctranspath/10x/part-00002.parquet",
+        "data/TCGA-LUSC/ctranspath/10x/part-00003.parquet",
+        "data/TCGA-LUSC/ctranspath/10x/part-00004.parquet"
+      ],
+      "20x": [
+        "data/TCGA-LUSC/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-LUSC/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-LUSC/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-LUSC/ctranspath/20x/part-00003.parquet",
+        "data/TCGA-LUSC/ctranspath/20x/part-00004.parquet",
+        "data/TCGA-LUSC/ctranspath/20x/part-00005.parquet",
+        "data/TCGA-LUSC/ctranspath/20x/part-00006.parquet",
+        "data/TCGA-LUSC/ctranspath/20x/part-00007.parquet",
+        "data/TCGA-LUSC/ctranspath/20x/part-00008.parquet",
+        "data/TCGA-LUSC/ctranspath/20x/part-00009.parquet",
+        "data/TCGA-LUSC/ctranspath/20x/part-00010.parquet",
+        "data/TCGA-LUSC/ctranspath/20x/part-00011.parquet",
+        "data/TCGA-LUSC/ctranspath/20x/part-00012.parquet",
+        "data/TCGA-LUSC/ctranspath/20x/part-00013.parquet",
+        "data/TCGA-LUSC/ctranspath/20x/part-00014.parquet",
+        "data/TCGA-LUSC/ctranspath/20x/part-00015.parquet",
+        "data/TCGA-LUSC/ctranspath/20x/part-00016.parquet",
+        "data/TCGA-LUSC/ctranspath/20x/part-00017.parquet",
+        "data/TCGA-LUSC/ctranspath/20x/part-00018.parquet",
+        "data/TCGA-LUSC/ctranspath/20x/part-00019.parquet"
+      ],
+      "5x": [
+        "data/TCGA-LUSC/ctranspath/5x/part-00000.parquet",
+        "data/TCGA-LUSC/ctranspath/5x/part-00001.parquet"
+      ]
+    },
     "gigapath_slide": {
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         "data/TCGA-LUSC/gigapath_slide/20x/part-00000.parquet"
@@ -1989,6 +2517,19 @@
         "data/TCGA-MESO/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-MESO/ctranspath/10x/part-00000.parquet"
+      ],
+      "20x": [
+        "data/TCGA-MESO/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-MESO/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-MESO/ctranspath/20x/part-00002.parquet"
+      ],
+      "5x": [
+        "data/TCGA-MESO/ctranspath/5x/part-00000.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-MESO/gigapath_slide/20x/part-00000.parquet"
@@ -2043,6 +2584,22 @@
         "data/TCGA-OV/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
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+        "data/TCGA-OV/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-OV/ctranspath/10x/part-00001.parquet"
+      ],
+      "20x": [
+        "data/TCGA-OV/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-OV/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-OV/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-OV/ctranspath/20x/part-00003.parquet",
+        "data/TCGA-OV/ctranspath/20x/part-00004.parquet"
+      ],
+      "5x": [
+        "data/TCGA-OV/ctranspath/5x/part-00000.parquet"
+      ]
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     "gigapath_slide": {
       "20x": [
         "data/TCGA-OV/gigapath_slide/20x/part-00000.parquet"
@@ -2107,6 +2664,27 @@
         "data/TCGA-PAAD/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
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+        "data/TCGA-PAAD/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-PAAD/ctranspath/10x/part-00001.parquet",
+        "data/TCGA-PAAD/ctranspath/10x/part-00002.parquet"
+      ],
+      "20x": [
+        "data/TCGA-PAAD/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-PAAD/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-PAAD/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-PAAD/ctranspath/20x/part-00003.parquet",
+        "data/TCGA-PAAD/ctranspath/20x/part-00004.parquet",
+        "data/TCGA-PAAD/ctranspath/20x/part-00005.parquet",
+        "data/TCGA-PAAD/ctranspath/20x/part-00006.parquet",
+        "data/TCGA-PAAD/ctranspath/20x/part-00007.parquet",
+        "data/TCGA-PAAD/ctranspath/20x/part-00008.parquet"
+      ],
+      "5x": [
+        "data/TCGA-PAAD/ctranspath/5x/part-00000.parquet"
+      ]
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     "gigapath_slide": {
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         "data/TCGA-PAAD/gigapath_slide/20x/part-00000.parquet"
@@ -2187,6 +2765,28 @@
         "data/TCGA-PCPG/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-PCPG/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-PCPG/ctranspath/10x/part-00001.parquet",
+        "data/TCGA-PCPG/ctranspath/10x/part-00002.parquet"
+      ],
+      "20x": [
+        "data/TCGA-PCPG/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-PCPG/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-PCPG/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-PCPG/ctranspath/20x/part-00003.parquet",
+        "data/TCGA-PCPG/ctranspath/20x/part-00004.parquet",
+        "data/TCGA-PCPG/ctranspath/20x/part-00005.parquet",
+        "data/TCGA-PCPG/ctranspath/20x/part-00006.parquet",
+        "data/TCGA-PCPG/ctranspath/20x/part-00007.parquet",
+        "data/TCGA-PCPG/ctranspath/20x/part-00008.parquet",
+        "data/TCGA-PCPG/ctranspath/20x/part-00009.parquet"
+      ],
+      "5x": [
+        "data/TCGA-PCPG/ctranspath/5x/part-00000.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-PCPG/gigapath_slide/20x/part-00000.parquet"
@@ -2273,6 +2873,39 @@
         "data/TCGA-PRAD/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-PRAD/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-PRAD/ctranspath/10x/part-00001.parquet",
+        "data/TCGA-PRAD/ctranspath/10x/part-00002.parquet",
+        "data/TCGA-PRAD/ctranspath/10x/part-00003.parquet",
+        "data/TCGA-PRAD/ctranspath/10x/part-00004.parquet"
+      ],
+      "20x": [
+        "data/TCGA-PRAD/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-PRAD/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-PRAD/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-PRAD/ctranspath/20x/part-00003.parquet",
+        "data/TCGA-PRAD/ctranspath/20x/part-00004.parquet",
+        "data/TCGA-PRAD/ctranspath/20x/part-00005.parquet",
+        "data/TCGA-PRAD/ctranspath/20x/part-00006.parquet",
+        "data/TCGA-PRAD/ctranspath/20x/part-00007.parquet",
+        "data/TCGA-PRAD/ctranspath/20x/part-00008.parquet",
+        "data/TCGA-PRAD/ctranspath/20x/part-00009.parquet",
+        "data/TCGA-PRAD/ctranspath/20x/part-00010.parquet",
+        "data/TCGA-PRAD/ctranspath/20x/part-00011.parquet",
+        "data/TCGA-PRAD/ctranspath/20x/part-00012.parquet",
+        "data/TCGA-PRAD/ctranspath/20x/part-00013.parquet",
+        "data/TCGA-PRAD/ctranspath/20x/part-00014.parquet",
+        "data/TCGA-PRAD/ctranspath/20x/part-00015.parquet",
+        "data/TCGA-PRAD/ctranspath/20x/part-00016.parquet",
+        "data/TCGA-PRAD/ctranspath/20x/part-00017.parquet"
+      ],
+      "5x": [
+        "data/TCGA-PRAD/ctranspath/5x/part-00000.parquet",
+        "data/TCGA-PRAD/ctranspath/5x/part-00001.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-PRAD/gigapath_slide/20x/part-00000.parquet"
@@ -2394,6 +3027,20 @@
         "data/TCGA-READ/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-READ/ctranspath/10x/part-00000.parquet"
+      ],
+      "20x": [
+        "data/TCGA-READ/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-READ/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-READ/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-READ/ctranspath/20x/part-00003.parquet"
+      ],
+      "5x": [
+        "data/TCGA-READ/ctranspath/5x/part-00000.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-READ/gigapath_slide/20x/part-00000.parquet"
@@ -2458,6 +3105,58 @@
         "data/TCGA-SARC/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-SARC/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-SARC/ctranspath/10x/part-00001.parquet",
+        "data/TCGA-SARC/ctranspath/10x/part-00002.parquet",
+        "data/TCGA-SARC/ctranspath/10x/part-00003.parquet",
+        "data/TCGA-SARC/ctranspath/10x/part-00004.parquet",
+        "data/TCGA-SARC/ctranspath/10x/part-00005.parquet",
+        "data/TCGA-SARC/ctranspath/10x/part-00006.parquet",
+        "data/TCGA-SARC/ctranspath/10x/part-00007.parquet",
+        "data/TCGA-SARC/ctranspath/10x/part-00008.parquet"
+      ],
+      "20x": [
+        "data/TCGA-SARC/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00003.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00004.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00005.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00006.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00007.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00008.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00009.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00010.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00011.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00012.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00013.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00014.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00015.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00016.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00017.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00018.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00019.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00020.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00021.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00022.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00023.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00024.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00025.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00026.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00027.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00028.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00029.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00030.parquet",
+        "data/TCGA-SARC/ctranspath/20x/part-00031.parquet"
+      ],
+      "5x": [
+        "data/TCGA-SARC/ctranspath/5x/part-00000.parquet",
+        "data/TCGA-SARC/ctranspath/5x/part-00001.parquet",
+        "data/TCGA-SARC/ctranspath/5x/part-00002.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-SARC/gigapath_slide/20x/part-00000.parquet"
@@ -2641,6 +3340,44 @@
         "data/TCGA-SKCM/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-SKCM/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-SKCM/ctranspath/10x/part-00001.parquet",
+        "data/TCGA-SKCM/ctranspath/10x/part-00002.parquet",
+        "data/TCGA-SKCM/ctranspath/10x/part-00003.parquet",
+        "data/TCGA-SKCM/ctranspath/10x/part-00004.parquet",
+        "data/TCGA-SKCM/ctranspath/10x/part-00005.parquet"
+      ],
+      "20x": [
+        "data/TCGA-SKCM/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00003.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00004.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00005.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00006.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00007.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00008.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00009.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00010.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00011.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00012.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00013.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00014.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00015.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00016.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00017.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00018.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00019.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00020.parquet",
+        "data/TCGA-SKCM/ctranspath/20x/part-00021.parquet"
+      ],
+      "5x": [
+        "data/TCGA-SKCM/ctranspath/5x/part-00000.parquet",
+        "data/TCGA-SKCM/ctranspath/5x/part-00001.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-SKCM/gigapath_slide/20x/part-00000.parquet"
@@ -2780,6 +3517,34 @@
         "data/TCGA-STAD/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-STAD/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-STAD/ctranspath/10x/part-00001.parquet",
+        "data/TCGA-STAD/ctranspath/10x/part-00002.parquet",
+        "data/TCGA-STAD/ctranspath/10x/part-00003.parquet"
+      ],
+      "20x": [
+        "data/TCGA-STAD/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-STAD/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-STAD/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-STAD/ctranspath/20x/part-00003.parquet",
+        "data/TCGA-STAD/ctranspath/20x/part-00004.parquet",
+        "data/TCGA-STAD/ctranspath/20x/part-00005.parquet",
+        "data/TCGA-STAD/ctranspath/20x/part-00006.parquet",
+        "data/TCGA-STAD/ctranspath/20x/part-00007.parquet",
+        "data/TCGA-STAD/ctranspath/20x/part-00008.parquet",
+        "data/TCGA-STAD/ctranspath/20x/part-00009.parquet",
+        "data/TCGA-STAD/ctranspath/20x/part-00010.parquet",
+        "data/TCGA-STAD/ctranspath/20x/part-00011.parquet",
+        "data/TCGA-STAD/ctranspath/20x/part-00012.parquet",
+        "data/TCGA-STAD/ctranspath/20x/part-00013.parquet",
+        "data/TCGA-STAD/ctranspath/20x/part-00014.parquet"
+      ],
+      "5x": [
+        "data/TCGA-STAD/ctranspath/5x/part-00000.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-STAD/gigapath_slide/20x/part-00000.parquet"
@@ -2887,6 +3652,32 @@
         "data/TCGA-TGCT/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-TGCT/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-TGCT/ctranspath/10x/part-00001.parquet",
+        "data/TCGA-TGCT/ctranspath/10x/part-00002.parquet",
+        "data/TCGA-TGCT/ctranspath/10x/part-00003.parquet"
+      ],
+      "20x": [
+        "data/TCGA-TGCT/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-TGCT/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-TGCT/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-TGCT/ctranspath/20x/part-00003.parquet",
+        "data/TCGA-TGCT/ctranspath/20x/part-00004.parquet",
+        "data/TCGA-TGCT/ctranspath/20x/part-00005.parquet",
+        "data/TCGA-TGCT/ctranspath/20x/part-00006.parquet",
+        "data/TCGA-TGCT/ctranspath/20x/part-00007.parquet",
+        "data/TCGA-TGCT/ctranspath/20x/part-00008.parquet",
+        "data/TCGA-TGCT/ctranspath/20x/part-00009.parquet",
+        "data/TCGA-TGCT/ctranspath/20x/part-00010.parquet",
+        "data/TCGA-TGCT/ctranspath/20x/part-00011.parquet",
+        "data/TCGA-TGCT/ctranspath/20x/part-00012.parquet"
+      ],
+      "5x": [
+        "data/TCGA-TGCT/ctranspath/5x/part-00000.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-TGCT/gigapath_slide/20x/part-00000.parquet"
@@ -2987,6 +3778,44 @@
         "data/TCGA-THCA/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-THCA/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-THCA/ctranspath/10x/part-00001.parquet",
+        "data/TCGA-THCA/ctranspath/10x/part-00002.parquet",
+        "data/TCGA-THCA/ctranspath/10x/part-00003.parquet",
+        "data/TCGA-THCA/ctranspath/10x/part-00004.parquet",
+        "data/TCGA-THCA/ctranspath/10x/part-00005.parquet"
+      ],
+      "20x": [
+        "data/TCGA-THCA/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00003.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00004.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00005.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00006.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00007.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00008.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00009.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00010.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00011.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00012.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00013.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00014.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00015.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00016.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00017.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00018.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00019.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00020.parquet",
+        "data/TCGA-THCA/ctranspath/20x/part-00021.parquet"
+      ],
+      "5x": [
+        "data/TCGA-THCA/ctranspath/5x/part-00000.parquet",
+        "data/TCGA-THCA/ctranspath/5x/part-00001.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-THCA/gigapath_slide/20x/part-00000.parquet"
@@ -3125,6 +3954,28 @@
         "data/TCGA-THYM/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-THYM/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-THYM/ctranspath/10x/part-00001.parquet",
+        "data/TCGA-THYM/ctranspath/10x/part-00002.parquet"
+      ],
+      "20x": [
+        "data/TCGA-THYM/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-THYM/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-THYM/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-THYM/ctranspath/20x/part-00003.parquet",
+        "data/TCGA-THYM/ctranspath/20x/part-00004.parquet",
+        "data/TCGA-THYM/ctranspath/20x/part-00005.parquet",
+        "data/TCGA-THYM/ctranspath/20x/part-00006.parquet",
+        "data/TCGA-THYM/ctranspath/20x/part-00007.parquet",
+        "data/TCGA-THYM/ctranspath/20x/part-00008.parquet",
+        "data/TCGA-THYM/ctranspath/20x/part-00009.parquet"
+      ],
+      "5x": [
+        "data/TCGA-THYM/ctranspath/5x/part-00000.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-THYM/gigapath_slide/20x/part-00000.parquet"
@@ -3213,6 +4064,53 @@
         "data/TCGA-UCEC/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-UCEC/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-UCEC/ctranspath/10x/part-00001.parquet",
+        "data/TCGA-UCEC/ctranspath/10x/part-00002.parquet",
+        "data/TCGA-UCEC/ctranspath/10x/part-00003.parquet",
+        "data/TCGA-UCEC/ctranspath/10x/part-00004.parquet",
+        "data/TCGA-UCEC/ctranspath/10x/part-00005.parquet",
+        "data/TCGA-UCEC/ctranspath/10x/part-00006.parquet",
+        "data/TCGA-UCEC/ctranspath/10x/part-00007.parquet"
+      ],
+      "20x": [
+        "data/TCGA-UCEC/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00003.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00004.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00005.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00006.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00007.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00008.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00009.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00010.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00011.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00012.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00013.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00014.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00015.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00016.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00017.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00018.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00019.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00020.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00021.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00022.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00023.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00024.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00025.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00026.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00027.parquet",
+        "data/TCGA-UCEC/ctranspath/20x/part-00028.parquet"
+      ],
+      "5x": [
+        "data/TCGA-UCEC/ctranspath/5x/part-00000.parquet",
+        "data/TCGA-UCEC/ctranspath/5x/part-00001.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-UCEC/gigapath_slide/20x/part-00000.parquet"
@@ -3381,6 +4279,22 @@
         "data/TCGA-UCS/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-UCS/ctranspath/10x/part-00000.parquet",
+        "data/TCGA-UCS/ctranspath/10x/part-00001.parquet"
+      ],
+      "20x": [
+        "data/TCGA-UCS/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-UCS/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-UCS/ctranspath/20x/part-00002.parquet",
+        "data/TCGA-UCS/ctranspath/20x/part-00003.parquet",
+        "data/TCGA-UCS/ctranspath/20x/part-00004.parquet"
+      ],
+      "5x": [
+        "data/TCGA-UCS/ctranspath/5x/part-00000.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-UCS/gigapath_slide/20x/part-00000.parquet"
@@ -3444,6 +4358,19 @@
         "data/TCGA-UVM/conch_v1/5x/part-00000.parquet"
       ]
     },
+    "ctranspath": {
+      "10x": [
+        "data/TCGA-UVM/ctranspath/10x/part-00000.parquet"
+      ],
+      "20x": [
+        "data/TCGA-UVM/ctranspath/20x/part-00000.parquet",
+        "data/TCGA-UVM/ctranspath/20x/part-00001.parquet",
+        "data/TCGA-UVM/ctranspath/20x/part-00002.parquet"
+      ],
+      "5x": [
+        "data/TCGA-UVM/ctranspath/5x/part-00000.parquet"
+      ]
+    },
     "gigapath_slide": {
       "20x": [
         "data/TCGA-UVM/gigapath_slide/20x/part-00000.parquet"

metadata/release.json

@@ -1,12 +1,15 @@
 {
   "schema_version": 1,
   "dataset_version": "v0.1.0-tcga-partial",
-  "created_utc": "2026-09-30T03:19:51.347586+00:00",
+  "created_utc": "2026-09-30T03:27:44.003883+00:00",
   "parent_revision": null,
   "changed_groups": [
     "TCGA-ACC/conch_v1/10x",
     "TCGA-ACC/conch_v1/20x",
     "TCGA-ACC/conch_v1/5x",
+    "TCGA-ACC/ctranspath/10x",
+    "TCGA-ACC/ctranspath/20x",
+    "TCGA-ACC/ctranspath/5x",
     "TCGA-ACC/gigapath_slide/20x",
     "TCGA-ACC/titan/20x",
     "TCGA-ACC/uni_v1/10x",
@@ -18,6 +21,9 @@
     "TCGA-BLCA/conch_v1/10x",
     "TCGA-BLCA/conch_v1/20x",
     "TCGA-BLCA/conch_v1/5x",
+    "TCGA-BLCA/ctranspath/10x",
+    "TCGA-BLCA/ctranspath/20x",
+    "TCGA-BLCA/ctranspath/5x",
     "TCGA-BLCA/gigapath_slide/20x",
     "TCGA-BLCA/titan/20x",
     "TCGA-BLCA/uni_v1/10x",
@@ -29,6 +35,9 @@
     "TCGA-BRCA/conch_v1/10x",
     "TCGA-BRCA/conch_v1/20x",
     "TCGA-BRCA/conch_v1/5x",
+    "TCGA-BRCA/ctranspath/10x",
+    "TCGA-BRCA/ctranspath/20x",
+    "TCGA-BRCA/ctranspath/5x",
     "TCGA-BRCA/gigapath_slide/20x",
     "TCGA-BRCA/titan/20x",
     "TCGA-BRCA/uni_v1/10x",
@@ -40,6 +49,9 @@
     "TCGA-CESC/conch_v1/10x",
     "TCGA-CESC/conch_v1/20x",
     "TCGA-CESC/conch_v1/5x",
+    "TCGA-CESC/ctranspath/10x",
+    "TCGA-CESC/ctranspath/20x",
+    "TCGA-CESC/ctranspath/5x",
     "TCGA-CESC/gigapath_slide/20x",
     "TCGA-CESC/titan/20x",
     "TCGA-CESC/uni_v1/10x",
@@ -51,6 +63,9 @@
     "TCGA-CHOL/conch_v1/10x",
     "TCGA-CHOL/conch_v1/20x",
     "TCGA-CHOL/conch_v1/5x",
+    "TCGA-CHOL/ctranspath/10x",
+    "TCGA-CHOL/ctranspath/20x",
+    "TCGA-CHOL/ctranspath/5x",
     "TCGA-CHOL/gigapath_slide/20x",
     "TCGA-CHOL/titan/20x",
     "TCGA-CHOL/uni_v1/10x",
@@ -62,6 +77,9 @@
     "TCGA-COAD/conch_v1/10x",
     "TCGA-COAD/conch_v1/20x",
     "TCGA-COAD/conch_v1/5x",
+    "TCGA-COAD/ctranspath/10x",
+    "TCGA-COAD/ctranspath/20x",
+    "TCGA-COAD/ctranspath/5x",
     "TCGA-COAD/gigapath_slide/20x",
     "TCGA-COAD/titan/20x",
     "TCGA-COAD/uni_v1/10x",
@@ -73,6 +91,9 @@
     "TCGA-DLBC/conch_v1/10x",
     "TCGA-DLBC/conch_v1/20x",
     "TCGA-DLBC/conch_v1/5x",
+    "TCGA-DLBC/ctranspath/10x",
+    "TCGA-DLBC/ctranspath/20x",
+    "TCGA-DLBC/ctranspath/5x",
     "TCGA-DLBC/gigapath_slide/20x",
     "TCGA-DLBC/titan/20x",
     "TCGA-DLBC/uni_v1/10x",
@@ -84,6 +105,9 @@
     "TCGA-ESCA/conch_v1/10x",
     "TCGA-ESCA/conch_v1/20x",
     "TCGA-ESCA/conch_v1/5x",
+    "TCGA-ESCA/ctranspath/10x",
+    "TCGA-ESCA/ctranspath/20x",
+    "TCGA-ESCA/ctranspath/5x",
     "TCGA-ESCA/gigapath_slide/20x",
     "TCGA-ESCA/titan/20x",
     "TCGA-ESCA/uni_v1/10x",
@@ -95,6 +119,9 @@
     "TCGA-GBM/conch_v1/10x",
     "TCGA-GBM/conch_v1/20x",
     "TCGA-GBM/conch_v1/5x",
+    "TCGA-GBM/ctranspath/10x",
+    "TCGA-GBM/ctranspath/20x",
+    "TCGA-GBM/ctranspath/5x",
     "TCGA-GBM/gigapath_slide/20x",
     "TCGA-GBM/titan/20x",
     "TCGA-GBM/uni_v1/10x",
@@ -106,6 +133,9 @@
     "TCGA-HNSC/conch_v1/10x",
     "TCGA-HNSC/conch_v1/20x",
     "TCGA-HNSC/conch_v1/5x",
+    "TCGA-HNSC/ctranspath/10x",
+    "TCGA-HNSC/ctranspath/20x",
+    "TCGA-HNSC/ctranspath/5x",
     "TCGA-HNSC/gigapath_slide/20x",
     "TCGA-HNSC/titan/20x",
     "TCGA-HNSC/uni_v1/10x",
@@ -117,6 +147,9 @@
     "TCGA-KICH/conch_v1/10x",
     "TCGA-KICH/conch_v1/20x",
     "TCGA-KICH/conch_v1/5x",
+    "TCGA-KICH/ctranspath/10x",
+    "TCGA-KICH/ctranspath/20x",
+    "TCGA-KICH/ctranspath/5x",
     "TCGA-KICH/gigapath_slide/20x",
     "TCGA-KICH/titan/20x",
     "TCGA-KICH/uni_v1/10x",
@@ -128,6 +161,9 @@
     "TCGA-KIRC/conch_v1/10x",
     "TCGA-KIRC/conch_v1/20x",
     "TCGA-KIRC/conch_v1/5x",
+    "TCGA-KIRC/ctranspath/10x",
+    "TCGA-KIRC/ctranspath/20x",
+    "TCGA-KIRC/ctranspath/5x",
     "TCGA-KIRC/gigapath_slide/20x",
     "TCGA-KIRC/titan/20x",
     "TCGA-KIRC/uni_v1/10x",
@@ -139,6 +175,9 @@
     "TCGA-KIRP/conch_v1/10x",
     "TCGA-KIRP/conch_v1/20x",
     "TCGA-KIRP/conch_v1/5x",
+    "TCGA-KIRP/ctranspath/10x",
+    "TCGA-KIRP/ctranspath/20x",
+    "TCGA-KIRP/ctranspath/5x",
     "TCGA-KIRP/gigapath_slide/20x",
     "TCGA-KIRP/titan/20x",
     "TCGA-KIRP/uni_v1/10x",
@@ -150,6 +189,9 @@
     "TCGA-LGG/conch_v1/10x",
     "TCGA-LGG/conch_v1/20x",
     "TCGA-LGG/conch_v1/5x",
+    "TCGA-LGG/ctranspath/10x",
+    "TCGA-LGG/ctranspath/20x",
+    "TCGA-LGG/ctranspath/5x",
     "TCGA-LGG/gigapath_slide/20x",
     "TCGA-LGG/titan/20x",
     "TCGA-LGG/uni_v1/10x",
@@ -161,6 +203,9 @@
     "TCGA-LIHC/conch_v1/10x",
     "TCGA-LIHC/conch_v1/20x",
     "TCGA-LIHC/conch_v1/5x",
+    "TCGA-LIHC/ctranspath/10x",
+    "TCGA-LIHC/ctranspath/20x",
+    "TCGA-LIHC/ctranspath/5x",
     "TCGA-LIHC/gigapath_slide/20x",
     "TCGA-LIHC/titan/20x",
     "TCGA-LIHC/uni_v1/10x",
@@ -172,6 +217,9 @@
     "TCGA-LUAD/conch_v1/10x",
     "TCGA-LUAD/conch_v1/20x",
     "TCGA-LUAD/conch_v1/5x",
+    "TCGA-LUAD/ctranspath/10x",
+    "TCGA-LUAD/ctranspath/20x",
+    "TCGA-LUAD/ctranspath/5x",
     "TCGA-LUAD/gigapath_slide/20x",
     "TCGA-LUAD/titan/20x",
     "TCGA-LUAD/uni_v1/10x",
@@ -183,6 +231,9 @@
     "TCGA-LUSC/conch_v1/10x",
     "TCGA-LUSC/conch_v1/20x",
     "TCGA-LUSC/conch_v1/5x",
+    "TCGA-LUSC/ctranspath/10x",
+    "TCGA-LUSC/ctranspath/20x",
+    "TCGA-LUSC/ctranspath/5x",
     "TCGA-LUSC/gigapath_slide/20x",
     "TCGA-LUSC/titan/20x",
     "TCGA-LUSC/uni_v1/10x",
@@ -194,6 +245,9 @@
     "TCGA-MESO/conch_v1/10x",
     "TCGA-MESO/conch_v1/20x",
     "TCGA-MESO/conch_v1/5x",
+    "TCGA-MESO/ctranspath/10x",
+    "TCGA-MESO/ctranspath/20x",
+    "TCGA-MESO/ctranspath/5x",
     "TCGA-MESO/gigapath_slide/20x",
     "TCGA-MESO/titan/20x",
     "TCGA-MESO/uni_v1/10x",
@@ -205,6 +259,9 @@
     "TCGA-OV/conch_v1/10x",
     "TCGA-OV/conch_v1/20x",
     "TCGA-OV/conch_v1/5x",
+    "TCGA-OV/ctranspath/10x",
+    "TCGA-OV/ctranspath/20x",
+    "TCGA-OV/ctranspath/5x",
     "TCGA-OV/gigapath_slide/20x",
     "TCGA-OV/titan/20x",
     "TCGA-OV/uni_v1/10x",
@@ -216,6 +273,9 @@
     "TCGA-PAAD/conch_v1/10x",
     "TCGA-PAAD/conch_v1/20x",
     "TCGA-PAAD/conch_v1/5x",
+    "TCGA-PAAD/ctranspath/10x",
+    "TCGA-PAAD/ctranspath/20x",
+    "TCGA-PAAD/ctranspath/5x",
     "TCGA-PAAD/gigapath_slide/20x",
     "TCGA-PAAD/titan/20x",
     "TCGA-PAAD/uni_v1/10x",
@@ -227,6 +287,9 @@
     "TCGA-PCPG/conch_v1/10x",
     "TCGA-PCPG/conch_v1/20x",
     "TCGA-PCPG/conch_v1/5x",
+    "TCGA-PCPG/ctranspath/10x",
+    "TCGA-PCPG/ctranspath/20x",
+    "TCGA-PCPG/ctranspath/5x",
     "TCGA-PCPG/gigapath_slide/20x",
     "TCGA-PCPG/titan/20x",
     "TCGA-PCPG/uni_v1/10x",
@@ -238,6 +301,9 @@
     "TCGA-PRAD/conch_v1/10x",
     "TCGA-PRAD/conch_v1/20x",
     "TCGA-PRAD/conch_v1/5x",
+    "TCGA-PRAD/ctranspath/10x",
+    "TCGA-PRAD/ctranspath/20x",
+    "TCGA-PRAD/ctranspath/5x",
     "TCGA-PRAD/gigapath_slide/20x",
     "TCGA-PRAD/titan/20x",
     "TCGA-PRAD/uni_v1/10x",
@@ -249,6 +315,9 @@
     "TCGA-READ/conch_v1/10x",
     "TCGA-READ/conch_v1/20x",
     "TCGA-READ/conch_v1/5x",
+    "TCGA-READ/ctranspath/10x",
+    "TCGA-READ/ctranspath/20x",
+    "TCGA-READ/ctranspath/5x",
     "TCGA-READ/gigapath_slide/20x",
     "TCGA-READ/titan/20x",
     "TCGA-READ/uni_v1/10x",
@@ -260,6 +329,9 @@
     "TCGA-SARC/conch_v1/10x",
     "TCGA-SARC/conch_v1/20x",
     "TCGA-SARC/conch_v1/5x",
+    "TCGA-SARC/ctranspath/10x",
+    "TCGA-SARC/ctranspath/20x",
+    "TCGA-SARC/ctranspath/5x",
     "TCGA-SARC/gigapath_slide/20x",
     "TCGA-SARC/titan/20x",
     "TCGA-SARC/uni_v1/10x",
@@ -271,6 +343,9 @@
     "TCGA-SKCM/conch_v1/10x",
     "TCGA-SKCM/conch_v1/20x",
     "TCGA-SKCM/conch_v1/5x",
+    "TCGA-SKCM/ctranspath/10x",
+    "TCGA-SKCM/ctranspath/20x",
+    "TCGA-SKCM/ctranspath/5x",
     "TCGA-SKCM/gigapath_slide/20x",
     "TCGA-SKCM/titan/20x",
     "TCGA-SKCM/uni_v1/10x",
@@ -282,6 +357,9 @@
     "TCGA-STAD/conch_v1/10x",
     "TCGA-STAD/conch_v1/20x",
     "TCGA-STAD/conch_v1/5x",
+    "TCGA-STAD/ctranspath/10x",
+    "TCGA-STAD/ctranspath/20x",
+    "TCGA-STAD/ctranspath/5x",
     "TCGA-STAD/gigapath_slide/20x",
     "TCGA-STAD/titan/20x",
     "TCGA-STAD/uni_v1/10x",
@@ -293,6 +371,9 @@
     "TCGA-TGCT/conch_v1/10x",
     "TCGA-TGCT/conch_v1/20x",
     "TCGA-TGCT/conch_v1/5x",
+    "TCGA-TGCT/ctranspath/10x",
+    "TCGA-TGCT/ctranspath/20x",
+    "TCGA-TGCT/ctranspath/5x",
     "TCGA-TGCT/gigapath_slide/20x",
     "TCGA-TGCT/titan/20x",
     "TCGA-TGCT/uni_v1/10x",
@@ -304,6 +385,9 @@
     "TCGA-THCA/conch_v1/10x",
     "TCGA-THCA/conch_v1/20x",
     "TCGA-THCA/conch_v1/5x",
+    "TCGA-THCA/ctranspath/10x",
+    "TCGA-THCA/ctranspath/20x",
+    "TCGA-THCA/ctranspath/5x",
     "TCGA-THCA/gigapath_slide/20x",
     "TCGA-THCA/titan/20x",
     "TCGA-THCA/uni_v1/10x",
@@ -315,6 +399,9 @@
     "TCGA-THYM/conch_v1/10x",
     "TCGA-THYM/conch_v1/20x",
     "TCGA-THYM/conch_v1/5x",
+    "TCGA-THYM/ctranspath/10x",
+    "TCGA-THYM/ctranspath/20x",
+    "TCGA-THYM/ctranspath/5x",
     "TCGA-THYM/gigapath_slide/20x",
     "TCGA-THYM/titan/20x",
     "TCGA-THYM/uni_v1/10x",
@@ -326,6 +413,9 @@
     "TCGA-UCEC/conch_v1/10x",
     "TCGA-UCEC/conch_v1/20x",
     "TCGA-UCEC/conch_v1/5x",
+    "TCGA-UCEC/ctranspath/10x",
+    "TCGA-UCEC/ctranspath/20x",
+    "TCGA-UCEC/ctranspath/5x",
     "TCGA-UCEC/gigapath_slide/20x",
     "TCGA-UCEC/titan/20x",
     "TCGA-UCEC/uni_v1/10x",
@@ -337,6 +427,9 @@
     "TCGA-UCS/conch_v1/10x",
     "TCGA-UCS/conch_v1/20x",
     "TCGA-UCS/conch_v1/5x",
+    "TCGA-UCS/ctranspath/10x",
+    "TCGA-UCS/ctranspath/20x",
+    "TCGA-UCS/ctranspath/5x",
     "TCGA-UCS/gigapath_slide/20x",
     "TCGA-UCS/titan/20x",
     "TCGA-UCS/uni_v1/10x",
@@ -348,6 +441,9 @@
     "TCGA-UVM/conch_v1/10x",
     "TCGA-UVM/conch_v1/20x",
     "TCGA-UVM/conch_v1/5x",
+    "TCGA-UVM/ctranspath/10x",
+    "TCGA-UVM/ctranspath/20x",
+    "TCGA-UVM/ctranspath/5x",
     "TCGA-UVM/gigapath_slide/20x",
     "TCGA-UVM/titan/20x",
     "TCGA-UVM/uni_v1/10x",
@@ -357,10 +453,10 @@
     "TCGA-UVM/uni_v2/20x",
     "TCGA-UVM/uni_v2/5x"
   ],
-  "commit_message": "Repair union metadata after UNI upload",
+  "commit_message": "Upload TCGA partial batch: gigapath_slide, titan, conch_v1, uni_v1, uni_v2, ctranspath",
   "builder_run_id": null,
   "source_hashes": {
     "location": "metadata/h5_validation.parquet",
-    "description": "Source H5 fingerprints produced by the canonical incremental builder."
+    "description": "Source H5 fingerprints from the canonical incremental builder."
   }
 }

metadata/shard_manifest.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
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-size 59873
+oid sha256:48b4c6b475f0b07a96028d8f6404c42e814cae1950b3d5f49334b80d9cd7658e
+size 75701

metadata/slide_registry.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:8326b98a856fc4f5717dc8640449bb9ec32494ca550766195a52e28f2278f2be
-size 9655273
+oid sha256:3df3a52ce49d462c314744b4210c09b09d5f06ea0c61caeb52c2719709c56f6c
+size 11297951