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  1. README.md +5 -4
  2. data/TCGA-CESC/conch_v1/10x/part-00000.parquet +3 -0
  3. data/TCGA-CESC/conch_v1/20x/part-00000.parquet +3 -0
  4. data/TCGA-CESC/conch_v1/20x/part-00001.parquet +3 -0
  5. data/TCGA-CESC/conch_v1/5x/part-00000.parquet +3 -0
  6. data/TCGA-COAD/conch_v1/10x/part-00000.parquet +3 -0
  7. data/TCGA-COAD/conch_v1/20x/part-00000.parquet +3 -0
  8. data/TCGA-COAD/conch_v1/20x/part-00001.parquet +3 -0
  9. data/TCGA-COAD/conch_v1/20x/part-00002.parquet +3 -0
  10. data/TCGA-COAD/conch_v1/5x/part-00000.parquet +3 -0
  11. data/TCGA-KIRC/conch_v1/10x/part-00001.parquet +3 -0
  12. data/TCGA-KIRC/conch_v1/5x/part-00000.parquet +3 -0
  13. data/TCGA-OV/conch_v1/10x/part-00000.parquet +3 -0
  14. data/TCGA-OV/conch_v1/20x/part-00000.parquet +3 -0
  15. data/TCGA-OV/conch_v1/5x/part-00000.parquet +3 -0
  16. data/TCGA-PRAD/conch_v1/10x/part-00000.parquet +3 -0
  17. data/TCGA-PRAD/conch_v1/20x/part-00000.parquet +3 -0
  18. data/TCGA-PRAD/conch_v1/20x/part-00001.parquet +3 -0
  19. data/TCGA-PRAD/conch_v1/20x/part-00002.parquet +3 -0
  20. data/TCGA-PRAD/conch_v1/20x/part-00003.parquet +3 -0
  21. data/TCGA-PRAD/conch_v1/5x/part-00000.parquet +3 -0
  22. data/TCGA-READ/conch_v1/10x/part-00000.parquet +3 -0
  23. data/TCGA-READ/conch_v1/5x/part-00000.parquet +3 -0
  24. data/TCGA-UCEC/conch_v1/10x/part-00000.parquet +3 -0
  25. data/TCGA-UCEC/conch_v1/10x/part-00001.parquet +3 -0
  26. data/TCGA-UCEC/conch_v1/20x/part-00000.parquet +3 -0
  27. data/TCGA-UCEC/conch_v1/20x/part-00001.parquet +3 -0
  28. data/TCGA-UCEC/conch_v1/20x/part-00002.parquet +3 -0
  29. data/TCGA-UCEC/conch_v1/20x/part-00003.parquet +3 -0
  30. data/TCGA-UCEC/conch_v1/20x/part-00004.parquet +3 -0
  31. data/TCGA-UCEC/conch_v1/5x/part-00000.parquet +3 -0
  32. metadata/h5_validation.parquet +2 -2
  33. metadata/nested_index.json +425 -0
  34. metadata/release.json +98 -2
  35. metadata/shard_manifest.parquet +2 -2
  36. metadata/slide_registry.parquet +2 -2
  37. metadata/upload_status.json +2959 -150
README.md CHANGED
@@ -6,13 +6,14 @@ This is a staged partial release for `IUCompPath/TRACE`.
6
 
7
  - `gigapath_slide`
8
  - `titan`
 
9
 
10
  ## Scope
11
 
12
- - Groups: 64
13
- - Shards: 64
14
- - Embedding rows: 23,336
15
- - Compressed Parquet bytes: 152,218,294
16
  - H5 validation failures: 0
17
 
18
  This release intentionally excludes `midnight12k` and unavailable or quarantined source groups.
 
6
 
7
  - `gigapath_slide`
8
  - `titan`
9
+ - `conch_v1`
10
 
11
  ## Scope
12
 
13
+ - Groups: 160
14
+ - Shards: 233
15
+ - Embedding rows: 262,369
16
+ - Compressed Parquet bytes: 108,347,259,144
17
  - H5 validation failures: 0
18
 
19
  This release intentionally excludes `midnight12k` and unavailable or quarantined source groups.
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  "TCGA-SARC": {
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  "TCGA-SKCM": {
 
 
 
 
 
 
 
 
 
 
 
 
 
 
291
  "gigapath_slide": {
292
  "20x": [
293
  "data/TCGA-SKCM/gigapath_slide/20x/part-00000.parquet"
@@ -300,6 +635,19 @@
300
  }
301
  },
302
  "TCGA-STAD": {
 
 
 
 
 
 
 
 
 
 
 
 
 
303
  "gigapath_slide": {
304
  "20x": [
305
  "data/TCGA-STAD/gigapath_slide/20x/part-00000.parquet"
@@ -312,6 +660,19 @@
312
  }
313
  },
314
  "TCGA-TGCT": {
 
 
 
 
 
 
 
 
 
 
 
 
 
315
  "gigapath_slide": {
316
  "20x": [
317
  "data/TCGA-TGCT/gigapath_slide/20x/part-00000.parquet"
@@ -324,6 +685,20 @@
324
  }
325
  },
326
  "TCGA-THCA": {
 
 
 
 
 
 
 
 
 
 
 
 
 
 
327
  "gigapath_slide": {
328
  "20x": [
329
  "data/TCGA-THCA/gigapath_slide/20x/part-00000.parquet"
@@ -336,6 +711,18 @@
336
  }
337
  },
338
  "TCGA-THYM": {
 
 
 
 
 
 
 
 
 
 
 
 
339
  "gigapath_slide": {
340
  "20x": [
341
  "data/TCGA-THYM/gigapath_slide/20x/part-00000.parquet"
@@ -348,6 +735,22 @@
348
  }
349
  },
350
  "TCGA-UCEC": {
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
351
  "gigapath_slide": {
352
  "20x": [
353
  "data/TCGA-UCEC/gigapath_slide/20x/part-00000.parquet"
@@ -360,6 +763,17 @@
360
  }
361
  },
362
  "TCGA-UCS": {
 
 
 
 
 
 
 
 
 
 
 
363
  "gigapath_slide": {
364
  "20x": [
365
  "data/TCGA-UCS/gigapath_slide/20x/part-00000.parquet"
@@ -372,6 +786,17 @@
372
  }
373
  },
374
  "TCGA-UVM": {
 
 
 
 
 
 
 
 
 
 
 
375
  "gigapath_slide": {
376
  "20x": [
377
  "data/TCGA-UVM/gigapath_slide/20x/part-00000.parquet"
 
1
  {
2
  "TCGA-ACC": {
3
+ "conch_v1": {
4
+ "10x": [
5
+ "data/TCGA-ACC/conch_v1/10x/part-00000.parquet"
6
+ ],
7
+ "20x": [
8
+ "data/TCGA-ACC/conch_v1/20x/part-00000.parquet",
9
+ "data/TCGA-ACC/conch_v1/20x/part-00001.parquet",
10
+ "data/TCGA-ACC/conch_v1/20x/part-00002.parquet"
11
+ ],
12
+ "5x": [
13
+ "data/TCGA-ACC/conch_v1/5x/part-00000.parquet"
14
+ ]
15
+ },
16
  "gigapath_slide": {
17
  "20x": [
18
  "data/TCGA-ACC/gigapath_slide/20x/part-00000.parquet"
 
25
  }
26
  },
27
  "TCGA-BLCA": {
28
+ "conch_v1": {
29
+ "10x": [
30
+ "data/TCGA-BLCA/conch_v1/10x/part-00000.parquet",
31
+ "data/TCGA-BLCA/conch_v1/10x/part-00001.parquet"
32
+ ],
33
+ "20x": [
34
+ "data/TCGA-BLCA/conch_v1/20x/part-00000.parquet",
35
+ "data/TCGA-BLCA/conch_v1/20x/part-00001.parquet",
36
+ "data/TCGA-BLCA/conch_v1/20x/part-00002.parquet",
37
+ "data/TCGA-BLCA/conch_v1/20x/part-00003.parquet",
38
+ "data/TCGA-BLCA/conch_v1/20x/part-00004.parquet"
39
+ ],
40
+ "5x": [
41
+ "data/TCGA-BLCA/conch_v1/5x/part-00000.parquet"
42
+ ]
43
+ },
44
  "gigapath_slide": {
45
  "20x": [
46
  "data/TCGA-BLCA/gigapath_slide/20x/part-00000.parquet"
 
53
  }
54
  },
55
  "TCGA-BRCA": {
56
+ "conch_v1": {
57
+ "10x": [
58
+ "data/TCGA-BRCA/conch_v1/10x/part-00000.parquet",
59
+ "data/TCGA-BRCA/conch_v1/10x/part-00001.parquet",
60
+ "data/TCGA-BRCA/conch_v1/10x/part-00002.parquet"
61
+ ],
62
+ "20x": [
63
+ "data/TCGA-BRCA/conch_v1/20x/part-00000.parquet",
64
+ "data/TCGA-BRCA/conch_v1/20x/part-00001.parquet",
65
+ "data/TCGA-BRCA/conch_v1/20x/part-00002.parquet",
66
+ "data/TCGA-BRCA/conch_v1/20x/part-00003.parquet",
67
+ "data/TCGA-BRCA/conch_v1/20x/part-00004.parquet",
68
+ "data/TCGA-BRCA/conch_v1/20x/part-00005.parquet",
69
+ "data/TCGA-BRCA/conch_v1/20x/part-00006.parquet",
70
+ "data/TCGA-BRCA/conch_v1/20x/part-00007.parquet",
71
+ "data/TCGA-BRCA/conch_v1/20x/part-00008.parquet"
72
+ ],
73
+ "5x": [
74
+ "data/TCGA-BRCA/conch_v1/5x/part-00000.parquet"
75
+ ]
76
+ },
77
  "gigapath_slide": {
78
  "20x": [
79
  "data/TCGA-BRCA/gigapath_slide/20x/part-00000.parquet"
 
86
  }
87
  },
88
  "TCGA-CESC": {
89
+ "conch_v1": {
90
+ "10x": [
91
+ "data/TCGA-CESC/conch_v1/10x/part-00000.parquet"
92
+ ],
93
+ "20x": [
94
+ "data/TCGA-CESC/conch_v1/20x/part-00000.parquet",
95
+ "data/TCGA-CESC/conch_v1/20x/part-00001.parquet"
96
+ ],
97
+ "5x": [
98
+ "data/TCGA-CESC/conch_v1/5x/part-00000.parquet"
99
+ ]
100
+ },
101
  "gigapath_slide": {
102
  "20x": [
103
  "data/TCGA-CESC/gigapath_slide/20x/part-00000.parquet"
 
110
  }
111
  },
112
  "TCGA-CHOL": {
113
+ "conch_v1": {
114
+ "10x": [
115
+ "data/TCGA-CHOL/conch_v1/10x/part-00000.parquet"
116
+ ],
117
+ "20x": [
118
+ "data/TCGA-CHOL/conch_v1/20x/part-00000.parquet"
119
+ ],
120
+ "5x": [
121
+ "data/TCGA-CHOL/conch_v1/5x/part-00000.parquet"
122
+ ]
123
+ },
124
  "gigapath_slide": {
125
  "20x": [
126
  "data/TCGA-CHOL/gigapath_slide/20x/part-00000.parquet"
 
133
  }
134
  },
135
  "TCGA-COAD": {
136
+ "conch_v1": {
137
+ "10x": [
138
+ "data/TCGA-COAD/conch_v1/10x/part-00000.parquet"
139
+ ],
140
+ "20x": [
141
+ "data/TCGA-COAD/conch_v1/20x/part-00000.parquet",
142
+ "data/TCGA-COAD/conch_v1/20x/part-00001.parquet",
143
+ "data/TCGA-COAD/conch_v1/20x/part-00002.parquet"
144
+ ],
145
+ "5x": [
146
+ "data/TCGA-COAD/conch_v1/5x/part-00000.parquet"
147
+ ]
148
+ },
149
  "gigapath_slide": {
150
  "20x": [
151
  "data/TCGA-COAD/gigapath_slide/20x/part-00000.parquet"
 
158
  }
159
  },
160
  "TCGA-DLBC": {
161
+ "conch_v1": {
162
+ "10x": [
163
+ "data/TCGA-DLBC/conch_v1/10x/part-00000.parquet"
164
+ ],
165
+ "20x": [
166
+ "data/TCGA-DLBC/conch_v1/20x/part-00000.parquet"
167
+ ],
168
+ "5x": [
169
+ "data/TCGA-DLBC/conch_v1/5x/part-00000.parquet"
170
+ ]
171
+ },
172
  "gigapath_slide": {
173
  "20x": [
174
  "data/TCGA-DLBC/gigapath_slide/20x/part-00000.parquet"
 
181
  }
182
  },
183
  "TCGA-ESCA": {
184
+ "conch_v1": {
185
+ "10x": [
186
+ "data/TCGA-ESCA/conch_v1/10x/part-00000.parquet"
187
+ ],
188
+ "20x": [
189
+ "data/TCGA-ESCA/conch_v1/20x/part-00000.parquet"
190
+ ],
191
+ "5x": [
192
+ "data/TCGA-ESCA/conch_v1/5x/part-00000.parquet"
193
+ ]
194
+ },
195
  "gigapath_slide": {
196
  "20x": [
197
  "data/TCGA-ESCA/gigapath_slide/20x/part-00000.parquet"
 
204
  }
205
  },
206
  "TCGA-GBM": {
207
+ "conch_v1": {
208
+ "10x": [
209
+ "data/TCGA-GBM/conch_v1/10x/part-00000.parquet",
210
+ "data/TCGA-GBM/conch_v1/10x/part-00001.parquet"
211
+ ],
212
+ "20x": [
213
+ "data/TCGA-GBM/conch_v1/20x/part-00000.parquet",
214
+ "data/TCGA-GBM/conch_v1/20x/part-00001.parquet",
215
+ "data/TCGA-GBM/conch_v1/20x/part-00002.parquet",
216
+ "data/TCGA-GBM/conch_v1/20x/part-00003.parquet",
217
+ "data/TCGA-GBM/conch_v1/20x/part-00004.parquet"
218
+ ],
219
+ "5x": [
220
+ "data/TCGA-GBM/conch_v1/5x/part-00000.parquet"
221
+ ]
222
+ },
223
  "gigapath_slide": {
224
  "20x": [
225
  "data/TCGA-GBM/gigapath_slide/20x/part-00000.parquet"
 
232
  }
233
  },
234
  "TCGA-HNSC": {
235
+ "conch_v1": {
236
+ "10x": [
237
+ "data/TCGA-HNSC/conch_v1/10x/part-00000.parquet"
238
+ ],
239
+ "20x": [
240
+ "data/TCGA-HNSC/conch_v1/20x/part-00000.parquet",
241
+ "data/TCGA-HNSC/conch_v1/20x/part-00001.parquet",
242
+ "data/TCGA-HNSC/conch_v1/20x/part-00002.parquet"
243
+ ],
244
+ "5x": [
245
+ "data/TCGA-HNSC/conch_v1/5x/part-00000.parquet"
246
+ ]
247
+ },
248
  "gigapath_slide": {
249
  "20x": [
250
  "data/TCGA-HNSC/gigapath_slide/20x/part-00000.parquet"
 
257
  }
258
  },
259
  "TCGA-KICH": {
260
+ "conch_v1": {
261
+ "10x": [
262
+ "data/TCGA-KICH/conch_v1/10x/part-00000.parquet"
263
+ ],
264
+ "20x": [
265
+ "data/TCGA-KICH/conch_v1/20x/part-00000.parquet"
266
+ ],
267
+ "5x": [
268
+ "data/TCGA-KICH/conch_v1/5x/part-00000.parquet"
269
+ ]
270
+ },
271
  "gigapath_slide": {
272
  "20x": [
273
  "data/TCGA-KICH/gigapath_slide/20x/part-00000.parquet"
 
280
  }
281
  },
282
  "TCGA-KIRC": {
283
+ "conch_v1": {
284
+ "10x": [
285
+ "data/TCGA-KIRC/conch_v1/10x/part-00000.parquet",
286
+ "data/TCGA-KIRC/conch_v1/10x/part-00001.parquet"
287
+ ],
288
+ "20x": [
289
+ "data/TCGA-KIRC/conch_v1/20x/part-00000.parquet",
290
+ "data/TCGA-KIRC/conch_v1/20x/part-00001.parquet",
291
+ "data/TCGA-KIRC/conch_v1/20x/part-00002.parquet",
292
+ "data/TCGA-KIRC/conch_v1/20x/part-00003.parquet"
293
+ ],
294
+ "5x": [
295
+ "data/TCGA-KIRC/conch_v1/5x/part-00000.parquet"
296
+ ]
297
+ },
298
  "gigapath_slide": {
299
  "20x": [
300
  "data/TCGA-KIRC/gigapath_slide/20x/part-00000.parquet"
 
307
  }
308
  },
309
  "TCGA-KIRP": {
310
+ "conch_v1": {
311
+ "10x": [
312
+ "data/TCGA-KIRP/conch_v1/10x/part-00000.parquet"
313
+ ],
314
+ "20x": [
315
+ "data/TCGA-KIRP/conch_v1/20x/part-00000.parquet",
316
+ "data/TCGA-KIRP/conch_v1/20x/part-00001.parquet",
317
+ "data/TCGA-KIRP/conch_v1/20x/part-00002.parquet"
318
+ ],
319
+ "5x": [
320
+ "data/TCGA-KIRP/conch_v1/5x/part-00000.parquet"
321
+ ]
322
+ },
323
  "gigapath_slide": {
324
  "20x": [
325
  "data/TCGA-KIRP/gigapath_slide/20x/part-00000.parquet"
 
332
  }
333
  },
334
  "TCGA-LGG": {
335
+ "conch_v1": {
336
+ "10x": [
337
+ "data/TCGA-LGG/conch_v1/10x/part-00000.parquet",
338
+ "data/TCGA-LGG/conch_v1/10x/part-00001.parquet"
339
+ ],
340
+ "20x": [
341
+ "data/TCGA-LGG/conch_v1/20x/part-00000.parquet",
342
+ "data/TCGA-LGG/conch_v1/20x/part-00001.parquet",
343
+ "data/TCGA-LGG/conch_v1/20x/part-00002.parquet",
344
+ "data/TCGA-LGG/conch_v1/20x/part-00003.parquet",
345
+ "data/TCGA-LGG/conch_v1/20x/part-00004.parquet"
346
+ ],
347
+ "5x": [
348
+ "data/TCGA-LGG/conch_v1/5x/part-00000.parquet"
349
+ ]
350
+ },
351
  "gigapath_slide": {
352
  "20x": [
353
  "data/TCGA-LGG/gigapath_slide/20x/part-00000.parquet"
 
360
  }
361
  },
362
  "TCGA-LIHC": {
363
+ "conch_v1": {
364
+ "10x": [
365
+ "data/TCGA-LIHC/conch_v1/10x/part-00000.parquet"
366
+ ],
367
+ "20x": [
368
+ "data/TCGA-LIHC/conch_v1/20x/part-00000.parquet",
369
+ "data/TCGA-LIHC/conch_v1/20x/part-00001.parquet",
370
+ "data/TCGA-LIHC/conch_v1/20x/part-00002.parquet"
371
+ ],
372
+ "5x": [
373
+ "data/TCGA-LIHC/conch_v1/5x/part-00000.parquet"
374
+ ]
375
+ },
376
  "gigapath_slide": {
377
  "20x": [
378
  "data/TCGA-LIHC/gigapath_slide/20x/part-00000.parquet"
 
385
  }
386
  },
387
  "TCGA-LUAD": {
388
+ "conch_v1": {
389
+ "10x": [
390
+ "data/TCGA-LUAD/conch_v1/10x/part-00000.parquet"
391
+ ],
392
+ "20x": [
393
+ "data/TCGA-LUAD/conch_v1/20x/part-00000.parquet",
394
+ "data/TCGA-LUAD/conch_v1/20x/part-00001.parquet",
395
+ "data/TCGA-LUAD/conch_v1/20x/part-00002.parquet",
396
+ "data/TCGA-LUAD/conch_v1/20x/part-00003.parquet"
397
+ ],
398
+ "5x": [
399
+ "data/TCGA-LUAD/conch_v1/5x/part-00000.parquet"
400
+ ]
401
+ },
402
  "gigapath_slide": {
403
  "20x": [
404
  "data/TCGA-LUAD/gigapath_slide/20x/part-00000.parquet"
 
411
  }
412
  },
413
  "TCGA-LUSC": {
414
+ "conch_v1": {
415
+ "10x": [
416
+ "data/TCGA-LUSC/conch_v1/10x/part-00000.parquet"
417
+ ],
418
+ "20x": [
419
+ "data/TCGA-LUSC/conch_v1/20x/part-00000.parquet",
420
+ "data/TCGA-LUSC/conch_v1/20x/part-00001.parquet",
421
+ "data/TCGA-LUSC/conch_v1/20x/part-00002.parquet",
422
+ "data/TCGA-LUSC/conch_v1/20x/part-00003.parquet"
423
+ ],
424
+ "5x": [
425
+ "data/TCGA-LUSC/conch_v1/5x/part-00000.parquet"
426
+ ]
427
+ },
428
  "gigapath_slide": {
429
  "20x": [
430
  "data/TCGA-LUSC/gigapath_slide/20x/part-00000.parquet"
 
437
  }
438
  },
439
  "TCGA-MESO": {
440
+ "conch_v1": {
441
+ "10x": [
442
+ "data/TCGA-MESO/conch_v1/10x/part-00000.parquet"
443
+ ],
444
+ "20x": [
445
+ "data/TCGA-MESO/conch_v1/20x/part-00000.parquet"
446
+ ],
447
+ "5x": [
448
+ "data/TCGA-MESO/conch_v1/5x/part-00000.parquet"
449
+ ]
450
+ },
451
  "gigapath_slide": {
452
  "20x": [
453
  "data/TCGA-MESO/gigapath_slide/20x/part-00000.parquet"
 
460
  }
461
  },
462
  "TCGA-OV": {
463
+ "conch_v1": {
464
+ "10x": [
465
+ "data/TCGA-OV/conch_v1/10x/part-00000.parquet"
466
+ ],
467
+ "20x": [
468
+ "data/TCGA-OV/conch_v1/20x/part-00000.parquet"
469
+ ],
470
+ "5x": [
471
+ "data/TCGA-OV/conch_v1/5x/part-00000.parquet"
472
+ ]
473
+ },
474
  "gigapath_slide": {
475
  "20x": [
476
  "data/TCGA-OV/gigapath_slide/20x/part-00000.parquet"
 
483
  }
484
  },
485
  "TCGA-PAAD": {
486
+ "conch_v1": {
487
+ "10x": [
488
+ "data/TCGA-PAAD/conch_v1/10x/part-00000.parquet"
489
+ ],
490
+ "20x": [
491
+ "data/TCGA-PAAD/conch_v1/20x/part-00000.parquet",
492
+ "data/TCGA-PAAD/conch_v1/20x/part-00001.parquet"
493
+ ],
494
+ "5x": [
495
+ "data/TCGA-PAAD/conch_v1/5x/part-00000.parquet"
496
+ ]
497
+ },
498
  "gigapath_slide": {
499
  "20x": [
500
  "data/TCGA-PAAD/gigapath_slide/20x/part-00000.parquet"
 
507
  }
508
  },
509
  "TCGA-PCPG": {
510
+ "conch_v1": {
511
+ "10x": [
512
+ "data/TCGA-PCPG/conch_v1/10x/part-00000.parquet"
513
+ ],
514
+ "20x": [
515
+ "data/TCGA-PCPG/conch_v1/20x/part-00000.parquet",
516
+ "data/TCGA-PCPG/conch_v1/20x/part-00001.parquet"
517
+ ],
518
+ "5x": [
519
+ "data/TCGA-PCPG/conch_v1/5x/part-00000.parquet"
520
+ ]
521
+ },
522
  "gigapath_slide": {
523
  "20x": [
524
  "data/TCGA-PCPG/gigapath_slide/20x/part-00000.parquet"
 
531
  }
532
  },
533
  "TCGA-PRAD": {
534
+ "conch_v1": {
535
+ "10x": [
536
+ "data/TCGA-PRAD/conch_v1/10x/part-00000.parquet"
537
+ ],
538
+ "20x": [
539
+ "data/TCGA-PRAD/conch_v1/20x/part-00000.parquet",
540
+ "data/TCGA-PRAD/conch_v1/20x/part-00001.parquet",
541
+ "data/TCGA-PRAD/conch_v1/20x/part-00002.parquet",
542
+ "data/TCGA-PRAD/conch_v1/20x/part-00003.parquet"
543
+ ],
544
+ "5x": [
545
+ "data/TCGA-PRAD/conch_v1/5x/part-00000.parquet"
546
+ ]
547
+ },
548
  "gigapath_slide": {
549
  "20x": [
550
  "data/TCGA-PRAD/gigapath_slide/20x/part-00000.parquet"
 
557
  }
558
  },
559
  "TCGA-READ": {
560
+ "conch_v1": {
561
+ "10x": [
562
+ "data/TCGA-READ/conch_v1/10x/part-00000.parquet"
563
+ ],
564
+ "20x": [
565
+ "data/TCGA-READ/conch_v1/20x/part-00000.parquet"
566
+ ],
567
+ "5x": [
568
+ "data/TCGA-READ/conch_v1/5x/part-00000.parquet"
569
+ ]
570
+ },
571
  "gigapath_slide": {
572
  "20x": [
573
  "data/TCGA-READ/gigapath_slide/20x/part-00000.parquet"
 
580
  }
581
  },
582
  "TCGA-SARC": {
583
+ "conch_v1": {
584
+ "10x": [
585
+ "data/TCGA-SARC/conch_v1/10x/part-00000.parquet",
586
+ "data/TCGA-SARC/conch_v1/10x/part-00001.parquet"
587
+ ],
588
+ "20x": [
589
+ "data/TCGA-SARC/conch_v1/20x/part-00000.parquet",
590
+ "data/TCGA-SARC/conch_v1/20x/part-00001.parquet",
591
+ "data/TCGA-SARC/conch_v1/20x/part-00002.parquet",
592
+ "data/TCGA-SARC/conch_v1/20x/part-00003.parquet",
593
+ "data/TCGA-SARC/conch_v1/20x/part-00004.parquet",
594
+ "data/TCGA-SARC/conch_v1/20x/part-00005.parquet"
595
+ ],
596
+ "5x": [
597
+ "data/TCGA-SARC/conch_v1/5x/part-00000.parquet"
598
+ ]
599
+ },
600
  "gigapath_slide": {
601
  "20x": [
602
  "data/TCGA-SARC/gigapath_slide/20x/part-00000.parquet"
 
609
  }
610
  },
611
  "TCGA-SKCM": {
612
+ "conch_v1": {
613
+ "10x": [
614
+ "data/TCGA-SKCM/conch_v1/10x/part-00000.parquet"
615
+ ],
616
+ "20x": [
617
+ "data/TCGA-SKCM/conch_v1/20x/part-00000.parquet",
618
+ "data/TCGA-SKCM/conch_v1/20x/part-00001.parquet",
619
+ "data/TCGA-SKCM/conch_v1/20x/part-00002.parquet",
620
+ "data/TCGA-SKCM/conch_v1/20x/part-00003.parquet"
621
+ ],
622
+ "5x": [
623
+ "data/TCGA-SKCM/conch_v1/5x/part-00000.parquet"
624
+ ]
625
+ },
626
  "gigapath_slide": {
627
  "20x": [
628
  "data/TCGA-SKCM/gigapath_slide/20x/part-00000.parquet"
 
635
  }
636
  },
637
  "TCGA-STAD": {
638
+ "conch_v1": {
639
+ "10x": [
640
+ "data/TCGA-STAD/conch_v1/10x/part-00000.parquet"
641
+ ],
642
+ "20x": [
643
+ "data/TCGA-STAD/conch_v1/20x/part-00000.parquet",
644
+ "data/TCGA-STAD/conch_v1/20x/part-00001.parquet",
645
+ "data/TCGA-STAD/conch_v1/20x/part-00002.parquet"
646
+ ],
647
+ "5x": [
648
+ "data/TCGA-STAD/conch_v1/5x/part-00000.parquet"
649
+ ]
650
+ },
651
  "gigapath_slide": {
652
  "20x": [
653
  "data/TCGA-STAD/gigapath_slide/20x/part-00000.parquet"
 
660
  }
661
  },
662
  "TCGA-TGCT": {
663
+ "conch_v1": {
664
+ "10x": [
665
+ "data/TCGA-TGCT/conch_v1/10x/part-00000.parquet"
666
+ ],
667
+ "20x": [
668
+ "data/TCGA-TGCT/conch_v1/20x/part-00000.parquet",
669
+ "data/TCGA-TGCT/conch_v1/20x/part-00001.parquet",
670
+ "data/TCGA-TGCT/conch_v1/20x/part-00002.parquet"
671
+ ],
672
+ "5x": [
673
+ "data/TCGA-TGCT/conch_v1/5x/part-00000.parquet"
674
+ ]
675
+ },
676
  "gigapath_slide": {
677
  "20x": [
678
  "data/TCGA-TGCT/gigapath_slide/20x/part-00000.parquet"
 
685
  }
686
  },
687
  "TCGA-THCA": {
688
+ "conch_v1": {
689
+ "10x": [
690
+ "data/TCGA-THCA/conch_v1/10x/part-00000.parquet"
691
+ ],
692
+ "20x": [
693
+ "data/TCGA-THCA/conch_v1/20x/part-00000.parquet",
694
+ "data/TCGA-THCA/conch_v1/20x/part-00001.parquet",
695
+ "data/TCGA-THCA/conch_v1/20x/part-00002.parquet",
696
+ "data/TCGA-THCA/conch_v1/20x/part-00003.parquet"
697
+ ],
698
+ "5x": [
699
+ "data/TCGA-THCA/conch_v1/5x/part-00000.parquet"
700
+ ]
701
+ },
702
  "gigapath_slide": {
703
  "20x": [
704
  "data/TCGA-THCA/gigapath_slide/20x/part-00000.parquet"
 
711
  }
712
  },
713
  "TCGA-THYM": {
714
+ "conch_v1": {
715
+ "10x": [
716
+ "data/TCGA-THYM/conch_v1/10x/part-00000.parquet"
717
+ ],
718
+ "20x": [
719
+ "data/TCGA-THYM/conch_v1/20x/part-00000.parquet",
720
+ "data/TCGA-THYM/conch_v1/20x/part-00001.parquet"
721
+ ],
722
+ "5x": [
723
+ "data/TCGA-THYM/conch_v1/5x/part-00000.parquet"
724
+ ]
725
+ },
726
  "gigapath_slide": {
727
  "20x": [
728
  "data/TCGA-THYM/gigapath_slide/20x/part-00000.parquet"
 
735
  }
736
  },
737
  "TCGA-UCEC": {
738
+ "conch_v1": {
739
+ "10x": [
740
+ "data/TCGA-UCEC/conch_v1/10x/part-00000.parquet",
741
+ "data/TCGA-UCEC/conch_v1/10x/part-00001.parquet"
742
+ ],
743
+ "20x": [
744
+ "data/TCGA-UCEC/conch_v1/20x/part-00000.parquet",
745
+ "data/TCGA-UCEC/conch_v1/20x/part-00001.parquet",
746
+ "data/TCGA-UCEC/conch_v1/20x/part-00002.parquet",
747
+ "data/TCGA-UCEC/conch_v1/20x/part-00003.parquet",
748
+ "data/TCGA-UCEC/conch_v1/20x/part-00004.parquet"
749
+ ],
750
+ "5x": [
751
+ "data/TCGA-UCEC/conch_v1/5x/part-00000.parquet"
752
+ ]
753
+ },
754
  "gigapath_slide": {
755
  "20x": [
756
  "data/TCGA-UCEC/gigapath_slide/20x/part-00000.parquet"
 
763
  }
764
  },
765
  "TCGA-UCS": {
766
+ "conch_v1": {
767
+ "10x": [
768
+ "data/TCGA-UCS/conch_v1/10x/part-00000.parquet"
769
+ ],
770
+ "20x": [
771
+ "data/TCGA-UCS/conch_v1/20x/part-00000.parquet"
772
+ ],
773
+ "5x": [
774
+ "data/TCGA-UCS/conch_v1/5x/part-00000.parquet"
775
+ ]
776
+ },
777
  "gigapath_slide": {
778
  "20x": [
779
  "data/TCGA-UCS/gigapath_slide/20x/part-00000.parquet"
 
786
  }
787
  },
788
  "TCGA-UVM": {
789
+ "conch_v1": {
790
+ "10x": [
791
+ "data/TCGA-UVM/conch_v1/10x/part-00000.parquet"
792
+ ],
793
+ "20x": [
794
+ "data/TCGA-UVM/conch_v1/20x/part-00000.parquet"
795
+ ],
796
+ "5x": [
797
+ "data/TCGA-UVM/conch_v1/5x/part-00000.parquet"
798
+ ]
799
+ },
800
  "gigapath_slide": {
801
  "20x": [
802
  "data/TCGA-UVM/gigapath_slide/20x/part-00000.parquet"
metadata/release.json CHANGED
@@ -1,75 +1,171 @@
1
  {
2
  "schema_version": 1,
3
  "dataset_version": "v0.1.0-tcga-partial",
4
- "created_utc": "2026-09-29T21:15:45.837978+00:00",
5
  "parent_revision": null,
6
  "changed_groups": [
 
 
 
7
  "TCGA-ACC/gigapath_slide/20x",
8
  "TCGA-ACC/titan/20x",
 
 
 
9
  "TCGA-BLCA/gigapath_slide/20x",
10
  "TCGA-BLCA/titan/20x",
 
 
 
11
  "TCGA-BRCA/gigapath_slide/20x",
12
  "TCGA-BRCA/titan/20x",
 
 
 
13
  "TCGA-CESC/gigapath_slide/20x",
14
  "TCGA-CESC/titan/20x",
 
 
 
15
  "TCGA-CHOL/gigapath_slide/20x",
16
  "TCGA-CHOL/titan/20x",
 
 
 
17
  "TCGA-COAD/gigapath_slide/20x",
18
  "TCGA-COAD/titan/20x",
 
 
 
19
  "TCGA-DLBC/gigapath_slide/20x",
20
  "TCGA-DLBC/titan/20x",
 
 
 
21
  "TCGA-ESCA/gigapath_slide/20x",
22
  "TCGA-ESCA/titan/20x",
 
 
 
23
  "TCGA-GBM/gigapath_slide/20x",
24
  "TCGA-GBM/titan/20x",
 
 
 
25
  "TCGA-HNSC/gigapath_slide/20x",
26
  "TCGA-HNSC/titan/20x",
 
 
 
27
  "TCGA-KICH/gigapath_slide/20x",
28
  "TCGA-KICH/titan/20x",
 
 
 
29
  "TCGA-KIRC/gigapath_slide/20x",
30
  "TCGA-KIRC/titan/20x",
 
 
 
31
  "TCGA-KIRP/gigapath_slide/20x",
32
  "TCGA-KIRP/titan/20x",
 
 
 
33
  "TCGA-LGG/gigapath_slide/20x",
34
  "TCGA-LGG/titan/20x",
 
 
 
35
  "TCGA-LIHC/gigapath_slide/20x",
36
  "TCGA-LIHC/titan/20x",
 
 
 
37
  "TCGA-LUAD/gigapath_slide/20x",
38
  "TCGA-LUAD/titan/20x",
 
 
 
39
  "TCGA-LUSC/gigapath_slide/20x",
40
  "TCGA-LUSC/titan/20x",
 
 
 
41
  "TCGA-MESO/gigapath_slide/20x",
42
  "TCGA-MESO/titan/20x",
 
 
 
43
  "TCGA-OV/gigapath_slide/20x",
44
  "TCGA-OV/titan/20x",
 
 
 
45
  "TCGA-PAAD/gigapath_slide/20x",
46
  "TCGA-PAAD/titan/20x",
 
 
 
47
  "TCGA-PCPG/gigapath_slide/20x",
48
  "TCGA-PCPG/titan/20x",
 
 
 
49
  "TCGA-PRAD/gigapath_slide/20x",
50
  "TCGA-PRAD/titan/20x",
 
 
 
51
  "TCGA-READ/gigapath_slide/20x",
52
  "TCGA-READ/titan/20x",
 
 
 
53
  "TCGA-SARC/gigapath_slide/20x",
54
  "TCGA-SARC/titan/20x",
 
 
 
55
  "TCGA-SKCM/gigapath_slide/20x",
56
  "TCGA-SKCM/titan/20x",
 
 
 
57
  "TCGA-STAD/gigapath_slide/20x",
58
  "TCGA-STAD/titan/20x",
 
 
 
59
  "TCGA-TGCT/gigapath_slide/20x",
60
  "TCGA-TGCT/titan/20x",
 
 
 
61
  "TCGA-THCA/gigapath_slide/20x",
62
  "TCGA-THCA/titan/20x",
 
 
 
63
  "TCGA-THYM/gigapath_slide/20x",
64
  "TCGA-THYM/titan/20x",
 
 
 
65
  "TCGA-UCEC/gigapath_slide/20x",
66
  "TCGA-UCEC/titan/20x",
 
 
 
67
  "TCGA-UCS/gigapath_slide/20x",
68
  "TCGA-UCS/titan/20x",
 
 
 
69
  "TCGA-UVM/gigapath_slide/20x",
70
  "TCGA-UVM/titan/20x"
71
  ],
72
- "commit_message": "Upload TCGA partial batch: gigapath_slide, titan",
73
  "builder_run_id": null,
74
  "source_hashes": {
75
  "location": "metadata/h5_validation.parquet",
 
1
  {
2
  "schema_version": 1,
3
  "dataset_version": "v0.1.0-tcga-partial",
4
+ "created_utc": "2026-09-29T22:13:50.985868+00:00",
5
  "parent_revision": null,
6
  "changed_groups": [
7
+ "TCGA-ACC/conch_v1/10x",
8
+ "TCGA-ACC/conch_v1/20x",
9
+ "TCGA-ACC/conch_v1/5x",
10
  "TCGA-ACC/gigapath_slide/20x",
11
  "TCGA-ACC/titan/20x",
12
+ "TCGA-BLCA/conch_v1/10x",
13
+ "TCGA-BLCA/conch_v1/20x",
14
+ "TCGA-BLCA/conch_v1/5x",
15
  "TCGA-BLCA/gigapath_slide/20x",
16
  "TCGA-BLCA/titan/20x",
17
+ "TCGA-BRCA/conch_v1/10x",
18
+ "TCGA-BRCA/conch_v1/20x",
19
+ "TCGA-BRCA/conch_v1/5x",
20
  "TCGA-BRCA/gigapath_slide/20x",
21
  "TCGA-BRCA/titan/20x",
22
+ "TCGA-CESC/conch_v1/10x",
23
+ "TCGA-CESC/conch_v1/20x",
24
+ "TCGA-CESC/conch_v1/5x",
25
  "TCGA-CESC/gigapath_slide/20x",
26
  "TCGA-CESC/titan/20x",
27
+ "TCGA-CHOL/conch_v1/10x",
28
+ "TCGA-CHOL/conch_v1/20x",
29
+ "TCGA-CHOL/conch_v1/5x",
30
  "TCGA-CHOL/gigapath_slide/20x",
31
  "TCGA-CHOL/titan/20x",
32
+ "TCGA-COAD/conch_v1/10x",
33
+ "TCGA-COAD/conch_v1/20x",
34
+ "TCGA-COAD/conch_v1/5x",
35
  "TCGA-COAD/gigapath_slide/20x",
36
  "TCGA-COAD/titan/20x",
37
+ "TCGA-DLBC/conch_v1/10x",
38
+ "TCGA-DLBC/conch_v1/20x",
39
+ "TCGA-DLBC/conch_v1/5x",
40
  "TCGA-DLBC/gigapath_slide/20x",
41
  "TCGA-DLBC/titan/20x",
42
+ "TCGA-ESCA/conch_v1/10x",
43
+ "TCGA-ESCA/conch_v1/20x",
44
+ "TCGA-ESCA/conch_v1/5x",
45
  "TCGA-ESCA/gigapath_slide/20x",
46
  "TCGA-ESCA/titan/20x",
47
+ "TCGA-GBM/conch_v1/10x",
48
+ "TCGA-GBM/conch_v1/20x",
49
+ "TCGA-GBM/conch_v1/5x",
50
  "TCGA-GBM/gigapath_slide/20x",
51
  "TCGA-GBM/titan/20x",
52
+ "TCGA-HNSC/conch_v1/10x",
53
+ "TCGA-HNSC/conch_v1/20x",
54
+ "TCGA-HNSC/conch_v1/5x",
55
  "TCGA-HNSC/gigapath_slide/20x",
56
  "TCGA-HNSC/titan/20x",
57
+ "TCGA-KICH/conch_v1/10x",
58
+ "TCGA-KICH/conch_v1/20x",
59
+ "TCGA-KICH/conch_v1/5x",
60
  "TCGA-KICH/gigapath_slide/20x",
61
  "TCGA-KICH/titan/20x",
62
+ "TCGA-KIRC/conch_v1/10x",
63
+ "TCGA-KIRC/conch_v1/20x",
64
+ "TCGA-KIRC/conch_v1/5x",
65
  "TCGA-KIRC/gigapath_slide/20x",
66
  "TCGA-KIRC/titan/20x",
67
+ "TCGA-KIRP/conch_v1/10x",
68
+ "TCGA-KIRP/conch_v1/20x",
69
+ "TCGA-KIRP/conch_v1/5x",
70
  "TCGA-KIRP/gigapath_slide/20x",
71
  "TCGA-KIRP/titan/20x",
72
+ "TCGA-LGG/conch_v1/10x",
73
+ "TCGA-LGG/conch_v1/20x",
74
+ "TCGA-LGG/conch_v1/5x",
75
  "TCGA-LGG/gigapath_slide/20x",
76
  "TCGA-LGG/titan/20x",
77
+ "TCGA-LIHC/conch_v1/10x",
78
+ "TCGA-LIHC/conch_v1/20x",
79
+ "TCGA-LIHC/conch_v1/5x",
80
  "TCGA-LIHC/gigapath_slide/20x",
81
  "TCGA-LIHC/titan/20x",
82
+ "TCGA-LUAD/conch_v1/10x",
83
+ "TCGA-LUAD/conch_v1/20x",
84
+ "TCGA-LUAD/conch_v1/5x",
85
  "TCGA-LUAD/gigapath_slide/20x",
86
  "TCGA-LUAD/titan/20x",
87
+ "TCGA-LUSC/conch_v1/10x",
88
+ "TCGA-LUSC/conch_v1/20x",
89
+ "TCGA-LUSC/conch_v1/5x",
90
  "TCGA-LUSC/gigapath_slide/20x",
91
  "TCGA-LUSC/titan/20x",
92
+ "TCGA-MESO/conch_v1/10x",
93
+ "TCGA-MESO/conch_v1/20x",
94
+ "TCGA-MESO/conch_v1/5x",
95
  "TCGA-MESO/gigapath_slide/20x",
96
  "TCGA-MESO/titan/20x",
97
+ "TCGA-OV/conch_v1/10x",
98
+ "TCGA-OV/conch_v1/20x",
99
+ "TCGA-OV/conch_v1/5x",
100
  "TCGA-OV/gigapath_slide/20x",
101
  "TCGA-OV/titan/20x",
102
+ "TCGA-PAAD/conch_v1/10x",
103
+ "TCGA-PAAD/conch_v1/20x",
104
+ "TCGA-PAAD/conch_v1/5x",
105
  "TCGA-PAAD/gigapath_slide/20x",
106
  "TCGA-PAAD/titan/20x",
107
+ "TCGA-PCPG/conch_v1/10x",
108
+ "TCGA-PCPG/conch_v1/20x",
109
+ "TCGA-PCPG/conch_v1/5x",
110
  "TCGA-PCPG/gigapath_slide/20x",
111
  "TCGA-PCPG/titan/20x",
112
+ "TCGA-PRAD/conch_v1/10x",
113
+ "TCGA-PRAD/conch_v1/20x",
114
+ "TCGA-PRAD/conch_v1/5x",
115
  "TCGA-PRAD/gigapath_slide/20x",
116
  "TCGA-PRAD/titan/20x",
117
+ "TCGA-READ/conch_v1/10x",
118
+ "TCGA-READ/conch_v1/20x",
119
+ "TCGA-READ/conch_v1/5x",
120
  "TCGA-READ/gigapath_slide/20x",
121
  "TCGA-READ/titan/20x",
122
+ "TCGA-SARC/conch_v1/10x",
123
+ "TCGA-SARC/conch_v1/20x",
124
+ "TCGA-SARC/conch_v1/5x",
125
  "TCGA-SARC/gigapath_slide/20x",
126
  "TCGA-SARC/titan/20x",
127
+ "TCGA-SKCM/conch_v1/10x",
128
+ "TCGA-SKCM/conch_v1/20x",
129
+ "TCGA-SKCM/conch_v1/5x",
130
  "TCGA-SKCM/gigapath_slide/20x",
131
  "TCGA-SKCM/titan/20x",
132
+ "TCGA-STAD/conch_v1/10x",
133
+ "TCGA-STAD/conch_v1/20x",
134
+ "TCGA-STAD/conch_v1/5x",
135
  "TCGA-STAD/gigapath_slide/20x",
136
  "TCGA-STAD/titan/20x",
137
+ "TCGA-TGCT/conch_v1/10x",
138
+ "TCGA-TGCT/conch_v1/20x",
139
+ "TCGA-TGCT/conch_v1/5x",
140
  "TCGA-TGCT/gigapath_slide/20x",
141
  "TCGA-TGCT/titan/20x",
142
+ "TCGA-THCA/conch_v1/10x",
143
+ "TCGA-THCA/conch_v1/20x",
144
+ "TCGA-THCA/conch_v1/5x",
145
  "TCGA-THCA/gigapath_slide/20x",
146
  "TCGA-THCA/titan/20x",
147
+ "TCGA-THYM/conch_v1/10x",
148
+ "TCGA-THYM/conch_v1/20x",
149
+ "TCGA-THYM/conch_v1/5x",
150
  "TCGA-THYM/gigapath_slide/20x",
151
  "TCGA-THYM/titan/20x",
152
+ "TCGA-UCEC/conch_v1/10x",
153
+ "TCGA-UCEC/conch_v1/20x",
154
+ "TCGA-UCEC/conch_v1/5x",
155
  "TCGA-UCEC/gigapath_slide/20x",
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