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README.md
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- biology
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- mass-spectrometry
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- proteomics
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- de-novo-sequencing
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size_categories:
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- 1M<n<10M
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configs:
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## Overview
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Peptide-spectrum match (PSM) data assembled from 18 public PRIDE proteomics projects, partitioned by sequence identity into train, validation, and test splits for de novo peptide sequencing benchmarks.
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Curated by Jeroen Van Goey (j.vangoey@instadeep.com).
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## Dataset Details
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## Acknowledgements
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## Citation
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- biology
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- mass-spectrometry
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- proteomics
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- de-novo-peptide-sequencing
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size_categories:
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- 1M<n<10M
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configs:
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## Overview
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Peptide-spectrum match (PSM) data assembled from 18 public PRIDE proteomics projects, partitioned by sequence identity into train, validation, and test splits for de novo peptide sequencing benchmarks.
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This dataset was part of the [training data](https://instadeepai.github.io/InstaNovo/reference/models/?h=pride#training-datasets) for the InstaNovo model ([Eloff, Kalogeropoulos et al., *Nature Machine Intelligence*, 2025]((https://doi.org/10.1038/s42256-025-01019-5))).
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## Dataset Details
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## Acknowledgements
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This HuggingFace dataset was created by Jeroen Van Goey.
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Big thanks to Pathmanaban Ramasamy, Tine Claeys, and Lennart Martens of the CompOmics research group for providing us with this training data.
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## Citation
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