Organise by clade and split: copy every species to <clade>/<split>_species/ and the plant tutorial files to plants/ (flat copies kept for now)
a7b7ce7 verified | assembly species role tier source accession eval_chromosomes | |
| GCF_000002775.5_P.trichocarpa_v4.1 Populus trichocarpa validation NCBI RefSeq GCF_000002775.5 NC_037293.2 | |
| Tlatifoliav1.1 Typha latifolia validation JGI (GenBank copy) GCA_059706395.1 Chr15 | |
| MguttatusvarIM62v3.1 Mimulus guttatus test JGI (GenBank copy) GCA_051942635.1 Chr_11 | |
| GCF_003473485.1_MtrunA17r5.0-ANR Medicago truncatula test NCBI RefSeq GCF_003473485.1 NC_053047.1 | |
| TAIR10 Arabidopsis thaliana train 1 Ensembl Plants (Araport11 genes) GCA_000001735.1 | |
| GCF_000004075.3_Cucumber_9930_V3 Cucumis sativus train 1 NCBI RefSeq GCF_000004075.3 | |
| GCF_022201045.2_DVS_A1.0 Citrus sinensis train 1 NCBI RefSeq GCF_022201045.2 | |
| GCF_019578655.1_ASM1957865v1 Ricinus communis train 1 NCBI RefSeq GCF_019578655.1 | |
| GCF_020921035.1_ASM2092103v1 Rhodamnia argentea train 1 NCBI RefSeq GCF_020921035.1 | |
| GCF_005286985.2_Setaria_viridis_v4.0 Setaria viridis train 1 NCBI RefSeq GCF_005286985.2 | |
| GCF_016808095.1_ASM1680809v1 Vigna angularis train 1 NCBI RefSeq GCF_016808095.1 | |
| GCF_030704535.1_ASM3070453v1 Vitis vinifera train 1 NCBI RefSeq GCF_030704535.1 | |
| GCF_031755915.1_ASM3175591v1 Ziziphus jujuba train 2 NCBI RefSeq GCF_031755915.1 | |
| GCF_018687715.1_C.illinoinensisPawnee_v1 Carya illinoinensis train 2 NCBI RefSeq GCF_018687715.1 | |
| GCF_036884655.1_Cavendish_Baxijiao_AAA Musa acuminata train 2 NCBI RefSeq GCF_036884655.1 | |
| GCF_958298935.1_lpPhrAust1.1 Phragmites australis train 2 NCBI RefSeq GCF_958298935.1 | |
| IRGSP-1.0 Oryza sativa train 2 Ensembl Plants genome, NCBI RefSeq genes GCF_001433935.1 | |
| GCF_000309985.2_CAAS_Brap_v3.01 Brassica rapa train 3 NCBI RefSeq GCF_000309985.2 | |
| GCF_025177605.1_USDA_Cmelo_AY_1.0 Cucumis melo train 3 NCBI RefSeq GCF_025177605.1 | |
| GCF_002994745.2_RchiOBHm-V2 Rosa chinensis train 3 NCBI RefSeq GCF_002994745.2 | |
| GCF_019419815.1_Pyrus_bretschneideri_v1 Pyrus bretschneideri train 3 NCBI RefSeq GCF_019419815.1 | |
| GCF_042453785.1_GDT2T_hap1 Malus domestica train 3 NCBI RefSeq GCF_042453785.1 | |
| GCF_937616625.2_ddMerAnnu1.2 Mercurialis annua train 3 NCBI RefSeq GCF_937616625.2 | |
| GCF_963576675.1_ddEupLath1.1 Euphorbia lathyris train 3 NCBI RefSeq GCF_963576675.1 | |
| GCF_020379485.1_Da-Ae Brassica napus train 3 NCBI RefSeq GCF_020379485.1 | |
| GCF_030052815.1_ASM3005281v1 Hevea brasiliensis train 3 NCBI RefSeq GCF_030052815.1 | |
| GCF_904849725.1_MorexV3_pseudomolecules_assembly Hordeum vulgare train 3 NCBI RefSeq GCF_904849725.1 | |
| Zm-B73-REFERENCE-NAM-5.0 Zea mays train 3 Ensembl Plants genome, NCBI RefSeq genes GCF_902167145.1 | |
| Gossypium_hirsutum_v2.1 Gossypium hirsutum train 3 NCBI RefSeq GCF_007990345.1 | |
| Glycine_max_v2.1 Glycine max train 4 Ensembl Plants (INSDC genes) GCA_000004515.4 | |