Add tier-1 training, validation and test assemblies
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- .gitattributes +3 -0
- GCF_000002775.5_P.trichocarpa_v4.1/genome.fa.gz +3 -0
- GCF_000002775.5_P.trichocarpa_v4.1/genome.fa.gz.fai +24 -0
- GCF_000002775.5_P.trichocarpa_v4.1/genome.fa.gz.gzi +0 -0
- GCF_000002775.5_P.trichocarpa_v4.1/labels.bed.gz +3 -0
- GCF_000002775.5_P.trichocarpa_v4.1/prediction.gff3 +38 -0
- GCF_000002775.5_P.trichocarpa_v4.1/pseudogenes.bed +0 -0
- GCF_000002775.5_P.trichocarpa_v4.1/reference.gff3.gz +3 -0
- GCF_000004075.3_Cucumber_9930_V3/genome.fa.gz +3 -0
- GCF_000004075.3_Cucumber_9930_V3/genome.fa.gz.fai +56 -0
- GCF_000004075.3_Cucumber_9930_V3/genome.fa.gz.gzi +0 -0
- GCF_000004075.3_Cucumber_9930_V3/labels.bed.gz +3 -0
- GCF_003473485.1_MtrunA17r5.0-ANR/genome.fa.gz +3 -0
- GCF_003473485.1_MtrunA17r5.0-ANR/genome.fa.gz.fai +14 -0
- GCF_003473485.1_MtrunA17r5.0-ANR/genome.fa.gz.gzi +3 -0
- GCF_003473485.1_MtrunA17r5.0-ANR/labels.bed.gz +3 -0
- GCF_003473485.1_MtrunA17r5.0-ANR/pseudogenes.bed +0 -0
- GCF_003473485.1_MtrunA17r5.0-ANR/reference.gff3.gz +3 -0
- GCF_005286985.2_Setaria_viridis_v4.0/genome.fa.gz +3 -0
- GCF_005286985.2_Setaria_viridis_v4.0/genome.fa.gz.fai +10 -0
- GCF_005286985.2_Setaria_viridis_v4.0/genome.fa.gz.gzi +0 -0
- GCF_005286985.2_Setaria_viridis_v4.0/labels.bed.gz +3 -0
- GCF_016808095.1_ASM1680809v1/genome.fa.gz +3 -0
- GCF_016808095.1_ASM1680809v1/genome.fa.gz.fai +13 -0
- GCF_016808095.1_ASM1680809v1/genome.fa.gz.gzi +3 -0
- GCF_016808095.1_ASM1680809v1/labels.bed.gz +3 -0
- GCF_019578655.1_ASM1957865v1/genome.fa.gz +3 -0
- GCF_019578655.1_ASM1957865v1/genome.fa.gz.fai +12 -0
- GCF_019578655.1_ASM1957865v1/genome.fa.gz.gzi +0 -0
- GCF_019578655.1_ASM1957865v1/labels.bed.gz +3 -0
- GCF_020921035.1_ASM2092103v1/genome.fa.gz +3 -0
- GCF_020921035.1_ASM2092103v1/genome.fa.gz.fai +15 -0
- GCF_020921035.1_ASM2092103v1/genome.fa.gz.gzi +0 -0
- GCF_020921035.1_ASM2092103v1/labels.bed.gz +3 -0
- GCF_022201045.2_DVS_A1.0/genome.fa.gz +3 -0
- GCF_022201045.2_DVS_A1.0/genome.fa.gz.fai +11 -0
- GCF_022201045.2_DVS_A1.0/genome.fa.gz.gzi +0 -0
- GCF_022201045.2_DVS_A1.0/labels.bed.gz +3 -0
- GCF_030704535.1_ASM3070453v1/genome.fa.gz +3 -0
- GCF_030704535.1_ASM3070453v1/genome.fa.gz.fai +21 -0
- GCF_030704535.1_ASM3070453v1/genome.fa.gz.gzi +3 -0
- GCF_030704535.1_ASM3070453v1/labels.bed.gz +3 -0
- MguttatusvarIM62v3.1/genome.fa.gz +3 -0
- MguttatusvarIM62v3.1/genome.fa.gz.fai +14 -0
- MguttatusvarIM62v3.1/genome.fa.gz.gzi +0 -0
- MguttatusvarIM62v3.1/labels.bed.gz +3 -0
- MguttatusvarIM62v3.1/pseudogenes.bed +0 -0
- MguttatusvarIM62v3.1/reference.gff3.gz +3 -0
- TAIR10/genome.fa.gz +3 -0
- TAIR10/genome.fa.gz.fai +5 -0
.gitattributes
CHANGED
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@@ -58,3 +58,6 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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# Video files - compressed
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*.mp4 filter=lfs diff=lfs merge=lfs -text
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*.webm filter=lfs diff=lfs merge=lfs -text
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# Video files - compressed
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*.mp4 filter=lfs diff=lfs merge=lfs -text
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*.webm filter=lfs diff=lfs merge=lfs -text
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GCF_003473485.1_MtrunA17r5.0-ANR/genome.fa.gz.gzi filter=lfs diff=lfs merge=lfs -text
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GCF_016808095.1_ASM1680809v1/genome.fa.gz.gzi filter=lfs diff=lfs merge=lfs -text
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GCF_030704535.1_ASM3070453v1/genome.fa.gz.gzi filter=lfs diff=lfs merge=lfs -text
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GCF_000002775.5_P.trichocarpa_v4.1/genome.fa.gz
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version https://git-lfs.github.com/spec/v1
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oid sha256:16f0f8f954abddb5acf3f2aab6beb26b6271ce423ba249d62a3285b1e308addd
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size 129705072
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GCF_000002775.5_P.trichocarpa_v4.1/genome.fa.gz.fai
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NC_037285.2 49788581 13 60 61
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NC_037286.2 25242375 50618417 60 61
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NC_037287.2 21678634 76281512 60 61
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NC_037288.2 24140038 98321470 60 61
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NC_037289.2 24981103 122863855 60 61
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NC_037290.2 27516652 148261323 60 61
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NC_037291.2 15561420 176236599 60 61
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NC_037292.2 19195260 192057389 60 61
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NC_037293.2 12987399 211572583 60 61
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NC_037294.2 22799081 224776452 60 61
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NC_037295.2 19288771 247955531 60 61
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NC_037296.2 15589050 267565795 60 61
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NC_037297.2 15705617 283414676 60 61
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NC_037298.2 17801709 299382067 60 61
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NC_037299.2 15231745 317480485 60 61
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NC_037300.2 14619816 332966106 60 61
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NC_037301.2 15189755 347829599 60 61
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NC_037302.2 16264003 363272530 60 61
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NC_037303.2 15623655 379807613 60 61
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NW_026291139.1 640640 395691679 60 61
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NW_026291140.1 362030 396343013 60 61
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NW_026291141.1 298400 396711093 60 61
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NW_026291142.1 239390 397014483 60 61
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NC_009143.1 157033 397257876 60 61
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GCF_000002775.5_P.trichocarpa_v4.1/genome.fa.gz.gzi
ADDED
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Binary file (97.4 kB). View file
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GCF_000002775.5_P.trichocarpa_v4.1/labels.bed.gz
ADDED
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version https://git-lfs.github.com/spec/v1
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oid sha256:a24494b181fa39ab416f808ec3228a66f80cee3c5f56fadaa1b7f17b8d1ad1f9
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size 4109122
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GCF_000002775.5_P.trichocarpa_v4.1/prediction.gff3
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##gff-version 3
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NC_009143.1 NTv3 gene 1 40960 . - . ID=gene_18_m
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NC_009143.1 NTv3 intron 1 40960 . - . ID=gene_18_m_intron_1;Parent=gene_18_m
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NC_009143.1 NTv3 gene 8193 32661 . + . ID=gene_1_p
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NC_009143.1 NTv3 intron 8193 32654 . + . ID=gene_1_p_intron_8193;Parent=gene_1_p
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| 6 |
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NC_009143.1 NTv3 CDS 32655 32661 . + 1 ID=gene_1_p_CDS_32655;Parent=gene_1_p
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| 7 |
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NC_009143.1 NTv3 gene 32769 81833 . + . ID=gene_2_p
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| 8 |
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NC_009143.1 NTv3 intron 32769 81826 . + . ID=gene_2_p_intron_32769;Parent=gene_2_p
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| 9 |
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NC_009143.1 NTv3 gene 41054 49152 . - . ID=gene_19_m
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| 10 |
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NC_009143.1 NTv3 CDS 41054 41060 . - 1 ID=gene_19_m_CDS_41054;Parent=gene_19_m
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| 11 |
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NC_009143.1 NTv3 intron 41061 49152 . - . ID=gene_19_m_intron_41061;Parent=gene_19_m
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| 12 |
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NC_009143.1 NTv3 gene 49276 73728 . - . ID=gene_20_m
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| 13 |
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NC_009143.1 NTv3 CDS 49276 49282 . - 1 ID=gene_20_m_CDS_49276;Parent=gene_20_m
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| 14 |
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NC_009143.1 NTv3 intron 49283 73728 . - . ID=gene_20_m_intron_49283;Parent=gene_20_m
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| 15 |
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NC_009143.1 NTv3 gene 73846 81920 . - . ID=gene_21_m
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| 16 |
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NC_009143.1 NTv3 CDS 73846 73852 . - 1 ID=gene_21_m_CDS_73846;Parent=gene_21_m
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| 17 |
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NC_009143.1 NTv3 intron 73853 81920 . - . ID=gene_21_m_intron_73853;Parent=gene_21_m
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| 18 |
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NC_009143.1 NTv3 CDS 81827 81833 . + 1 ID=gene_2_p_CDS_81827;Parent=gene_2_p
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| 19 |
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NC_009143.1 NTv3 gene 81921 98189 . + . ID=gene_3_p
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| 20 |
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NC_009143.1 NTv3 intron 81921 98182 . + . ID=gene_3_p_intron_81921;Parent=gene_3_p
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| 21 |
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NC_009143.1 NTv3 gene 82015 122880 . - . ID=gene_22_m
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| 22 |
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NC_009143.1 NTv3 CDS 82015 82024 . - 1 ID=gene_22_m_CDS_82015;Parent=gene_22_m
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| 23 |
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NC_009143.1 NTv3 intron 82025 122880 . - . ID=gene_22_m_intron_82025;Parent=gene_22_m
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| 24 |
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NC_009143.1 NTv3 CDS 98183 98189 . + 1 ID=gene_3_p_CDS_98183;Parent=gene_3_p
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| 25 |
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NC_009143.1 NTv3 gene 98305 106386 . + . ID=gene_4_p
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| 26 |
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NC_009143.1 NTv3 intron 98305 106382 . + . ID=gene_4_p_intron_98305;Parent=gene_4_p
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| 27 |
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NC_009143.1 NTv3 CDS 106383 106386 . + 1 ID=gene_4_p_CDS_106383;Parent=gene_4_p
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| 28 |
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NC_009143.1 NTv3 gene 106497 130969 . + . ID=gene_5_p
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| 29 |
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NC_009143.1 NTv3 intron 106497 130965 . + . ID=gene_5_p_intron_106497;Parent=gene_5_p
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| 30 |
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NC_009143.1 NTv3 gene 123007 139264 . - . ID=gene_23_m
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| 31 |
+
NC_009143.1 NTv3 CDS 123007 123010 . - 1 ID=gene_23_m_CDS_123007;Parent=gene_23_m
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| 32 |
+
NC_009143.1 NTv3 intron 123011 139264 . - . ID=gene_23_m_intron_123011;Parent=gene_23_m
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| 33 |
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NC_009143.1 NTv3 CDS 130966 130969 . + 1 ID=gene_5_p_CDS_130966;Parent=gene_5_p
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| 34 |
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NC_009143.1 NTv3 gene 131073 157033 . + . ID=gene_6_p
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| 35 |
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NC_009143.1 NTv3 intron 131073 157033 . + . ID=gene_6_p_intron_131073;Parent=gene_6_p
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| 36 |
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NC_009143.1 NTv3 gene 139383 157033 . - . ID=gene_24_m
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| 37 |
+
NC_009143.1 NTv3 CDS 139383 139386 . - 1 ID=gene_24_m_CDS_139383;Parent=gene_24_m
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| 38 |
+
NC_009143.1 NTv3 intron 139387 157033 . - . ID=gene_24_m_intron_139387;Parent=gene_24_m
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GCF_000002775.5_P.trichocarpa_v4.1/pseudogenes.bed
ADDED
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File without changes
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GCF_000002775.5_P.trichocarpa_v4.1/reference.gff3.gz
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version https://git-lfs.github.com/spec/v1
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oid sha256:e5084f7a3f23105d4587c69081686736afbf32727bc8d3e98e984b432b4c31cb
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size 2462567
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GCF_000004075.3_Cucumber_9930_V3/genome.fa.gz
ADDED
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@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:a1aa91ac4785240fa51c51463fa4a226f18e699189537b1fd8732d812d88a165
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size 75141395
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GCF_000004075.3_Cucumber_9930_V3/genome.fa.gz.fai
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@@ -0,0 +1,56 @@
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NC_026655.2 32926272 13 60 61
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NC_026656.2 24837039 33475070 60 61
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NC_026657.2 40877379 58726073 60 61
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NC_026658.2 26827763 100284755 60 61
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NC_026659.2 31913682 127559661 60 61
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NC_026660.2 31125843 160005251 60 61
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NC_026661.2 22466726 191649872 60 61
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NW_022279510.1 143075 214491060 60 61
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NW_022279511.1 146841 214636536 60 61
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NW_022279512.1 139185 214785841 60 61
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NW_022279513.1 138203 214927362 60 61
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NW_022279514.1 137813 215067885 60 61
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NW_022279515.1 133075 215208011 60 61
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NW_022279546.1 898249 215343320 60 61
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NW_022279547.1 508943 216256556 60 61
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NW_022279548.1 474992 216773998 60 61
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NW_022279549.1 470089 217256923 60 61
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NW_022279550.1 363065 217734863 60 61
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NW_022279551.1 341446 218103996 60 61
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NW_022279552.1 319892 218451149 60 61
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NW_022279553.1 312564 218776389 60 61
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NW_022279554.1 445576 219094179 60 61
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NW_022279555.1 270192 219547198 60 61
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NW_022279556.1 257883 219821910 60 61
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NW_022279557.1 245606 220084108 60 61
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NW_022279558.1 240083 220333824 60 61
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NW_022279559.1 410025 220577925 60 61
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NW_022279560.1 217548 220994800 60 61
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NW_022279561.1 208472 221215990 60 61
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NW_022279562.1 194636 221427953 60 61
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NW_022279563.1 193784 221625849 60 61
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NW_022279564.1 190030 221822879 60 61
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NW_022279565.1 181498 222016093 60 61
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NW_022279566.1 175228 222200632 60 61
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NW_022279567.1 175175 222378797 60 61
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NW_022279568.1 175164 222556908 60 61
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NW_022279569.1 175020 222735008 60 61
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NW_022279570.1 174987 222912961 60 61
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NW_022279571.1 169004 223090881 60 61
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NW_022279572.1 168909 223262718 60 61
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NW_022279573.1 168391 223434459 60 61
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NW_022279574.1 168119 223605673 60 61
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NW_022279575.1 170109 223776610 60 61
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NW_022279576.1 166175 223949571 60 61
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NW_022279577.1 180766 224118532 60 61
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NW_022279578.1 162647 224302327 60 61
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NW_022279579.1 160015 224467701 60 61
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NW_022279580.1 260018 224630399 60 61
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NW_022279581.1 160003 224894767 60 61
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NW_022279582.1 160002 225057453 60 61
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NW_022279583.1 159972 225220138 60 61
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NW_022279584.1 154364 225382793 60 61
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NW_022279585.1 146456 225539746 60 61
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NW_022279586.1 143614 225688659 60 61
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| 55 |
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NC_016005.1 1555935 225834680 60 61
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NC_007144.1 155293 227416561 60 61
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GCF_000004075.3_Cucumber_9930_V3/genome.fa.gz.gzi
ADDED
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Binary file (55.8 kB). View file
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GCF_000004075.3_Cucumber_9930_V3/labels.bed.gz
ADDED
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Chr_01 13883608 8 60 61
|
| 2 |
+
Chr_02 20544351 14115018 60 61
|
| 3 |
+
Chr_03 23796107 35001783 60 61
|
| 4 |
+
Chr_04 22814073 59194500 60 61
|
| 5 |
+
Chr_05 21770955 82388816 60 61
|
| 6 |
+
Chr_06 20891190 104522629 60 61
|
| 7 |
+
Chr_07 21879443 125762014 60 61
|
| 8 |
+
Chr_08 27686485 148006123 60 61
|
| 9 |
+
Chr_09 25153474 176154058 60 61
|
| 10 |
+
Chr_10 22115060 201726765 60 61
|
| 11 |
+
Chr_11 33601899 224210418 60 61
|
| 12 |
+
Chr_12 25847345 258372357 60 61
|
| 13 |
+
Chr_13 30765978 284650500 60 61
|
| 14 |
+
Chr_14 28290211 315929253 60 61
|
MguttatusvarIM62v3.1/genome.fa.gz.gzi
ADDED
|
Binary file (84.5 kB). View file
|
|
|
MguttatusvarIM62v3.1/labels.bed.gz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:dc723961a158d47a882b05950c7a474bc076c9711ee8cd591296043464c9f948
|
| 3 |
+
size 3270693
|
MguttatusvarIM62v3.1/pseudogenes.bed
ADDED
|
File without changes
|
MguttatusvarIM62v3.1/reference.gff3.gz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:393fe55c1671a42d2eacdbb04ebddbf0befca60f4c62c61bc3d2af43ffdc613c
|
| 3 |
+
size 2140248
|
TAIR10/genome.fa.gz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:b6b915d9f27ea7f936c0ed1d9430d0627b92e68166adc3fd9447e509bf4eac53
|
| 3 |
+
size 38980731
|
TAIR10/genome.fa.gz.fai
ADDED
|
@@ -0,0 +1,5 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1 30427671 3 60 61
|
| 2 |
+
2 19698289 30934805 60 61
|
| 3 |
+
3 23459830 50961402 60 61
|
| 4 |
+
4 18585056 74812233 60 61
|
| 5 |
+
5 26975502 93707043 60 61
|