file_id species_common_name species_name file_assembly mean std assay description SRR13808079 arabidopsis arabidopsis_thaliana TAIR10 0.2163307348506108 3.1030838273164427 ribo-seq flower_mature_riboseq SRR13808080 arabidopsis arabidopsis_thaliana TAIR10 0.2153279872525975 3.470775928643807 ribo-seq flower_mature_riboseq_2 SRR13808081 arabidopsis arabidopsis_thaliana TAIR10 0.2154931308835975 16.233945803148075 ribo-seq fruit_mature_riboseq SRR13808084 arabidopsis arabidopsis_thaliana TAIR10 0.2195751941944145 3.947440305437182 ribo-seq root_mature_riboseq ENCSR628PLS human human hg38 0.6435424403031892 0.9339362854508154 ATAC-seq GM18861_chromatin_accessibility ENCSR487QSB human human hg38 0.6586369555288264 0.7492997609314198 ATAC-seq GM18907_chromatin_accessibility ENCSR410DWV human human hg38 0.4475774291732938 1.2772447840876042 ATAC-seq motor_neuron_chromatin_accessibility ENCSR325NFE human human hg38 0.7262535549063383 0.586216005247396 ATAC-seq bile_duct_chromatin_accessibility ENCSR814RGG human human hg38 0.7250170204686959 0.6537994463881371 ATAC-seq ureter_chromatin_accessibility ENCSR863PSM human human hg38 0.7440286649149251 1.5007683834889258 Histone ChIP-seq BLaER1_H3K4me1 ENCSR682BFG human human hg38 0.6668583718496784 0.7765777637729082 Histone ChIP-seq motor_neuron_H3K4me1 ENCSR754DRC human human hg38 0.6373463806837459 0.5265026906764074 Histone ChIP-seq motor_neuron_H3K27ac ENCSR962OTG human human hg38 0.4863640503288768 1.8579334571907096 Histone ChIP-seq motor_neuron_H3K4me3 ENCSR046BCI_M human human hg38 0.0021187649900923 0.8367940766826674 PRO-cap A673_PROcap_minus ENCSR046BCI_P human human hg38 0.0012860527790824 0.6183644122557255 PRO-cap A673_PROcap_plus ENCSR100LIJ_M human human hg38 0.0034310185237725 1.0150696226329117 PRO-cap Caco-2_PROcap_minus ENCSR100LIJ_P human human hg38 0.0034626951599869 1.046981374304357 PRO-cap Caco-2_PROcap_plus ENCSR935RNW_M human human hg38 0.0037003528259055 1.1613555909359403 PRO-cap Calu3_PROcap_minus ENCSR935RNW_P human human hg38 0.0037613183536094 1.281101084146212 PRO-cap Calu3_PROcap_plus ENCSR114HGS_M human human hg38 0.0021946710840388 0.1430988717724478 PRO-cap K562_PROcap_minus ENCSR114HGS_P human human hg38 0.0022747382457349 0.1342900130710761 PRO-cap K562_PROcap_plus ENCSR799DGV_M human human hg38 0.003358760912832 0.9521653705523933 PRO-cap MCF10A_PROcap_minus ENCSR799DGV_P human human hg38 0.0040084580277698 1.1197949222812478 PRO-cap MCF10A_PROcap_plus ENCSR154HRN_M human human hg38 0.0049800130288615 0.0922530935893968 eCLIP K562_HNRNPA1_eCLIP_minus ENCSR154HRN_P human human hg38 0.0057952034548773 0.381740603175436 eCLIP K562_HNRNPA1_eCLIP_plus ENCSR249ROI_M human human hg38 0.0057446411632077 0.0920737491613095 eCLIP K562_HNRNPC_eCLIP_minus ENCSR249ROI_P human human hg38 0.0062246801755501 0.2005703340406447 eCLIP K562_HNRNPC_eCLIP_plus ENCSR321PWZ_M human human hg38 0.0082021207271243 0.3104164423652771 eCLIP K562_SRSF1_eCLIP_minus ENCSR321PWZ_P human human hg38 0.0087737851528512 0.4716636426234966 eCLIP K562_SRSF1_eCLIP_plus ENCSR484LTQ_M human human hg38 0.0049440275075031 0.1321719643876737 eCLIP K562_NCBP2_eCLIP_minus ENCSR484LTQ_P human human hg38 0.0054827793298859 0.3600114723380397 eCLIP K562_NCBP2_eCLIP_plus ENCSR862QCH_M human human hg38 0.0053073775581925 0.217458715116779 eCLIP K562_U2AF1_eCLIP_minus ENCSR862QCH_P human human hg38 0.0062703905595772 1.1117379293167922 eCLIP K562_U2AF1_eCLIP_plus ENCSR527JGN_M human human hg38 0.0117760435384131 1.289040052392532 polyA plus RNA-seq BLaER1_gene_expression_minus ENCSR527JGN_P human human hg38 0.0108069604715809 0.8208027604033814 polyA plus RNA-seq BLaER1_gene_expression_plus ENCSR701YIC human human hg38 0.0463600992751594 2.4867306635005346 total RNA-seq motor_neuron_gene_expression ENCSR619DQO_M human human hg38 0.015490478035405 0.9882145585993056 total RNA-seq ureter_gene_expression_minus ENCSR619DQO_P human human hg38 0.0161253098689726 1.266080547499186 total RNA-seq ureter_gene_expression_plus SRR13808051 maize zea_mays Zm-B73-REFERENCE-NAM-5.0 0.0123121697237405 0.7353861573738762 ribo-seq ear_V12_stage_riboseq SRR13808052 maize zea_mays Zm-B73-REFERENCE-NAM-5.0 0.0125412695816011 1.096584460418735 ribo-seq ear_V12_stage_riboseq_2 SRR13808056 maize zea_mays Zm-B73-REFERENCE-NAM-5.0 0.0122846717976222 0.8932984520439872 ribo-seq root_14days_riboseq SRR13808058 maize zea_mays Zm-B73-REFERENCE-NAM-5.0 0.0126940920880924 2.407871109089266 ribo-seq seedling_14days_riboseq SRR13808059 maize zea_mays Zm-B73-REFERENCE-NAM-5.0 0.0126743317713939 1.2356836948831509 ribo-seq stem_14days_riboseq SRR13808061 maize zea_mays Zm-B73-REFERENCE-NAM-5.0 0.0124028148500683 0.7446762256877293 ribo-seq stem_14days_riboseq_2 SRR13808062 maize zea_mays Zm-B73-REFERENCE-NAM-5.0 0.0122071551933559 1.264255709838627 ribo-seq tassel_V12_stage_riboseq SRR13808063 maize zea_mays Zm-B73-REFERENCE-NAM-5.0 0.0122228879259769 1.402009396296207 ribo-seq tassel_V12_stage_riboseq_2 SRR13808067 rice oryza_sativa IRGSP-1.0 0.0716897626058698 24.111786364922818 ribo-seq leaf_booting_stage_riboseq SRR13808068 rice oryza_sativa IRGSP-1.0 0.0694512148308133 5.325561799318084 ribo-seq root_V2_stage_riboseq SRR13808069 rice oryza_sativa IRGSP-1.0 0.0692473103661081 5.29674938424028 ribo-seq seedling_V2_stage_riboseq SRR13808070 rice oryza_sativa IRGSP-1.0 0.0707056244128289 12.012955091404017 ribo-seq sheath_V2_stage_riboseq SRR13808072 rice oryza_sativa IRGSP-1.0 0.070618220683456 11.90233926633528 ribo-seq sheath_V2_stage_riboseq_2 SRR13808073 rice oryza_sativa IRGSP-1.0 0.0690367858732664 4.712492604981989 ribo-seq sheath_booting_stage_riboseq SRR13808074 rice oryza_sativa IRGSP-1.0 0.0703811829092719 6.489808679315709 ribo-seq sheath_booting_stage_riboseq_2 SRR13808075 rice oryza_sativa IRGSP-1.0 0.0717847766120033 40.27964938558939 ribo-seq spikelet_booting_stage_riboseq SRR13808076 rice oryza_sativa IRGSP-1.0 0.0690428935018969 10.103141787441317 ribo-seq spikelet_booting_stage_riboseq_2 SRR13808077 rice oryza_sativa IRGSP-1.0 0.0697899016282989 7.672262225743507 ribo-seq stem_booting_stage_riboseq SRR13808078 rice oryza_sativa IRGSP-1.0 0.0693623399226404 4.901418201072501 ribo-seq stem_booting_stage_riboseq_2 SRR13808064 rice oryza_sativa IRGSP-1.0 0.0716274161454301 27.08604529383113 ribo-seq leaf_V2_stage_riboseq SRR13808065 rice oryza_sativa IRGSP-1.0 0.0719136698046861 26.66272106670231 ribo-seq leaf_V2_stage_riboseq_2 SRR13808066 rice oryza_sativa IRGSP-1.0 0.0715144600272903 20.73264586005325 ribo-seq leaf_booting_stage_riboseq_2 SRX27799703 tomato solanum_lycopersicum SL3 0.1224991225570635 0.973243071222082 ATAC-seq fruit_0DPA_chromatin_accessibility SRX27799731 tomato solanum_lycopersicum SL3 0.1240923183179663 0.5282919036884876 ATAC-seq fruit_10DPA_chromatin_accessibility SRX27799719 tomato solanum_lycopersicum SL3 0.1266786155392918 0.9391638748321228 ATAC-seq fruit_3DPA_chromatin_accessibility SRX27799727 tomato solanum_lycopersicum SL3 0.1232167239495222 0.5753064022845156 ATAC-seq fruit_5DPA_chromatin_accessibility SRX27799722 tomato solanum_lycopersicum SL3 0.1304506395019022 0.9010066841621408 ATAC-seq fruit_3DBA_chromatin_accessibility SRX27799718 tomato solanum_lycopersicum SL3 0.1215000381344795 0.9988209274408264 ATAC-seq fruit_7DPA_chromatin_accessibility SRX27799733 tomato solanum_lycopersicum SL3 0.1269436778623759 1.2181569898301396 ATAC-seq leaf_chromatin_accessibility SRX29291448 tomato solanum_lycopersicum SL3 0.1793254209280483 5.20255010919527 RNA-seq fruit_10DPA_MicroTom_gene_expression SRX29291447 tomato solanum_lycopersicum SL3 0.1794345645970627 4.537180833595343 RNA-seq fruit_10DPA_MicroTom_gene_expression_2 SRX29291446 tomato solanum_lycopersicum SL3 0.1791406253387177 5.074057047114392 RNA-seq fruit_10DPA_MicroTom_gene_expression_3 SRX29291445 tomato solanum_lycopersicum SL3 0.1790573297761319 4.207060849558455 RNA-seq fruit_15DPA_Wild_LA1781_gene_expression SRX29291444 tomato solanum_lycopersicum SL3 0.1786737789057393 3.7025339508949098 RNA-seq fruit_5DPA_MicroTom_gene_expression SRX29291443 tomato solanum_lycopersicum SL3 0.1791590373362215 3.709806836993176 RNA-seq fruit_5DPA_MicroTom_gene_expression_2 SRX29291442 tomato solanum_lycopersicum SL3 0.1790133996882216 4.089635832973803 RNA-seq fruit_15DPA_Wild_LA1781_gene_expression_2 SRX29291441 tomato solanum_lycopersicum SL3 0.1789685669418317 3.916206985354531 RNA-seq fruit_5DPA_MicroTom_gene_expression_3 SRX29291440 tomato solanum_lycopersicum SL3 0.1792191996369422 3.4985942488181707 RNA-seq fruit_0DPA_MicroTom_gene_expression SRX29291439 tomato solanum_lycopersicum SL3 0.1792338427527612 3.767797212529071 RNA-seq fruit_0DPA_MicroTom_gene_expression_2 SRX29291438 tomato solanum_lycopersicum SL3 0.1793945903956706 3.704499449241803 RNA-seq fruit_0DPA_MicroTom_gene_expression_3 SRX29291431 tomato solanum_lycopersicum SL3 0.178730514076054 4.479109902110612 RNA-seq fruit_15DPA_MicroTom_gene_expression SRX29291430 tomato solanum_lycopersicum SL3 0.1790845853329196 4.369213326115213 RNA-seq fruit_15DPA_MicroTom_gene_expression_2 ERR1464183 cattle bos_taurus ARS-UCD1.2 0.0364146905461255 1.4646931910946102 RNA-seq spleen_gene_expression ERR1464180 cattle bos_taurus ARS-UCD1.2 0.0363360411949832 0.9733739089661418 RNA-seq left_lung_lobe_gene_expression ERR1464175 cattle bos_taurus ARS-UCD1.2 0.03120367462923 0.7815889665927983 RNA-seq hypothalamus_gene_expression ERR2664213 cattle bos_taurus ARS-UCD1.2 0.0536859210862167 1.936195531669691 RNA-seq CD8_gene_expression ERR1464174 cattle bos_taurus ARS-UCD1.2 0.0322127956873575 0.6752462720072162 RNA-seq frontal_cortex_gene_expression SRX9176795 cattle bos_taurus ARS-UCD1.2 0.0128444139915812 0.046666444306623 ATAC-seq lung_chromatin_accessibility ERX2628478 cattle bos_taurus ARS-UCD1.2 0.0446207850839187 0.0866929566034853 ATAC-seq cd4_chromatin_accessibility ERX2628481 cattle bos_taurus ARS-UCD1.2 0.0432338432961512 0.0704641280232796 ATAC-seq cd8_chromatin_accessibility SRX5649072 cattle bos_taurus ARS-UCD1.2 0.0136227685036058 0.0899532082005301 ATAC-seq rumen_epithelial_cells_chromatin_accessibility SRX9176799 cattle bos_taurus ARS-UCD1.2 0.0131510825858563 0.0649949441636489 ATAC-seq skeletal_muscle_chromatin_accessibility SRX9176803 cattle bos_taurus ARS-UCD1.2 0.0126445826252949 0.0334553234287736 ATAC-seq spleen_chromatin_accessibility SRX7703304 cattle bos_taurus ARS-UCD1.2 0.0423000496993185 0.0889494902923715 ATAC-seq embryo_day_14_elongating_chromatin_accessibility ERX5798621 cattle bos_taurus ARS-UCD1.2 0.0757612311294239 0.5016034664588983 Histone ChIP-seq hypothalamus_H3K4Me3 ERX5798616 cattle bos_taurus ARS-UCD1.2 0.0755449691616911 0.3232255979100419 Histone ChIP-seq frontal_cortex_H3K4Me3 ERX5798633 cattle bos_taurus ARS-UCD1.2 0.0753153121058764 0.3835405626205131 Histone ChIP-seq semimembranosus_muscle_H3K4Me3 ERX4795023 cattle bos_taurus ARS-UCD1.2 0.0383630090829481 0.0781030441295748 Histone ChIP-seq liver_H3K27Me3 ERX5798749 cattle bos_taurus ARS-UCD1.2 0.0753616718621524 0.2749413931846967 Histone ChIP-seq semimembranosus_muscle_H3K4Me1 ERX4794967 cattle bos_taurus ARS-UCD1.2 0.0426601397982135 0.0925488829471473 Histone ChIP-seq renal_medulla_H3K4Me1 ERX4795038 cattle bos_taurus ARS-UCD1.2 0.0361192348766098 0.1866775821041461 Histone ChIP-seq mammary_gland_H3K27Ac ERX5798687 cattle bos_taurus ARS-UCD1.2 0.0755173374859445 0.2350649024634413 Histone ChIP-seq semimembranosus_muscle_H3K27Ac ERX4794981 cattle bos_taurus ARS-UCD1.2 0.0423966492423845 0.13802395468429 Histone ChIP-seq lung_H3K27Ac ERX4795026 cattle bos_taurus ARS-UCD1.2 0.0373242812567081 0.0855074545961718 Histone ChIP-seq liver_H3K4Me1 ERX4794986 cattle bos_taurus ARS-UCD1.2 0.040078096788506 0.0884766966046595 Histone ChIP-seq mammary_gland_H3K27Me3 ERX5798711 cattle bos_taurus ARS-UCD1.2 0.0752669072577017 0.1507383379484376 Histone ChIP-seq semimembranosus_muscle_H3K27Me3 ERX4795019 cattle bos_taurus ARS-UCD1.2 0.0423742131391928 0.0938136169188532 TF ChIP-seq renal_medulla_CTCF ERX4795059 cattle bos_taurus ARS-UCD1.2 0.0443914607740012 0.3147300002505699 TF ChIP-seq kidney_CTCF ERX4794984 cattle bos_taurus ARS-UCD1.2 0.0395185496598663 0.1704710661982909 TF ChIP-seq lung_CTCF ERX4795088 cattle bos_taurus ARS-UCD1.2 0.0426808155652252 0.2447267382832701 TF ChIP-seq spleen_CTCF ERX3800751 cattle bos_taurus ARS-UCD1.2 0.0754410336072038 0.1867439352765507 TF ChIP-seq cerebellum_CTCF ERX4795054 cattle bos_taurus ARS-UCD1.2 0.0374459823918363 0.1338784595460949 TF ChIP-seq heart_CTCF SRX893731 fission_yeast schizosaccharomyces_pombe ASM294v2 5.096171278541107 18.556744615598163 ATAC-seq 1m_5min_chromatin_accessibility SRX893735 fission_yeast schizosaccharomyces_pombe ASM294v2 5.380359057725867 9.132847241460494 ATAC-seq 20m_20min_chromatin_accessibility SRX893733 fission_yeast schizosaccharomyces_pombe ASM294v2 5.288567085965638 11.725908191604388 ATAC-seq 20m_5min_chromatin_accessibility SRX893734 fission_yeast schizosaccharomyces_pombe ASM294v2 5.284211235284668 10.792912749782117 ATAC-seq 5m_20min_chromatin_accessibility SRX893732 fission_yeast schizosaccharomyces_pombe ASM294v2 5.21739693167811 19.777001426431067 ATAC-seq 5m_5min_chromatin_accessibility ERR1162944 fission_yeast schizosaccharomyces_pombe ASM294v2 5.958253334835027 31.208212498555262 RNA-seq grown_with_nitrogen_gene_expression ERR1162946 fission_yeast schizosaccharomyces_pombe ASM294v2 5.9611204371186854 24.739872748651827 RNA-seq grown_without_nitrogen_gene_expression SRR16019126 malaria_parasite plasmodium_falciparum GCA000002765v3 6.137035497911045 65.84172550064862 RNA-seq ring_10-15_hpi_gene_expression SRR16019133 malaria_parasite plasmodium_falciparum GCA000002765v3 6.227245127303615 67.61822338820797 RNA-seq schizont_40-45_hpi_gene_expression SRR16019130 malaria_parasite plasmodium_falciparum GCA000002765v3 6.228170629486198 65.67730319490333 RNA-seq trophozoite_25-30_hpi_gene_expression SRX5494567 malaria_parasite plasmodium_falciparum GCA000002765v3 5.471034069173504 10.475479641391862 ATAC-seq stage_10hpi_chromatin_accessibility SRX5494566 malaria_parasite plasmodium_falciparum GCA000002765v3 5.522440050061136 11.812646557518724 ATAC-seq stage_20hpi_chromatin_accessibility SRX5494565 malaria_parasite plasmodium_falciparum GCA000002765v3 5.844054156087746 8.785742624882646 ATAC-seq stage_30hpi_chromatin_accessibility SRX5494564 malaria_parasite plasmodium_falciparum GCA000002765v3 5.782396069465248 12.499800165183316 ATAC-seq stage_40hpi_chromatin_accessibility SRR594428 rat rattus_norvegicus mRatBN7 0.0263406805358472 0.9799129275651188 RNA-seq brain_gene_expression SRR594429 rat rattus_norvegicus mRatBN7 0.0277228570641685 1.4456725837539726 RNA-seq colon_gene_expression SRR594430 rat rattus_norvegicus mRatBN7 0.0277707029029758 3.7622577546715426 RNA-seq heart_gene_expression SRR594431 rat rattus_norvegicus mRatBN7 0.0277855003811138 2.447227795705376 RNA-seq kidney_gene_expression SRR594432 rat rattus_norvegicus mRatBN7 0.0280759831085404 3.678064706597424 RNA-seq liver_gene_expression SRR594433 rat rattus_norvegicus mRatBN7 0.0279487179700174 1.1194019173547989 RNA-seq lung_gene_expression SRR594434 rat rattus_norvegicus mRatBN7 0.0277950186753188 3.3682080941542933 RNA-seq skeletal_muscle_gene_expression SRR594435 rat rattus_norvegicus mRatBN7 0.0277758436156012 3.59088907945482 RNA-seq spleen_gene_expression SRR594436 rat rattus_norvegicus mRatBN7 0.0277784393153932 1.1887170922514096 RNA-seq testes_gene_expression SRX9339411 rat rattus_norvegicus mRatBN7 0.0429448866265786 0.7194596005758271 ATAC-seq liver_chromatin_accessibility SRX9339415 rat rattus_norvegicus mRatBN7 0.0417359914956487 1.184381042408859 ATAC-seq primary_motor_cortex_m1_chromatin_accessibility SRX9339416 rat rattus_norvegicus mRatBN7 0.043947272409051 1.664184365341748 ATAC-seq striatum_chromatin_accessibility SRR12055126 soil_amoeba dictyostelium_discoideum dicty_2.7 3.655101606900445 65.82551733235425 RNA-seq dev_stage_hr00_gene_expression SRR12055127 soil_amoeba dictyostelium_discoideum dicty_2.7 3.760146616120467 47.101639707396146 RNA-seq dev_stage_hr04_gene_expression SRR12055128 soil_amoeba dictyostelium_discoideum dicty_2.7 3.6816712264308977 39.41643833491642 RNA-seq dev_stage_hr08_gene_expression SRR12055129 soil_amoeba dictyostelium_discoideum dicty_2.7 3.6316344449637894 31.1535850745748 RNA-seq dev_stage_hr12_gene_expression SRR12055130 soil_amoeba dictyostelium_discoideum dicty_2.7 3.608340371635604 38.87140341664321 RNA-seq dev_stage_hr16_gene_expression SRR12055131 soil_amoeba dictyostelium_discoideum dicty_2.7 3.727341898428962 41.23871525153627 RNA-seq dev_stage_hr20_gene_expression SRR12055132 soil_amoeba dictyostelium_discoideum dicty_2.7 3.5360681477975935 39.739419937587094 RNA-seq dev_stage_hr24_gene_expression SRX893741 yeast saccharomyces_cerevisiae R64 5.362410729037817 11.27486231520126 ATAC-seq 0.6_m_nacl_15_minutes_chromatin_accessibility SRX893743 yeast saccharomyces_cerevisiae R64 5.4233780460938155 11.263000601427192 ATAC-seq 0.6_m_nacl_30_minutes_chromatin_accessibility SRX893745 yeast saccharomyces_cerevisiae R64 5.490805148103564 12.551450942951258 ATAC-seq 0.6_m_nacl_45_minutes_chromatin_accessibility SRX893747 yeast saccharomyces_cerevisiae R64 5.4231186410958 10.862549980453416 ATAC-seq 0.6_m_nacl_60_minutes_chromatin_accessibility SRX893737 yeast saccharomyces_cerevisiae R64 5.40439503608283 15.739034970107095 ATAC-seq chromatin_accessibility ERR3772438 yeast saccharomyces_cerevisiae R64 11.280879399630496 45.22696033119598 RNA-seq ethanol_cycle_102min_gene_expression ERR3772439 yeast saccharomyces_cerevisiae R64 11.177537598760436 42.65712010459349 RNA-seq ethanol_cycle_132min_gene_expression ERR3772440 yeast saccharomyces_cerevisiae R64 11.20021470099303 41.93375183307986 RNA-seq ethanol_cycle_142min_gene_expression ERR3772434 yeast saccharomyces_cerevisiae R64 11.23360959658453 42.22227946711775 RNA-seq ethanol_cycle_14min_gene_expression ERR3772428 yeast saccharomyces_cerevisiae R64 11.102680171970215 40.38568136646519 RNA-seq ethanol_cycle_162min_gene_expression ERR3772436 yeast saccharomyces_cerevisiae R64 11.30894566262077 45.5485503667265 RNA-seq ethanol_cycle_20min_gene_expression ERR3772430 yeast saccharomyces_cerevisiae R64 11.302211110144231 46.31184604454223 RNA-seq ethanol_cycle_92min_gene_expression