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README.md
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| Variant Effect Gene Expression | `variant_effect_gene_expression` | {ref sequence, alt sequence, label, tissue, chromosome, distance to nearest TSS} | 89060 | 8862 |
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### 1. CAGE Prediction
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Cap Analysis Gene Expression(CAGE) is a biological assay used to measure the level of mRNA production rather than steady state values, taking into account both production and
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degradation. Being able to accurately predict mRNA levels as measured by CAGE is essential for deciphering tissue-specific expression patterns, transcriptional networks, and
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| Variant Effect Gene Expression | `variant_effect_gene_expression` | {ref sequence, alt sequence, label, tissue, chromosome, distance to nearest TSS} | 89060 | 8862 |
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## Usage Example
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```python
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from datasets import load_dataset
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# Use this parameter to download sequences of arbitrary length (see docs below for edge cases)
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sequence_length=2048
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# One of ["cage_prediction", "bulk_rna_expression", "variant_effect_gene_expression"]
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task_name = "variant_effect_gene_expression"
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dataset = load_dataset(
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"InstaDeepAI/genomics-long-range-benchmark",
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task_name=task_name,
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sequence_length=sequence_length,
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)
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```
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### 1. CAGE Prediction
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Cap Analysis Gene Expression(CAGE) is a biological assay used to measure the level of mRNA production rather than steady state values, taking into account both production and
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degradation. Being able to accurately predict mRNA levels as measured by CAGE is essential for deciphering tissue-specific expression patterns, transcriptional networks, and
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