lcolonn's picture
feat: update visnet-spice2-t1x biomolecules (#6)
febc8f1 verified
{
"failed": false,
"score": 0.6600913270829193,
"systems": [
{
"structure_name": "chignolin_1uao_xray",
"rmsd_backbone_dihedrals": {
"PRO": 0.005984957669846892,
"THR": 0.0032628596919377696,
"ASP": 0.005472715957008152,
"TRP": 0.0046283784193227795,
"GLY": 0.004873352564445887,
"TYR": 0.004162106039571328,
"GLU": 0.005225358033361867
},
"hellinger_distance_backbone_dihedrals": {
"PRO": 0.9698767535570214,
"THR": 0.9190969712638675,
"ASP": 0.9388720422429672,
"TRP": 0.9521284872866635,
"GLY": 0.9595350608875204,
"TYR": 0.9356271738271181,
"GLU": 0.9363021524298334
},
"rmsd_sidechain_dihedrals": {
"PRO": 0.0708425484201879,
"THR": 0.06623862585799585,
"ASP": 0.004447623272893816,
"TRP": 0.005841267331701575,
"TYR": 0.005840834286953608,
"GLU": 0.0005706023498478019
},
"outliers_ratio_backbone_dihedrals": {
"PRO": 0.16,
"THR": 0.02,
"ASP": 0.0,
"TRP": 0.0,
"GLY": 0.0,
"TYR": 0.0,
"GLU": 0.04
},
"hellinger_distance_sidechain_dihedrals": {
"PRO": 0.7614520823658046,
"THR": 0.6675775106024616,
"ASP": 0.9055598212053451,
"TRP": 1.0,
"TYR": 0.9106886187747647,
"GLU": 0.9969237928907407
},
"outliers_ratio_sidechain_dihedrals": {
"PRO": 0.0,
"THR": 0.0,
"ASP": 0.24,
"TRP": 0.0,
"TYR": 0.0,
"GLU": 0.28
},
"failed": false
},
{
"structure_name": "trp_cage_2jof_xray",
"rmsd_backbone_dihedrals": {
"LYS": 0.005217098159661861,
"GLN": 0.0058055461910848155,
"LEU": 0.005217098159661861,
"PRO": 0.0030104044929656223,
"ASP": 0.005472715957008152,
"TRP": 0.006332800847714967,
"GLY": 0.003354022748735288,
"ARG": 0.004646976816274997,
"SER": 0.004123484774391209,
"TYR": 0.004991680409978576,
"ALA": 0.0047237428624691
},
"hellinger_distance_backbone_dihedrals": {
"LYS": 0.927746596026864,
"GLN": 0.9319752001591505,
"LEU": 0.9334666675879916,
"PRO": 0.9225425356412029,
"ASP": 0.9421057345156325,
"TRP": 0.9550461496048621,
"GLY": 0.9368997331014604,
"ARG": 0.96612531530366,
"SER": 0.9304257244639538,
"TYR": 0.9398203209528807,
"ALA": 0.9346842400388923
},
"rmsd_sidechain_dihedrals": {
"LYS": 8.00947840892114e-05,
"GLN": 0.0005707567724613201,
"LEU": 0.00593434160260515,
"PRO": 0.05649778756730214,
"ASP": 0.00588964649615637,
"TRP": 0.006001750586371454,
"ARG": 8.007573320892423e-05,
"SER": 0.055880825572522344,
"TYR": 0.005151894004569536
},
"outliers_ratio_backbone_dihedrals": {
"LYS": 0.0,
"GLN": 0.0,
"LEU": 0.0,
"PRO": 0.17,
"ASP": 0.0,
"TRP": 0.0,
"GLY": 0.02666666666666667,
"ARG": 0.0,
"SER": 0.0,
"TYR": 0.0,
"ALA": 0.0
},
"hellinger_distance_sidechain_dihedrals": {
"LYS": 0.9978726013567296,
"GLN": 0.9941256720087513,
"LEU": 1.0,
"PRO": 0.6801483412894389,
"ASP": 1.0,
"TRP": 0.950234162208524,
"ARG": 1.0,
"SER": 0.8535241021929907,
"TYR": 1.0
},
"outliers_ratio_sidechain_dihedrals": {
"LYS": 0.52,
"GLN": 0.0,
"LEU": 0.0,
"PRO": 0.0,
"ASP": 0.68,
"TRP": 0.0,
"ARG": 0.0,
"SER": 0.02,
"TYR": 1.0
},
"failed": false
},
{
"structure_name": "orexin_beta_1cq0_nmr",
"rmsd_backbone_dihedrals": {
"HIS": 0.005776950202209989,
"GLN": 0.0044203672472746735,
"PRO": 0.004113598198760432,
"LEU": 0.0031543263406110626,
"THR": 0.004609704985561263,
"ASN": 0.005151881869031241,
"GLY": 0.0026673506369223107,
"ARG": 0.00537860391309012,
"SER": 0.0034757225004694407,
"ILE": 0.005116322790176616,
"ALA": 0.0038199677144346595
},
"hellinger_distance_backbone_dihedrals": {
"HIS": 0.979012803526035,
"GLN": 0.9195275960195112,
"PRO": 0.9378918444825496,
"LEU": 0.9010386985503982,
"THR": 0.9476004947446275,
"ASN": 0.9584955205457715,
"GLY": 0.8996791857777747,
"ARG": 0.9466053425205737,
"SER": 0.9549310070441098,
"ILE": 0.9272799321714542,
"ALA": 0.9187429651932842
},
"rmsd_sidechain_dihedrals": {
"HIS": 0.005324455888489882,
"GLN": 0.00034086538821586525,
"PRO": 0.06123180001709352,
"LEU": 0.004198011739395515,
"THR": 0.04,
"ASN": 0.005303999791959221,
"ARG": 5.7768620523598935e-05,
"SER": 0.055256975426938935,
"ILE": 0.005513619500836089
},
"outliers_ratio_backbone_dihedrals": {
"HIS": 0.36,
"GLN": 0.0,
"PRO": 0.02,
"LEU": 0.008,
"THR": 0.0,
"ASN": 0.28,
"GLY": 0.008,
"ARG": 0.0,
"SER": 0.36,
"ILE": 0.0,
"ALA": 0.0
},
"hellinger_distance_sidechain_dihedrals": {
"HIS": 1.0,
"GLN": 0.9983077765280398,
"PRO": 0.7310240476099171,
"LEU": 0.9782806895557298,
"THR": 0.5518320758946861,
"ASN": 0.9906717247314041,
"ARG": 0.9963001309700177,
"SER": 0.6795920603838217,
"ILE": 1.0
},
"outliers_ratio_sidechain_dihedrals": {
"HIS": 0.0,
"GLN": 0.04,
"PRO": 0.0,
"LEU": 0.224,
"THR": 0.0,
"ASN": 0.24,
"ARG": 0.02,
"SER": 0.0,
"ILE": 0.04
},
"failed": false
}
],
"exploded_systems": [],
"rmsd_backbone_total": 0.004771139952433304,
"hellinger_distance_backbone_total": 0.9398888817609921,
"rmsd_sidechain_total": 0.01503684159497669,
"hellinger_distance_sidechain_total": 0.9251919704449876,
"outliers_ratio_backbone_total": 0.06263888888888888,
"outliers_ratio_sidechain_total": 0.15657142857142858,
"rmsd_backbone_dihedrals": {
"PRO": 0.00436965345385765,
"THR": 0.0039362823387495164,
"ASP": 0.005472715957008152,
"TRP": 0.005480589633518874,
"GLY": 0.0036315753167011616,
"TYR": 0.004576893224774952,
"GLU": 0.005225358033361867,
"LYS": 0.005217098159661861,
"GLN": 0.0051129567191797445,
"LEU": 0.004185712250136461,
"ARG": 0.005012790364682558,
"SER": 0.003799603637430325,
"ALA": 0.00427185528845188,
"HIS": 0.005776950202209989,
"ASN": 0.005151881869031241,
"ILE": 0.005116322790176616
},
"hellinger_distance_backbone_dihedrals": {
"PRO": 0.943437044560258,
"THR": 0.9333487330042475,
"ASP": 0.9404888883792999,
"TRP": 0.9535873184457628,
"GLY": 0.9320379932555851,
"TYR": 0.9377237473899994,
"GLU": 0.9363021524298334,
"LYS": 0.927746596026864,
"GLN": 0.9257513980893308,
"LEU": 0.9172526830691949,
"ARG": 0.9563653289121168,
"SER": 0.9426783657540319,
"ALA": 0.9267136026160883,
"HIS": 0.979012803526035,
"ASN": 0.9584955205457715,
"ILE": 0.9272799321714542
},
"rmsd_sidechain_dihedrals": {
"PRO": 0.06285737866819453,
"THR": 0.05311931292899792,
"ASP": 0.005168634884525093,
"TRP": 0.005921508959036514,
"TYR": 0.005496364145761572,
"GLU": 0.0005706023498478019,
"LYS": 8.00947840892114e-05,
"GLN": 0.0004558110803385927,
"LEU": 0.005066176671000332,
"ARG": 6.892217686626159e-05,
"SER": 0.055568900499730636,
"HIS": 0.005324455888489882,
"ASN": 0.005303999791959221,
"ILE": 0.005513619500836089
},
"hellinger_distance_sidechain_dihedrals": {
"PRO": 0.7242081570883868,
"THR": 0.6097047932485739,
"ASP": 0.9527799106026725,
"TRP": 0.975117081104262,
"TYR": 0.9553443093873824,
"GLU": 0.9969237928907407,
"LYS": 0.9978726013567296,
"GLN": 0.9962167242683956,
"LEU": 0.9891403447778648,
"ARG": 0.9981500654850088,
"SER": 0.7665580812884062,
"HIS": 1.0,
"ASN": 0.9906717247314041,
"ILE": 1.0
},
"outliers_ratio_backbone_dihedrals": {
"PRO": 0.11666666666666668,
"THR": 0.01,
"ASP": 0.0,
"TRP": 0.0,
"GLY": 0.011555555555555555,
"TYR": 0.0,
"GLU": 0.04,
"LYS": 0.0,
"GLN": 0.0,
"LEU": 0.004,
"ARG": 0.0,
"SER": 0.18,
"ALA": 0.0,
"HIS": 0.36,
"ASN": 0.28,
"ILE": 0.0
},
"outliers_ratio_sidechain_dihedrals": {
"PRO": 0.0,
"THR": 0.0,
"ASP": 0.46,
"TRP": 0.0,
"TYR": 0.5,
"GLU": 0.28,
"LYS": 0.52,
"GLN": 0.02,
"LEU": 0.112,
"ARG": 0.01,
"SER": 0.01,
"HIS": 0.0,
"ASN": 0.24,
"ILE": 0.04
}
}