Create README.md
Browse files
README.md
ADDED
|
@@ -0,0 +1,20 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
## File description for: Mesculenta_305_v6_PROseq_ISM_LOG2FC.txt.gz
|
| 2 |
+
## Intergenic enhancer regions based on Lozano et al. 2021 (https://pubmed.ncbi.nlm.nih.gov/34499719/)
|
| 3 |
+
## Genome version: Manihot esculenta reference genome v6.1 from Phytozome
|
| 4 |
+
## CHR: Chromosome
|
| 5 |
+
## POS: Physical position (bp)
|
| 6 |
+
## REF: Reference allele
|
| 7 |
+
## ALT: Alternative allele
|
| 8 |
+
## LOG2FC: Log fold change in Intergenic enhancer probability (log2(p_mutated_sequence / p_original_sequence))
|
| 9 |
+
|
| 10 |
+
## File description for: Mesculenta_v6_GeneExpression_ISM_LOG2FC.txt.gz
|
| 11 |
+
## Gene expression prediction based on: Wilson et al. 2016 (https://pubmed.ncbi.nlm.nih.gov/28116755/)
|
| 12 |
+
## Genome version: Manihot esculenta reference genome v6 from Ensembl 56
|
| 13 |
+
## CHR: Chromosome
|
| 14 |
+
## POS: Physical position (bp)
|
| 15 |
+
## REF: Reference allele
|
| 16 |
+
## ALT: Alternative allele
|
| 17 |
+
## GENE: Gene ID
|
| 18 |
+
## STRAND: Gene strand
|
| 19 |
+
## TISSUE: Tissue type (Acronyms detailed in Figure 1 of Wilson et al.)
|
| 20 |
+
## LOG2FC: Gene expression log fold change (log2(gene_exp_mutated_sequence / gene_exp_original_sequence))
|