Create README.md
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README.md
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# 🧬 Single-Cell Transcriptomic Insights into Immune Aging in Human PBMCs
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This dataset was extracted from the supplementary tables of the publication:
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> **Title**: Single-cell transcriptomic landscape of human immune aging
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> **Journal**: Cell Research (Nature Publishing Group), 2021
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> **DOI**: [10.1038/s41422-020-00412-6](https://doi.org/10.1038/s41422-020-00412-6)
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---
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## 📂 Dataset Description
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The data was extracted using OCR techniques from PDF tables and saved in `.parquet` format for easy use in data science pipelines. Each row typically represents a gene, cell type, or age group comparison across various immune cell subtypes derived from peripheral blood mononuclear cells (PBMCs).
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Format:
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- **File**: `Immune-Aging-transcriptomic .parquet`
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- **Type**: Tabular dataset
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- **Structure**: Varies per table; gene names, expression levels, p-values, fold changes, and metadata columns may be present.
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---
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## 🔧 Usage Instructions
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### Python (with pandas)
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```python
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import pandas as pd
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df = pd.read_parquet("Immune-Aging-transcriptomic .parquet")
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print(df.head())
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```
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### Use in ML pipelines
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- Input for aging clock models
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- Feature matrix construction for immune cell classification
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- Differential gene expression analysis
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---
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## 💡 Use Cases
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- **Aging Biomarker Discovery**: Identify aging-related genes in immune cells.
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- **Comparative Aging Studies**: Use alongside other datasets like Tabula Muris Senis or sc-ImmuAging.
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- **Model Benchmarking**: Evaluate immune aging clocks using preprocessed features.
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- **Longevity Research**: Investigate immune signatures linked to lifespan and healthspan.
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- **Multi-omics Integration**: Combine with telomere, methylation, or proteomic datasets.
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---
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## 📚 Citation
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If you use this dataset, please cite the original paper:
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> Yang, J., Zheng, Y., Gou, X. et al. Single-cell transcriptomic landscape of human immune aging. *Cell Research* **31**, 1004–1022 (2021).
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> [DOI:10.1038/s41422-020-00412-6](https://doi.org/10.1038/s41422-020-00412-6)
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---
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## 🙏 Acknowledgments
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- Dataset extracted and converted to `.parquet` by **Iris Lee** for use in longevity and immune aging hackathons.
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- Original research by Yang et al., published in *Cell Research*, provided foundational insights into immune aging.
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---
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## 📁 License
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Please refer to the license of the original publication. This conversion is provided for **non-commercial research purposes only**.
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