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README.md
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# sc-ImmuAging – Human PBMC Single Cell Aging Clock Dataset
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This repository contains a summary of tables extracted from the supplementary materials of the publication:
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> **"A single-cell immune clock of human aging"**
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> *Science Advances, 2022*
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> DOI: [10.1126/sciadv.abn5631](https://doi.org/10.1126/sciadv.abn5631)
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The extracted tables are converted into a structured `.parquet` file for easier use in computational pipelines.
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---
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## 📦 Dataset Description
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| Table | Description |
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|------------|-------------------------------------------------------------------------|
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| Table S1 | Summary of scRNA-seq datasets used in this study (public + in-house) |
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| Table S2 | Aging scores and model performance across models and cell types |
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| Table S3 | Gene-level feature importance for predictive aging models |
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These tables provide high-level information to replicate or interpret the immune aging clock models developed using single-cell RNA-seq data from human PBMCs.
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---
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## 🔧 Usage Instructions
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### Load the Parquet File in Python
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```python
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import pandas as pd
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df = pd.read_parquet("sciadv_abn5631_summary.parquet")
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print(df)
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```
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---
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## 💡 Use Cases
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- Investigating immune cell aging patterns in human PBMCs
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- Benchmarking single-cell predictive aging models
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- Training or validating ML models using gene-level feature importance
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- Augmenting multi-omics longevity studies
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---
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## 📚 Citation
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If you use this dataset, please cite:
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> Ma, L., et al. (2022). A single-cell immune clock of human aging. *Science Advances*, 8(46), eabn5631.
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> DOI: [10.1126/sciadv.abn5631](https://doi.org/10.1126/sciadv.abn5631)
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---
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## 🙏 Acknowledgments
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This dataset is derived from the supplementary materials of the original publication.
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Data conversion and formatting by **Iris Lee** for use in longevity-related research and AI health hackathons.
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