Iris8090 commited on
Commit
c2142d7
·
verified ·
1 Parent(s): 8ff2be5

Create README.md

Browse files
Files changed (1) hide show
  1. README.md +59 -0
README.md ADDED
@@ -0,0 +1,59 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # sc-ImmuAging – Human PBMC Single Cell Aging Clock Dataset
2
+
3
+ This repository contains a summary of tables extracted from the supplementary materials of the publication:
4
+
5
+ > **"A single-cell immune clock of human aging"**
6
+ > *Science Advances, 2022*
7
+ > DOI: [10.1126/sciadv.abn5631](https://doi.org/10.1126/sciadv.abn5631)
8
+
9
+ The extracted tables are converted into a structured `.parquet` file for easier use in computational pipelines.
10
+
11
+ ---
12
+
13
+ ## 📦 Dataset Description
14
+
15
+ | Table | Description |
16
+ |------------|-------------------------------------------------------------------------|
17
+ | Table S1 | Summary of scRNA-seq datasets used in this study (public + in-house) |
18
+ | Table S2 | Aging scores and model performance across models and cell types |
19
+ | Table S3 | Gene-level feature importance for predictive aging models |
20
+
21
+ These tables provide high-level information to replicate or interpret the immune aging clock models developed using single-cell RNA-seq data from human PBMCs.
22
+
23
+ ---
24
+
25
+ ## 🔧 Usage Instructions
26
+
27
+ ### Load the Parquet File in Python
28
+
29
+ ```python
30
+ import pandas as pd
31
+
32
+ df = pd.read_parquet("sciadv_abn5631_summary.parquet")
33
+ print(df)
34
+ ```
35
+
36
+ ---
37
+
38
+ ## 💡 Use Cases
39
+
40
+ - Investigating immune cell aging patterns in human PBMCs
41
+ - Benchmarking single-cell predictive aging models
42
+ - Training or validating ML models using gene-level feature importance
43
+ - Augmenting multi-omics longevity studies
44
+
45
+ ---
46
+
47
+ ## 📚 Citation
48
+
49
+ If you use this dataset, please cite:
50
+
51
+ > Ma, L., et al. (2022). A single-cell immune clock of human aging. *Science Advances*, 8(46), eabn5631.
52
+ > DOI: [10.1126/sciadv.abn5631](https://doi.org/10.1126/sciadv.abn5631)
53
+
54
+ ---
55
+
56
+ ## 🙏 Acknowledgments
57
+
58
+ This dataset is derived from the supplementary materials of the original publication.
59
+ Data conversion and formatting by **Iris Lee** for use in longevity-related research and AI health hackathons.