# #!/usr/bin/env python3 # """ # Script to upload multiple datasets to Hugging Face Hub # Uploads all datasets except CTCdataset_COCO to ItsMaxNorm/CytoCTCs # """ # import os # import sys # from pathlib import Path # from huggingface_hub import HfApi, create_repo, upload_folder # import argparse # def upload_datasets_to_hf(base_path, repo_id, token=None): # """ # Upload multiple dataset folders to Hugging Face Hub # Args: # base_path: Path to the directory containing dataset folders # repo_id: Hugging Face repository ID (e.g., "ItsMaxNorm/CytoCTCs") # token: Hugging Face API token (optional if already logged in via CLI) # """ # # Initialize the Hugging Face API # api = HfApi(token=token) # # Define folders to upload (excluding CTCdataset_COCO) # folders_to_upload = ["Bacteria", "CTCDataset", "DEEPCELL"] # # Convert base_path to Path object # base_path = Path(base_path) # # Check if base path exists # if not base_path.exists(): # print(f"Error: Base path {base_path} does not exist!") # return # # Try to create the repository (will not fail if it already exists) # try: # create_repo(repo_id, repo_type="dataset", token=token, exist_ok=True) # print(f"Repository {repo_id} is ready") # except Exception as e: # print(f"Note: {e}") # # Upload each folder # for folder_name in folders_to_upload: # folder_path = base_path / folder_name # if not folder_path.exists(): # print(f"Warning: Folder {folder_path} does not exist, skipping...") # continue # if not folder_path.is_dir(): # print(f"Warning: {folder_path} is not a directory, skipping...") # continue # print(f"\nUploading {folder_name}...") # try: # # Upload the folder to a subdirectory in the repo # upload_folder( # folder_path=str(folder_path), # path_in_repo=folder_name, # This creates a subdirectory in the repo # repo_id=repo_id, # repo_type="dataset", # token=token, # ignore_patterns=["*.pyc", "__pycache__", ".git", ".DS_Store"] # ) # print(f"✓ Successfully uploaded {folder_name}") # except Exception as e: # print(f"✗ Error uploading {folder_name}: {e}") # continue # print(f"\nAll uploads completed! Check your repository at: https://huggingface.co/datasets/{repo_id}") # def main(): # parser = argparse.ArgumentParser(description="Upload datasets to Hugging Face Hub") # parser.add_argument( # "--path", # type=str, # default="/l/users/sahal.mullappilly/Komal/documents/Cell", # help="Base path containing the dataset folders" # ) # parser.add_argument( # "--repo", # type=str, # default="ItsMaxNorm/CytoCTCs", # help="Hugging Face repository ID" # ) # parser.add_argument( # "--token", # type=str, # default=None, # help="Hugging Face API token (optional if logged in via CLI)" # ) # args = parser.parse_args() # # If no token provided, try to get it from environment variable # if args.token is None: # args.token = os.environ.get("HF_TOKEN") # print(f"Starting upload process...") # print(f"Base path: {args.path}") # print(f"Repository: {args.repo}") # print(f"Folders to upload: Bacteria, CTCDataset, DEEPCELL, finetuning") # print(f"Excluding: CTCdataset_COCO") # print("-" * 50) # upload_datasets_to_hf(args.path, args.repo, args.token) if __name__ == "__main__": from huggingface_hub import HfApi api = HfApi() api.upload_large_folder( folder_path="/l/users/sahal.mullappilly/Komal/documents/Cell", repo_id="ItsMaxNorm/CytoCTCs", repo_type="dataset", )