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# Cell Segmentation Masks Dataset
This repository contains NumPy mask files generated using AutoSeg-SAM2 for cell segmentation experiments.
## Dataset Structure
The dataset is organized by experiment type and image number:
```
{experiment_type}/
└── image_{number}/
└── cached_masks.npy
```
## Experiments Included
### Cdx2_Gata6_Oct4
Images: image_2, image_3, image_4
### Sox2_Sox17
Images: image_1, image_2, image_3
## Usage
To load the NumPy mask files:
```python
import numpy as np
# Example for loading a mask file
masks = np.load('Cdx2_Gata6_Oct4/image_1/cached_masks.npy', allow_pickle=True)
```
## File Format
Each `.npy` file contains cell segmentation masks generated using AutoSeg-SAM2, a modification of the Segment Anything Model 2 (SAM2) for automated cell segmentation.
## Citation
If you use this dataset in your research, please cite:
```
@misc{yourarticle2025,
title={Automated Cell Segmentation using SAM2},
author={Kumar, Komal and [Other Authors]},
year={2025},
publisher={ArXiv},
howpublished={\url{https://arxiv.org/abs/xxxx.xxxxx}}
}
```
## License
This dataset is provided under [specify license]. Please refer to the LICENSE file for more details.
## Contact
For questions or inquiries, please contact Komal Kumar.
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