{ "archetype": { "ID": "GS00004", "name": "DNeup5Aca2-6[DGlcpNAcb1-3]DGalpNAca1-OH", "glycam": "DNeup5Aca2-6[DGlcpNAcb1-3]DGalpNAc", "iupac": "GlcNAc(b1-3)[Neu5Ac(a2-6)]GalNAc", "iupac_extended": "β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→6)]-D-GalNAc", "glytoucan": "G71222KY", "wurcs": "WURCS=2.0/3,3,2/[u2112h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_a6-c2", "glycoct": "RES\n1b:b-dgal-HEX-1:5\n2s:n-acetyl\n3b:b-dglc-HEX-1:5\n4s:n-acetyl\n5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\n6s:n-acetyl\nLIN\n1:1d(2+1)2n\n2:1o(3+1)3d\n3:3d(2+1)4n\n4:1o(6+2)5d\n5:5d(5+1)6n\n", "smiles": "O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H]1CO[C@]2(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O2", "oxford": null, "mass": 715.26, "motifs": [ { "motif": "G00036MO", "motif_label": "O-Glycan core 3 fuzzy" } ], "termini": [ "Neu5Ac(a2-6)", "GlcNAc(b1-3)" ], "components": { "GlcNAc": 1, "Neu5Ac": 1, "GalNAc": 1 }, "composition": { "HexNAc": 2, "Neu5Ac": 1 }, "rot_bonds": 13, "hbond_donor": 13, "hbond_acceptor": 19, "entropy": 9.959041911027793, "clusters": { "Cluster 0": 27.29, "Cluster 1": 26.72, "Cluster 2": 23.7, "Cluster 3": 16.72, "Cluster 4": 5.57 }, "coverage_clusters": { "Cluster 0": 32.6742, "Cluster 1": 31.1144, "Cluster 2": 12.7462, "Cluster 3": 8.7441, "Cluster 4": 4.7745, "Cluster 5": 2.4748, "Cluster 6": 2.0973, "Cluster 7": 1.9473, "Cluster 8": 0.9524, "Cluster 9": 0.7949, "Cluster 10": 0.5899, "Cluster 11": 0.5149, "Cluster 12": 0.4675, "Cluster 13": 0.1075 }, "silhouette_scores": { "2": 0.4982786578627117, "3": 0.42706458340012127, "4": 0.3952764653361819, "5": 0.41080011805518785, "6": 0.35845364388090806, "7": 0.37090449033413, "8": 0.38541893038860126 }, "coverage_clusters_per_main": { "0": [ 7 ], "1": [ 8, 9 ], "2": [ 2, 4, 5, 13 ], "3": [ 0, 11 ], "4": [ 1, 3, 6, 10, 12 ] }, "pca_variance": { "explained_variance_ratio": [ 0.2612804911254766, 0.0955544944977664, 0.06636317709475165, 0.04032238817975529, 0.03325887604190297, 0.03021755748319266, 0.02757842082845966, 0.02701828301790658, 0.026020004293872554, 0.019535647710729295 ], "cumulative_variance": [ 0.2612804911254766, 0.356834985623243, 0.42319816271799465, 0.46352055089774996, 0.49677942693965293, 0.5269969844228456, 0.5545754052513052, 0.5815936882692118, 0.6076136925630843, 0.6271493402738135 ], "n_components": 10 }, "length": 2.0, "package": "GROMACS", "forcefield": "GLYCAM_06j", "temperature": 300.0, "pressure": 1.0, "salt": "Neutralising only." }, "alpha": { "ID": "GS00004", "name": "DNeup5Aca2-6[DGlcpNAcb1-3]DGalpNAca1-OH", "glycam": "DNeup5Aca2-6[DGlcpNAcb1-3]DGalpNAca1-OH", "iupac": "GlcNAc(b1-3)[Neu5Ac(a2-6)]GalNAc(a1-", "iupac_extended": "β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→6)]-α-D-GalpNAc-(1→", "glytoucan": "G63334FZ", "wurcs": "WURCS=2.0/3,3,2/[a2112h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_a6-c2" }, "beta": { "ID": "GS00004", "name": "DNeup5Aca2-6[DGlcpNAcb1-3]DGalpNAca1-OH", "glycam": "DNeup5Aca2-6[DGlcpNAcb1-3]DGalpNAcb1-OH", "iupac": "GlcNAc(b1-3)[Neu5Ac(a2-6)]GalNAc(b1-", "iupac_extended": "β-D-GlcpNAc-(1→3)[α-D-Neup5Ac-(2→6)]-β-D-GalpNAc-(1→", "glytoucan": "G11589YK", "wurcs": "WURCS=2.0/3,3,2/[a2112h-1b_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_a6-c2" }, "search_meta": { "common_names": [], "description": "", "keywords": [] } }