{ "archetype": { "ID": "GS00005", "name": "DNeup5Aca2-6DGalpNAca1-3DGalpNAca1-OH", "glycam": "DNeup5Aca2-6DGalpNAca1-3DGalpNAc", "iupac": "Neu5Ac(a2-6)GalNAc(a1-3)GalNAc", "iupac_extended": "α-D-Neup5Ac-(2→6)-α-D-GalpNAc-(1→3)-D-GalNAc", "glytoucan": "G83524RP", "wurcs": "WURCS=2.0/3,3,2/[u2112h_2*NCC/3=O][a2112h-1a_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_b6-c2", "glycoct": "RES\n1b:b-dgal-HEX-1:5\n2s:n-acetyl\n3b:a-dgal-HEX-1:5\n4s:n-acetyl\n5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\n6s:n-acetyl\nLIN\n1:1d(2+1)2n\n2:1o(3+1)3d\n3:3d(2+1)4n\n4:3o(6+2)5d\n5:5d(5+1)6n\n", "smiles": "O1C(O)[C@H](NC(C)=O)[C@@H](O[C@H]2O[C@H](CO[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H](O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H]1CO", "oxford": null, "mass": 715.26, "motifs": [], "termini": [ "Neu5Ac(a2-6)" ], "components": { "GalNAc": 2, "Neu5Ac": 1 }, "composition": { "HexNAc": 2, "Neu5Ac": 1 }, "rot_bonds": 1, "hbond_donor": 5, "hbond_acceptor": 6, "entropy": 10.437557056822666, "clusters": { "Cluster 0": 38.07, "Cluster 1": 26.34, "Cluster 2": 17.14, "Cluster 3": 11.86, "Cluster 4": 6.59 }, "coverage_clusters": { "Cluster 0": 30.42, "Cluster 1": 20.68, "Cluster 2": 15.725, "Cluster 3": 10.875, "Cluster 4": 7.2025, "Cluster 5": 3.79, "Cluster 6": 2.6475, "Cluster 7": 2.52, "Cluster 8": 2.3025, "Cluster 9": 1.0475, "Cluster 10": 0.7925, "Cluster 11": 0.7025, "Cluster 12": 0.6325, "Cluster 13": 0.5325, "Cluster 14": 0.13 }, "silhouette_scores": { "2": 0.3187043996789221, "3": 0.31982210979292497, "4": 0.24633433675227917, "5": 0.2749426973049708, "6": 0.2895656265908472, "7": 0.2758491855439608, "8": 0.2546721962630322 }, "coverage_clusters_per_main": { "0": [ 0, 5, 9 ], "1": [ 4, 8 ], "2": [ 2, 12 ], "3": [ 3, 6, 11, 13 ], "4": [ 1, 7, 10, 14 ] }, "pca_variance": { "explained_variance_ratio": [ 0.209367679156003, 0.08505551091479106, 0.06254711593947809, 0.05899771563749251, 0.04361091192273983, 0.03551842634033918, 0.02997687216352789, 0.02905833833936949, 0.024320594665724716, 0.021562685553891497 ], "cumulative_variance": [ 0.209367679156003, 0.29442319007079404, 0.35697030601027213, 0.41596802164776464, 0.4595789335705045, 0.4950973599108437, 0.5250742320743715, 0.554132570413741, 0.5784531650794656, 0.6000158506333572 ], "n_components": 10 }, "length": 2.0, "package": "AMBER", "forcefield": "GLYCAM_06j", "temperature": 300.0, "pressure": 1.0, "salt": "Neutralising only." }, "alpha": { "ID": "GS00005", "name": "DNeup5Aca2-6DGalpNAca1-3DGalpNAca1-OH", "glycam": "DNeup5Aca2-6DGalpNAca1-3DGalpNAca1-OH", "iupac": "Neu5Ac(a2-6)GalNAc(a1-3)GalNAc(a1-", "iupac_extended": "α-D-Neup5Ac-(2→6)-α-D-GalpNAc-(1→3)-α-D-GalpNAc-(1→", "glytoucan": "G90011PP", "wurcs": "WURCS=2.0/2,3,2/[a2112h-1a_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2/a3-b1_b6-c2" }, "beta": { "ID": "GS00005", "name": "DNeup5Aca2-6DGalpNAca1-3DGalpNAca1-OH", "glycam": "DNeup5Aca2-6DGalpNAca1-3DGalpNAcb1-OH", "iupac": "Neu5Ac(a2-6)GalNAc(a1-3)GalNAc(b1-", "iupac_extended": "α-D-Neup5Ac-(2→6)-α-D-GalpNAc-(1→3)-β-D-GalpNAc-(1→", "glytoucan": "G22701RO", "wurcs": "WURCS=2.0/3,3,2/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1a_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_b6-c2" }, "search_meta": { "common_names": [], "description": "", "keywords": [] } }