{ "archetype": { "ID": "GS00010", "name": "DGalpNAcb1-3DGalpa1-3DGalpb1-4DGlcpa1-OH", "glycam": "DGalpNAcb1-3DGalpa1-3DGalpb1-4DGlcp", "iupac": "GalNAc(b1-3)Gal(a1-3)Gal(b1-4)Glc", "iupac_extended": "β-D-GalpNAc-(1→3)-α-D-Galp-(1→3)-β-D-Galp-(1→4)-D-Glc", "glytoucan": "G00012MO", "wurcs": "WURCS=2.0/4,4,3/[u2122h][a2112h-1b_1-5][a2112h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O]/1-2-3-4/a4-b1_b3-c1_c3-d1", "glycoct": "RES\n1b:b-dglc-HEX-1:5\n2b:b-dgal-HEX-1:5\n3b:a-dgal-HEX-1:5\n4b:b-dgal-HEX-1:5\n5s:n-acetyl\nLIN\n1:1o(4+1)2d\n2:2o(3+1)3d\n3:3o(3+1)4d\n4:4d(2+1)5n\n", "smiles": "O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4NC(C)=O)[C@H]3O)[C@H]2O)[C@H]1CO", "oxford": null, "mass": 707.25, "motifs": [ { "motif": "G24432YB", "motif_label": "a-Gal antigen" } ], "termini": [ "GalNAc(b1-3)" ], "components": { "Gal": 2, "GalNAc": 1, "Glc": 1 }, "composition": { "Hex": 3, "HexNAc": 1 }, "rot_bonds": 11, "hbond_donor": 14, "hbond_acceptor": 21, "entropy": 10.390485634791537, "clusters": { "Cluster 0": 37.27, "Cluster 1": 25.65, "Cluster 2": 17.4, "Cluster 3": 16.64, "Cluster 4": 3.04 }, "coverage_clusters": { "Cluster 0": 25.8, "Cluster 1": 22.3833, "Cluster 2": 14.3167, "Cluster 3": 12.16, "Cluster 4": 8.9933, "Cluster 5": 7.0067, "Cluster 6": 2.5067, "Cluster 7": 2.3967, "Cluster 8": 2.1233, "Cluster 9": 1.0833, "Cluster 10": 0.77, "Cluster 11": 0.2, "Cluster 12": 0.1833, "Cluster 13": 0.0733, "Cluster 14": 0.0033 }, "silhouette_scores": { "2": 0.40993027587801945, "3": 0.28753618251065116, "4": 0.3025062624418661, "5": 0.22931115531130314, "6": 0.22611579506782156, "7": 0.202274876710624, "8": 0.20400928923661882 }, "coverage_clusters_per_main": { "0": [], "1": [ 4, 13, 14 ], "2": [ 1, 2, 3, 6, 8, 9, 11 ], "3": [ 0, 7, 12 ], "4": [ 5, 10 ] }, "pca_variance": { "explained_variance_ratio": [ 0.13112974693516286, 0.10503144186892395, 0.09688326267273123, 0.07670297555477293, 0.06164829882313905, 0.035725517627707086, 0.03125369957377917, 0.023774253976859894, 0.023091782329564388, 0.022434123782899 ], "cumulative_variance": [ 0.13112974693516286, 0.23616118880408682, 0.33304445147681805, 0.40974742703159095, 0.47139572585473, 0.507121243482437, 0.5383749430562162, 0.5621491970330761, 0.5852409793626405, 0.6076751031455395 ], "n_components": 10 }, "length": 1.5, "package": "AMBER", "forcefield": "GLYCAM_06j", "temperature": 300.0, "pressure": 1.0, "salt": "150" }, "alpha": { "ID": "GS00010", "name": "DGalpNAcb1-3DGalpa1-3DGalpb1-4DGlcpa1-OH", "glycam": "DGalpNAcb1-3DGalpa1-3DGalpb1-4DGlcpa1-OH", "iupac": "GalNAc(b1-3)Gal(a1-3)Gal(b1-4)Glc(a1-", "iupac_extended": "β-D-GalpNAc-(1→3)-α-D-Galp-(1→3)-β-D-Galp-(1→4)-α-D-Glcp-(1→", "glytoucan": "G54440EA", "wurcs": "WURCS=2.0/4,4,3/[a2122h-1a_1-5][a2112h-1b_1-5][a2112h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O]/1-2-3-4/a4-b1_b3-c1_c3-d1" }, "beta": { "ID": "GS00010", "name": "DGalpNAcb1-3DGalpa1-3DGalpb1-4DGlcpa1-OH", "glycam": "DGalpNAcb1-3DGalpa1-3DGalpb1-4DGlcpb1-OH", "iupac": "GalNAc(b1-3)Gal(a1-3)Gal(b1-4)Glc(b1-", "iupac_extended": "β-D-GalpNAc-(1→3)-α-D-Galp-(1→3)-β-D-Galp-(1→4)-β-D-Glcp-(1→", "glytoucan": "G57710SU", "wurcs": "WURCS=2.0/4,4,3/[a2122h-1b_1-5][a2112h-1b_1-5][a2112h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O]/1-2-3-4/a4-b1_b3-c1_c3-d1" }, "search_meta": { "common_names": [], "description": "", "keywords": [] } }