{ "archetype": { "ID": "GS00012", "name": "DNeup5Aca2-6DGalpNAca1-3DGlcpNAca1-OH", "glycam": "DNeup5Aca2-6DGalpNAca1-3DGlcpNAc", "iupac": "Neu5Ac(a2-6)GalNAc(a1-3)GlcNAc", "iupac_extended": "α-D-Neup5Ac-(2→6)-α-D-GalpNAc-(1→3)-D-GlcNAc", "glytoucan": "G18712XX", "wurcs": "WURCS=2.0/3,3,2/[u2122h_2*NCC/3=O][a2112h-1a_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_b6-c2", "glycoct": "RES\n1b:b-dglc-HEX-1:5\n2s:n-acetyl\n3b:a-dgal-HEX-1:5\n4s:n-acetyl\n5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\n6s:n-acetyl\nLIN\n1:1d(2+1)2n\n2:1o(3+1)3d\n3:3d(2+1)4n\n4:3o(6+2)5d\n5:5d(5+1)6n\n", "smiles": "O1C(O)[C@H](NC(C)=O)[C@@H](O[C@H]2O[C@H](CO[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H](O)[C@H](O)[C@H]2NC(C)=O)[C@H](O)[C@H]1CO", "oxford": null, "mass": 715.26, "motifs": [], "termini": [ "Neu5Ac(a2-6)" ], "components": { "Neu5Ac": 1, "GalNAc": 1, "GlcNAc": 1 }, "composition": { "HexNAc": 2, "Neu5Ac": 1 }, "rot_bonds": 1, "hbond_donor": 5, "hbond_acceptor": 6, "entropy": 9.953736646404774, "clusters": { "Cluster 0": 40.41, "Cluster 1": 26.52, "Cluster 2": 14.62, "Cluster 3": 12.53, "Cluster 4": 5.93 }, "coverage_clusters": { "Cluster 0": 30.445, "Cluster 1": 24.6525, "Cluster 2": 18.84, "Cluster 3": 9.76, "Cluster 4": 3.52, "Cluster 5": 3.255, "Cluster 6": 2.61, "Cluster 7": 2.335, "Cluster 8": 1.39, "Cluster 9": 1.0525, "Cluster 10": 0.95, "Cluster 11": 0.63, "Cluster 12": 0.4775, "Cluster 13": 0.0825 }, "silhouette_scores": { "2": 0.43802846729829314, "3": 0.43168473891307074, "4": 0.45643334140423014, "5": 0.3853843908691513, "6": 0.28814897826772934, "7": 0.29404207313112773, "8": 0.3470734904603066 }, "coverage_clusters_per_main": { "0": [ 8 ], "1": [ 0 ], "2": [ 2, 5, 9 ], "3": [ 1, 3, 6, 7, 10, 12, 13 ], "4": [ 4, 11 ] }, "pca_variance": { "explained_variance_ratio": [ 0.18303653862101327, 0.09809360600146419, 0.08098267698865445, 0.057904579686617455, 0.04890639028455224, 0.0324673593220714, 0.031907719894417624, 0.030066622659402725, 0.027360951236409033, 0.02070132122685705 ], "cumulative_variance": [ 0.18303653862101327, 0.28113014462247743, 0.3621128216111319, 0.42001740129774934, 0.4689237915823016, 0.5013911509043729, 0.5332988707987906, 0.5633654934581933, 0.5907264446946023, 0.6114277659214594 ], "n_components": 10 }, "length": 2.0, "package": "AMBER", "forcefield": "GLYCAM_06j", "temperature": 300.0, "pressure": 1.0, "salt": "Neutralising only." }, "alpha": { "ID": "GS00012", "name": "DNeup5Aca2-6DGalpNAca1-3DGlcpNAca1-OH", "glycam": "DNeup5Aca2-6DGalpNAca1-3DGlcpNAca1-OH", "iupac": "Neu5Ac(a2-6)GalNAc(a1-3)GlcNAc(a1-", "iupac_extended": "α-D-Neup5Ac-(2→6)-α-D-GalpNAc-(1→3)-α-D-GlcpNAc-(1→", "glytoucan": "G92980RJ", "wurcs": "WURCS=2.0/3,3,2/[a2122h-1a_1-5_2*NCC/3=O][a2112h-1a_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_b6-c2" }, "beta": { "ID": "GS00012", "name": "DNeup5Aca2-6DGalpNAca1-3DGlcpNAca1-OH", "glycam": "DNeup5Aca2-6DGalpNAca1-3DGlcpNAcb1-OH", "iupac": "Neu5Ac(a2-6)GalNAc(a1-3)GlcNAc(b1-", "iupac_extended": "α-D-Neup5Ac-(2→6)-α-D-GalpNAc-(1→3)-β-D-GlcpNAc-(1→", "glytoucan": "G56098KF", "wurcs": "WURCS=2.0/3,3,2/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1a_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_b6-c2" }, "search_meta": { "common_names": [], "description": "", "keywords": [] } }