{ "archetype": { "ID": "GS00025", "name": "DFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH", "glycam": "DFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcp", "iupac": "D-Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc", "iupac_extended": "α-D-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-D-Glc", "glytoucan": "G05596LB", "wurcs": "WURCS=2.0/4,5,4/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112m-1a_1-5]/1-2-3-2-4/a4-b1_b3-c1_c3-d1_d2-e1", "glycoct": null, "smiles": "O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O[C@H]5O[C@H](C)[C@H](O)[C@H](O)[C@H]5O)[C@H]3NC(C)=O)[C@H]2O)[C@H]1CO", "oxford": null, "mass": 853.31, "motifs": [ { "motif": "G00056MO", "motif_label": "Type 1 LN" } ], "termini": [ "D-Fuc(a1-2)" ], "components": { "Gal": 2, "D-Fuc": 1, "GlcNAc": 1, "Glc": 1 }, "composition": { "Hex": 3, "HexNAc": 1, "dHex": 1 }, "rot_bonds": 13, "hbond_donor": 16, "hbond_acceptor": 25, "entropy": 9.864105534261101, "clusters": { "Cluster 0": 45.09, "Cluster 1": 27.17, "Cluster 2": 14.16, "Cluster 3": 9.37, "Cluster 4": 4.21 }, "coverage_clusters": { "Cluster 0": 35.1265, "Cluster 1": 23.401, "Cluster 2": 15.7118, "Cluster 3": 11.2522, "Cluster 4": 6.5693, "Cluster 5": 1.8265, "Cluster 6": 1.5098, "Cluster 7": 1.3965, "Cluster 8": 1.0099, "Cluster 9": 0.9632, "Cluster 10": 0.5099, "Cluster 11": 0.4366, "Cluster 12": 0.2866 }, "silhouette_scores": { "2": 0.6791524690209388, "3": 0.7139811713523586, "4": 0.5416219425615237, "5": 0.4359860359490358, "6": 0.39113425192038115, "7": 0.34720253143267416, "8": 0.33135688793247603 }, "coverage_clusters_per_main": { "0": [ 2, 4, 6, 12 ], "1": [ 0, 8, 11 ], "2": [ 1, 3, 5, 10 ], "3": [], "4": [ 7, 9 ] }, "pca_variance": { "explained_variance_ratio": [ 0.2489544876000775, 0.11958837052554025, 0.07332922370429483, 0.060456044452582736, 0.043722399371741126, 0.032453965816462205, 0.02708914267931489, 0.023574132587717164, 0.01936750637730013, 0.017023222821370563 ], "cumulative_variance": [ 0.2489544876000775, 0.3685428581256177, 0.44187208182991256, 0.5023281262824952, 0.5460505256542364, 0.5785044914706986, 0.6055936341500134, 0.6291677667377306, 0.6485352731150307, 0.6655584959364013 ], "n_components": 10 }, "length": 1.5, "package": "GROMACS", "forcefield": "GLYCAM_06j", "temperature": 300.0, "pressure": 1.0, "salt": "150" }, "alpha": { "ID": "GS00025", "name": "DFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH", "glycam": "DFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH", "iupac": "D-Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc(a1-", "iupac_extended": "α-D-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-α-D-Glcp-(1→", "glytoucan": "G30502VG", "wurcs": "WURCS=2.0/4,5,4/[a2122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112m-1a_1-5]/1-2-3-2-4/a4-b1_b3-c1_c3-d1_d2-e1" }, "beta": { "ID": "GS00025", "name": "DFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpa1-OH", "glycam": "DFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpb1-OH", "iupac": "D-Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc(b1-", "iupac_extended": "α-D-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-Glcp-(1→", "glytoucan": "G92238TK", "wurcs": "WURCS=2.0/4,5,4/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112m-1a_1-5]/1-2-3-2-4/a4-b1_b3-c1_c3-d1_d2-e1" }, "search_meta": { "common_names": [], "description": "", "keywords": [] } }