{ "archetype": { "ID": "GS00028", "name": "DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH", "glycam": "DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc", "iupac": "GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc", "iupac_extended": "β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc", "glytoucan": "G87309GS", "wurcs": "WURCS=2.0/5,9,8/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-2-3-4-2-4-2-2-5/a4-b1_a6-i1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1_f6-h1", "glycoct": "RES\n1b:b-dglc-HEX-1:5\n2s:n-acetyl\n3b:b-dglc-HEX-1:5\n4s:n-acetyl\n5b:b-dman-HEX-1:5\n6b:a-dman-HEX-1:5\n7b:b-dglc-HEX-1:5\n8s:n-acetyl\n9b:a-dman-HEX-1:5\n10b:b-dglc-HEX-1:5\n11s:n-acetyl\n12b:b-dglc-HEX-1:5\n13s:n-acetyl\n14b:a-lgal-HEX-1:5|6:d\nLIN\n1:1d(2+1)2n\n2:1o(4+1)3d\n3:3d(2+1)4n\n4:3o(4+1)5d\n5:5o(3+1)6d\n6:6o(2+1)7d\n7:7d(2+1)8n\n8:5o(6+1)9d\n9:9o(2+1)10d\n10:10d(2+1)11n\n11:9o(6+1)12d\n12:12d(2+1)13n\n13:1o(6+1)14d\n", "smiles": "O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@H]1CO[C@@H]2O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O", "oxford": "FA3", "mass": 1665.62, "motifs": [ { "motif": "G00030MO", "motif_label": "N-Glycan complex" } ], "termini": [ "GlcNAc(b1-2)", "Fuc(a1-6)", "GlcNAc(b1-6)" ], "components": { "GlcNAc": 5, "Man": 3, "Fuc": 1 }, "composition": { "Hex": 3, "HexNAc": 5, "dHex": 1 }, "rot_bonds": 29, "hbond_donor": 28, "hbond_acceptor": 45, "entropy": 13.177822072351569, "clusters": { "Cluster 0": 37.71, "Cluster 1": 23.55, "Cluster 2": 20.19, "Cluster 3": 16.2, "Cluster 4": 2.36 }, "coverage_clusters": { "Cluster 0": 19.485, "Cluster 1": 14.2475, "Cluster 2": 14.0175, "Cluster 3": 12.5525, "Cluster 4": 8.4375, "Cluster 5": 6.2575, "Cluster 6": 5.565, "Cluster 7": 4.7625, "Cluster 8": 3.5275, "Cluster 9": 1.795, "Cluster 10": 1.5975, "Cluster 11": 1.43, "Cluster 12": 1.315, "Cluster 13": 1.2225, "Cluster 14": 1.1275, "Cluster 15": 0.6375, "Cluster 16": 0.56, "Cluster 17": 0.325, "Cluster 18": 0.2975, "Cluster 19": 0.2475, "Cluster 20": 0.1725, "Cluster 21": 0.1625, "Cluster 22": 0.1475, "Cluster 23": 0.075, "Cluster 24": 0.0275, "Cluster 25": 0.0075 }, "silhouette_scores": { "2": 0.39396037508507215, "3": 0.4003864077136917, "4": 0.31660669985534795, "5": 0.32120979460731447, "6": 0.26027286838142566, "7": 0.2582030226519418, "8": 0.2431629844465906 }, "coverage_clusters_per_main": { "0": [ 0, 6, 9, 12, 20 ], "1": [ 1, 3, 7, 17, 19, 24 ], "2": [ 13, 18 ], "3": [ 2, 8, 11, 14, 15 ], "4": [ 4, 5, 10, 16, 21, 22, 23, 25 ] }, "pca_variance": { "explained_variance_ratio": [ 0.16435351214634783, 0.08005812440067445, 0.06177761366546215, 0.054544545514404845, 0.05053398818224614, 0.04557588339036639, 0.03670351765213458, 0.031751056716865234, 0.028617413757089243, 0.02277162591157004 ], "cumulative_variance": [ 0.16435351214634783, 0.24441163654702228, 0.30618925021248444, 0.3607337957268893, 0.41126778390913543, 0.4568436672995018, 0.4935471849516364, 0.5252982416685017, 0.553915655425591, 0.576687281337161 ], "n_components": 10 }, "length": 4.0, "package": "AMBER", "forcefield": "GLYCAM_06j", "temperature": 300.0, "pressure": 1.0, "salt": "200" }, "alpha": { "ID": "GS00028", "name": "DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH", "glycam": "DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH", "iupac": "GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1-", "iupac_extended": "β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→", "glytoucan": "G63038RA", "wurcs": "WURCS=2.0/5,9,8/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-2-3-4-2-4-2-2-5/a4-b1_a6-i1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1_f6-h1" }, "beta": { "ID": "GS00028", "name": "DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH", "glycam": "DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH", "iupac": "GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1-", "iupac_extended": "β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→", "glytoucan": "G80393PG", "wurcs": "WURCS=2.0/4,9,8/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-1-2-3-1-3-1-1-4/a4-b1_a6-i1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1_f6-h1" }, "search_meta": { "common_names": [ "FA3" ], "description": "", "keywords": [ "Fucosylated N-Glycan", "N-Glycan" ] } }