{ "archetype": { "ID": "GS00029", "name": "DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH", "glycam": "DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAc", "iupac": "GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc", "iupac_extended": "β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc", "glytoucan": "G81253FL", "wurcs": "WURCS=2.0/4,8,7/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-2-3-4-2-4-2-2/a4-b1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1_f6-h1", "glycoct": "RES\n1b:b-dglc-HEX-1:5\n2s:n-acetyl\n3b:b-dglc-HEX-1:5\n4s:n-acetyl\n5b:b-dman-HEX-1:5\n6b:a-dman-HEX-1:5\n7b:b-dglc-HEX-1:5\n8s:n-acetyl\n9b:a-dman-HEX-1:5\n10b:b-dglc-HEX-1:5\n11s:n-acetyl\n12b:b-dglc-HEX-1:5\n13s:n-acetyl\nLIN\n1:1d(2+1)2n\n2:1o(4+1)3d\n3:3d(2+1)4n\n4:3o(4+1)5d\n5:5o(3+1)6d\n6:6o(2+1)7d\n7:7d(2+1)8n\n8:5o(6+1)9d\n9:9o(2+1)10d\n10:10d(2+1)11n\n11:9o(6+1)12d\n12:12d(2+1)13n\n", "smiles": "O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@H]1CO", "oxford": "A3", "mass": 1519.57, "motifs": [ { "motif": "G00030MO", "motif_label": "N-Glycan complex" } ], "termini": [ "GlcNAc(b1-2)", "GlcNAc(b1-6)" ], "components": { "GlcNAc": 5, "Man": 3 }, "composition": { "Hex": 3, "HexNAc": 5 }, "rot_bonds": 27, "hbond_donor": 26, "hbond_acceptor": 41, "entropy": 12.956709251640167, "clusters": { "Cluster 0": 31.96, "Cluster 1": 25.85, "Cluster 2": 19.13, "Cluster 3": 17.1, "Cluster 4": 5.96 }, "coverage_clusters": { "Cluster 0": 17.495, "Cluster 1": 14.6975, "Cluster 2": 13.215, "Cluster 3": 12.085, "Cluster 4": 11.14, "Cluster 5": 4.71, "Cluster 6": 4.2475, "Cluster 7": 3.8, "Cluster 8": 3.295, "Cluster 9": 3.19, "Cluster 10": 3.1775, "Cluster 11": 1.4525, "Cluster 12": 1.425, "Cluster 13": 1.3175, "Cluster 14": 1.2925, "Cluster 15": 1.0875, "Cluster 16": 1.0825, "Cluster 17": 0.48, "Cluster 18": 0.2575, "Cluster 19": 0.2125, "Cluster 20": 0.195, "Cluster 21": 0.05, "Cluster 22": 0.05, "Cluster 23": 0.025, "Cluster 24": 0.02 }, "silhouette_scores": { "2": 0.3649853363008445, "3": 0.31503741013946135, "4": 0.2986143685422183, "5": 0.22865190856506723, "6": 0.20085141758885466, "7": 0.2708115931761619, "8": 0.2584804399595273 }, "coverage_clusters_per_main": { "0": [ 1, 2, 4, 16, 21 ], "1": [ 5, 6, 7, 12, 15, 22 ], "2": [ 0, 9, 11, 17, 18, 19, 20, 23, 24 ], "3": [], "4": [ 3, 8, 10, 13, 14 ] }, "pca_variance": { "explained_variance_ratio": [ 0.1564655475403692, 0.09905686946408852, 0.07015681797507145, 0.05728500654649044, 0.05288948601455667, 0.04359263390539449, 0.028854905266303896, 0.026946262908326083, 0.025285185781855478, 0.021781794198125457 ], "cumulative_variance": [ 0.1564655475403692, 0.2555224170044577, 0.32567923497952916, 0.3829642415260196, 0.4358537275405763, 0.47944636144597075, 0.5083012667122746, 0.5352475296206007, 0.5605327154024562, 0.5823145096005816 ], "n_components": 10 }, "length": 4.5, "package": "AMBER", "forcefield": "GLYCAM_06j", "temperature": 300.0, "pressure": 1.0, "salt": "200" }, "alpha": { "ID": "GS00029", "name": "DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH", "glycam": "DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH", "iupac": "GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1-", "iupac_extended": "β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→", "glytoucan": "G23849BG", "wurcs": "WURCS=2.0/4,8,7/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-2-3-4-2-4-2-2/a4-b1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1_f6-h1" }, "beta": { "ID": "GS00029", "name": "DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH", "glycam": "DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH", "iupac": "GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1-", "iupac_extended": "β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→", "glytoucan": "G10219AA", "wurcs": "WURCS=2.0/3,8,7/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-1-3-1-1/a4-b1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1_f6-h1" }, "search_meta": { "common_names": [ "A3" ], "description": "", "keywords": [ "N-Glycan" ] } }