{ "archetype": { "ID": "GS00030", "name": "DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-4[DGlcpNAcb1-2]DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH", "glycam": "DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-4[DGlcpNAcb1-2]DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAc", "iupac": "GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc", "iupac_extended": "β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc", "glytoucan": "G90950UC", "wurcs": "WURCS=2.0/4,9,8/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-2-3-4-2-2-4-2-2/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_d4-f1_g2-h1_g6-i1", "glycoct": "RES\n1b:b-dglc-HEX-1:5\n2s:n-acetyl\n3b:b-dglc-HEX-1:5\n4s:n-acetyl\n5b:b-dman-HEX-1:5\n6b:a-dman-HEX-1:5\n7b:b-dglc-HEX-1:5\n8s:n-acetyl\n9b:b-dglc-HEX-1:5\n10s:n-acetyl\n11b:a-dman-HEX-1:5\n12b:b-dglc-HEX-1:5\n13s:n-acetyl\n14b:b-dglc-HEX-1:5\n15s:n-acetyl\nLIN\n1:1d(2+1)2n\n2:1o(4+1)3d\n3:3d(2+1)4n\n4:3o(4+1)5d\n5:5o(3+1)6d\n6:6o(2+1)7d\n7:7d(2+1)8n\n8:6o(4+1)9d\n9:9d(2+1)10n\n10:5o(6+1)11d\n11:11o(2+1)12d\n12:12d(2+1)13n\n13:11o(6+1)14d\n14:14d(2+1)15n\n", "smiles": "O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@H]1CO", "oxford": "A4", "mass": 1722.65, "motifs": [ { "motif": "G00030MO", "motif_label": "N-Glycan complex" } ], "termini": [ "GlcNAc(b1-2)", "GlcNAc(b1-6)", "GlcNAc(b1-4)" ], "components": { "GlcNAc": 6, "Man": 3 }, "composition": { "Hex": 3, "HexNAc": 6 }, "rot_bonds": 31, "hbond_donor": 29, "hbond_acceptor": 46, "entropy": 12.940163086335877, "clusters": { "Cluster 0": 27.32, "Cluster 1": 27.15, "Cluster 2": 19.17, "Cluster 3": 16.23, "Cluster 4": 10.13 }, "coverage_clusters": { "Cluster 0": 11.555, "Cluster 1": 11.16, "Cluster 2": 9.9525, "Cluster 3": 8.3575, "Cluster 4": 8.005, "Cluster 5": 7.88, "Cluster 6": 5.675, "Cluster 7": 4.515, "Cluster 8": 3.9, "Cluster 9": 3.635, "Cluster 10": 3.4475, "Cluster 11": 3.2325, "Cluster 12": 2.5875, "Cluster 13": 2.565, "Cluster 14": 2.23, "Cluster 15": 2.03, "Cluster 16": 1.725, "Cluster 17": 1.6975, "Cluster 18": 1.5475, "Cluster 19": 1.205, "Cluster 20": 0.9175, "Cluster 21": 0.7025, "Cluster 22": 0.6675, "Cluster 23": 0.5025, "Cluster 24": 0.3075 }, "silhouette_scores": { "2": 0.34413179515103104, "3": 0.369044820146182, "4": 0.3570590339757086, "5": 0.3280269470186557, "6": 0.3437516365052596, "7": 0.28647062916586835, "8": 0.3488409783427711 }, "coverage_clusters_per_main": { "0": [ 1, 5, 14, 18, 19, 24 ], "1": [ 7, 15, 21 ], "2": [ 3, 9, 13, 22 ], "3": [ 0, 6, 10, 12, 20 ], "4": [ 2, 4, 8, 11, 16, 17, 23 ] }, "pca_variance": { "explained_variance_ratio": [ 0.14234873332559297, 0.09183704544880714, 0.07502047161668299, 0.05827786048939353, 0.05174998448728829, 0.04502039236490608, 0.037836199870871536, 0.033154725478519616, 0.0298657898391114, 0.021929453620254974 ], "cumulative_variance": [ 0.14234873332559297, 0.2341857787744001, 0.30920625039108307, 0.3674841108804766, 0.4192340953677649, 0.464254487732671, 0.5020906876035425, 0.5352454130820621, 0.5651112029211734, 0.5870406565414285 ], "n_components": 10 }, "length": 4.0, "package": "AMBER", "forcefield": "GLYCAM_06j", "temperature": 300.0, "pressure": 1.0, "salt": "200" }, "alpha": { "ID": "GS00030", "name": "DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-4[DGlcpNAcb1-2]DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH", "glycam": "DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-4[DGlcpNAcb1-2]DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH", "iupac": "GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1-", "iupac_extended": "β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→", "glytoucan": "G62941VF", "wurcs": "WURCS=2.0/4,9,8/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-2-3-4-2-2-4-2-2/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_d4-f1_g2-h1_g6-i1" }, "beta": { "ID": "GS00030", "name": "DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-4[DGlcpNAcb1-2]DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH", "glycam": "DGlcpNAcb1-6[DGlcpNAcb1-2]DManpa1-6[DGlcpNAcb1-4[DGlcpNAcb1-2]DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH", "iupac": "GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[GlcNAc(b1-2)[GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1-", "iupac_extended": "β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→4)]-α-D-Manp-(1→3)[β-D-GlcpNAc-(1→2)[β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→", "glytoucan": "G20030CU", "wurcs": "WURCS=2.0/3,9,8/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-1-1-3-1-1/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_d4-f1_g2-h1_g6-i1" }, "search_meta": { "common_names": [ "A4" ], "description": "", "keywords": [ "N-Glycan" ] } }