{ "archetype": { "ID": "GS00031", "name": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH", "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAc", "iupac": "Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc", "iupac_extended": "β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-D-GlcNAc", "glytoucan": "G47763TG", "wurcs": "WURCS=2.0/7,13,12/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-6-2-6-7/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_h6-k1_i4-j1_k4-l1_l3-m2", "glycoct": "RES\n1b:b-dglc-HEX-1:5\n2s:n-acetyl\n3b:b-dglc-HEX-1:5\n4s:n-acetyl\n5b:b-dman-HEX-1:5\n6b:a-dman-HEX-1:5\n7b:b-dglc-HEX-1:5\n8s:n-acetyl\n9b:a-lgal-HEX-1:5|6:d\n10b:b-dgal-HEX-1:5\n11b:a-dman-HEX-1:5\n12b:b-dglc-HEX-1:5\n13s:n-acetyl\n14b:b-dgal-HEX-1:5\n15b:b-dglc-HEX-1:5\n16s:n-acetyl\n17b:b-dgal-HEX-1:5\n18b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\n19s:n-acetyl\nLIN\n1:1d(2+1)2n\n2:1o(4+1)3d\n3:3d(2+1)4n\n4:3o(4+1)5d\n5:5o(3+1)6d\n6:6o(2+1)7d\n7:7d(2+1)8n\n8:7o(3+1)9d\n9:7o(4+1)10d\n10:5o(6+1)11d\n11:11o(2+1)12d\n12:12d(2+1)13n\n13:12o(4+1)14d\n14:11o(6+1)15d\n15:15d(2+1)16n\n16:15o(4+1)17d\n17:17o(3+2)18d\n18:18d(5+1)19n\n", "smiles": "O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O[C@]7(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O7)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O[C@@H]6O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]6O)[C@H]5NC(C)=O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@H]1CO", "oxford": null, "mass": 2442.88, "motifs": [], "termini": [ "Fuc(a1-3)", "Gal(b1-4)", "Neu5Ac(a2-3)" ], "components": { "GlcNAc": 5, "Gal": 3, "Man": 3, "Neu5Ac": 1, "Fuc": 1 }, "composition": { "Hex": 6, "HexNAc": 5, "Neu5Ac": 1, "dHex": 1 }, "rot_bonds": 1, "hbond_donor": 5, "hbond_acceptor": 6, "entropy": 14.055680155472263, "clusters": { "Cluster 0": 31.0, "Cluster 1": 20.89, "Cluster 2": 16.97, "Cluster 3": 15.68, "Cluster 4": 15.47 }, "coverage_clusters": { "Cluster 0": 11.4556, "Cluster 1": 7.4667, "Cluster 2": 6.8333, "Cluster 3": 6.3111, "Cluster 4": 5.4444, "Cluster 5": 5.1, "Cluster 6": 4.9889, "Cluster 7": 4.5111, "Cluster 8": 4.3, "Cluster 9": 4.2556, "Cluster 10": 3.8444, "Cluster 11": 3.7889, "Cluster 12": 3.3333, "Cluster 13": 2.9667, "Cluster 14": 2.7111, "Cluster 15": 2.4556, "Cluster 16": 2.4556, "Cluster 17": 2.4, "Cluster 18": 2.2333, "Cluster 19": 2.2222, "Cluster 20": 1.7333, "Cluster 21": 1.6111, "Cluster 22": 1.5222, "Cluster 23": 1.4333, "Cluster 24": 1.1889, "Cluster 25": 0.9778, "Cluster 26": 0.8, "Cluster 27": 0.6667, "Cluster 28": 0.4889, "Cluster 29": 0.4, "Cluster 30": 0.1 }, "silhouette_scores": { "2": 0.3368927570368608, "3": 0.39846770702986645, "4": 0.34193104136010305, "5": 0.3173852753637585, "6": 0.3102974202405091, "7": 0.2869126846282046, "8": 0.267192321548737 }, "coverage_clusters_per_main": { "0": [ 1, 7, 14, 29 ], "1": [ 3, 9, 10, 21, 23, 25, 28 ], "2": [ 5, 8, 13, 15, 17, 18, 24, 30 ], "3": [ 0, 4, 11, 12, 16, 19, 22, 26 ], "4": [ 2, 6, 20, 27 ] }, "pca_variance": { "explained_variance_ratio": [ 0.1766034616239199, 0.11704830532354467, 0.07625645002274967, 0.06205077015765044, 0.04971046870674511, 0.04177807539282208, 0.032829044229663956, 0.029925566135801905, 0.023334364228512466, 0.020749868288538677 ], "cumulative_variance": [ 0.1766034616239199, 0.2936517669474646, 0.36990821697021425, 0.4319589871278647, 0.4816694558346098, 0.5234475312274318, 0.5562765754570957, 0.5862021415928976, 0.6095365058214101, 0.6302863741099487 ], "n_components": 10 }, "length": 4.5, "package": "AMBER", "forcefield": "GLYCAM_06j", "temperature": 300.0, "pressure": 1.0, "salt": "200" }, "alpha": { "ID": "GS00031", "name": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH", "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-OH", "iupac": "Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc(a1-", "iupac_extended": "β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-α-D-GlcpNAc-(1→", "glytoucan": "G28954HQ", "wurcs": "WURCS=2.0/7,13,12/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-6-2-6-7/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_h6-k1_i4-j1_k4-l1_l3-m2" }, "beta": { "ID": "GS00031", "name": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH", "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH", "iupac": "Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-2)]Man(a1-6)[Fuc(a1-3)[Gal(b1-4)]GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1-", "iupac_extended": "β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)[α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→6)]-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)-β-D-GlcpNAc-(1→", "glytoucan": "G52593LK", "wurcs": "WURCS=2.0/6,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-3-1-5-1-5-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_h6-k1_i4-j1_k4-l1_l3-m2" }, "search_meta": { "common_names": [], "description": "", "keywords": [ "Biantennary N-Glycan", "Complex N-Glycan", "N-Glycan" ] } }