{ "archetype": { "ID": "GS00035", "name": "LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpNAca1-OH", "glycam": "LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpNAc", "iupac": "Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)GlcNAc", "iupac_extended": "α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-D-GlcNAc", "glytoucan": "G30404IO", "wurcs": "WURCS=2.0/4,5,4/[u2122h_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4/a4-b1_b3-c1_c3-d1_d2-e1", "glycoct": "RES\n1b:b-dglc-HEX-1:5\n2s:n-acetyl\n3b:b-dgal-HEX-1:5\n4b:b-dglc-HEX-1:5\n5s:n-acetyl\n6b:b-dgal-HEX-1:5\n7b:a-lgal-HEX-1:5|6:d\nLIN\n1:1d(2+1)2n\n2:1o(4+1)3d\n3:3o(3+1)4d\n4:4d(2+1)5n\n5:4o(3+1)6d\n6:6o(2+1)7d\n", "smiles": "O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O[C@@H]5O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]5O)[C@H]3NC(C)=O)[C@H]2O)[C@H]1CO", "oxford": null, "mass": 894.33, "motifs": [], "termini": [ "Fuc(a1-2)" ], "components": { "Gal": 2, "GlcNAc": 2, "Fuc": 1 }, "composition": { "Hex": 2, "HexNAc": 2, "dHex": 1 }, "rot_bonds": 1, "hbond_donor": 5, "hbond_acceptor": 6, "entropy": 11.90237430757286, "clusters": { "Cluster 0": 29.69, "Cluster 1": 29.66, "Cluster 2": 23.48, "Cluster 3": 8.97, "Cluster 4": 8.2 }, "coverage_clusters": { "Cluster 0": 34.9498, "Cluster 1": 23.0744, "Cluster 2": 16.0684, "Cluster 3": 9.5957, "Cluster 4": 5.7761, "Cluster 5": 3.8929, "Cluster 6": 1.7698, "Cluster 7": 1.3465, "Cluster 8": 0.9099, "Cluster 9": 0.8632, "Cluster 10": 0.6433, "Cluster 11": 0.3066, "Cluster 12": 0.2733, "Cluster 13": 0.23, "Cluster 14": 0.17, "Cluster 15": 0.0367, "Cluster 16": 0.0267, "Cluster 17": 0.0267, "Cluster 18": 0.0233, "Cluster 19": 0.0167 }, "silhouette_scores": { "2": 0.2940470224596923, "3": 0.26929230939167603, "4": 0.23821253624477715, "5": 0.2221826003347159, "6": 0.2129889081378477, "7": 0.2094506801085129, "8": 0.21179040090095616 }, "coverage_clusters_per_main": { "0": [ 2, 4, 8, 10, 18 ], "1": [ 0, 13 ], "2": [ 7, 17 ], "3": [ 12, 16, 19 ], "4": [ 1, 3, 5, 6, 9, 11, 14, 15 ] }, "pca_variance": { "explained_variance_ratio": [ 0.15562962690046198, 0.10274289974598987, 0.059443124765673594, 0.056244277504099646, 0.04872210113079528, 0.03490917757727599, 0.03066596019273209, 0.02924910685334393, 0.025565584184811856, 0.01930769573014989 ], "cumulative_variance": [ 0.15562962690046198, 0.25837252664645183, 0.3178156514121254, 0.3740599289162251, 0.42278203004702036, 0.4576912076242964, 0.4883571678170285, 0.5176062746703725, 0.5431718588551843, 0.5624795545853342 ], "n_components": 10 }, "length": 3.0, "package": "GROMACS", "forcefield": "GLYCAM_06j", "temperature": 300.0, "pressure": 1.0, "salt": "200" }, "alpha": { "ID": "GS00035", "name": "LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpNAca1-OH", "glycam": "LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpNAca1-OH", "iupac": "Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)GlcNAc(a1-", "iupac_extended": "α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-α-D-GlcpNAc-(1→", "glytoucan": "G00590OY", "wurcs": "WURCS=2.0/4,5,4/[a2122h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4/a4-b1_b3-c1_c3-d1_d2-e1" }, "beta": { "ID": "GS00035", "name": "LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpNAca1-OH", "glycam": "LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-OH", "iupac": "Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-", "iupac_extended": "α-L-Fucp-(1→2)-β-D-Galp-(1→3)-β-D-GlcpNAc-(1→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→", "glytoucan": "G66677YT", "wurcs": "WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-1-2-3/a4-b1_b3-c1_c3-d1_d2-e1" }, "search_meta": { "common_names": [], "description": "", "keywords": [] } }