{ "archetype": { "ID": "GS00038", "name": "DGlcpNS[6S]a1-4LIdopA[2S]a1-4DGlcpNS[6S]a1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNSa1-4LIdopAa1-4DGlcpNAc[6S]a1-4DGlcpAb1-OH", "glycam": "DGlcpNS[6S]a1-4LIdopA[2S]a1-4DGlcpNS[6S]a1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNSa1-4LIdopAa1-4DGlcpNAc[6S]a1-4DGlcpA", "iupac": "GlcNS6S(a1-4)IdoA2S(a1-4)GlcNS6S(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNS(a1-4)IdoA(a1-4)GlcNAc6S(a1-4)GlcA", "iupac_extended": "α-D-GlcpN2,6S2-(1→4)-α-L-IdopA2S-(1→4)-α-D-GlcpN2,6S2-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpN2S-(1→4)-α-L-IdopA-(1→4)-α-D-GlcpNAc6S-(1→4)-D-GlcA", "glytoucan": "G85907IW", "wurcs": "WURCS=2.0/8,10,9/[u2122A][a2122h-1a_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a2121A-1a_1-5][a2122h-1a_1-5_2*NSO/3=O/3=O][a2122A-1b_1-5][a2122h-1a_1-5_2*NCC/3=O][a2122h-1a_1-5_2*NSO/3=O/3=O_6*OSO/3=O/3=O][a2121A-1a_1-5_2*OSO/3=O/3=O]/1-2-3-4-5-6-5-7-8-7/a4-b1_b4-c1_c4-d1_d4-e1_e4-f1_f4-g1_g4-h1_h4-i1_i4-j1", "glycoct": "RES\n1b:b-dglc-HEX-1:5|-1:a\n2b:a-dglc-HEX-1:5\n3b:a-lido-HEX-1:5|-1:a\n4b:a-dglc-HEX-1:5\n5s:n-sulfate\n6b:b-dglc-HEX-1:5|-1:a\n7b:a-dglc-HEX-1:5\n8s:n-acetyl\n9b:b-dglc-HEX-1:5|-1:a\n10b:a-dglc-HEX-1:5\n11b:a-lido-HEX-1:5\n12s:sulfate\n13b:a-dglc-HEX-1:5\n14s:sulfate\n15s:sulfate\n16s:sulfate\nLIN\n1:1o(4+1)2d\n2:2o(4+1)3d\n3:3o(4+1)4d\n4:4d(-1+1)5n\n5:4o(4+1)6d\n6:6o(4+1)7d\n7:7d(2+1)8n\n8:7o(4+1)9d\n9:9o(4+1)10d\n10:10o(4+1)11d\n11:11o(2+1)12n\n12:11o(4+1)13d\n13:13o(6+1)14n\n14:10o(6+1)15n\n15:2o(6+1)16n\n", "smiles": "O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@H]2O[C@H](COS(=O)(=O)O)[C@@H](O[C@@H]3O[C@@H](C(=O)O)[C@@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](C(=O)O)[C@@H](O[C@H]6O[C@H](CO)[C@@H](O[C@@H]7O[C@H](C(=O)O)[C@@H](O[C@H]8O[C@H](COS(=O)(=O)O)[C@@H](O[C@@H]9O[C@@H](C(=O)O)[C@@H](O[C@H]%10O[C@H](COS(=O)(=O)O)[C@@H](O)[C@H](O)[C@H]%10NS(=O)(=O)O)[C@H](O)[C@H]9OS(=O)(=O)O)[C@H](O)[C@H]8NS(=O)(=O)O)[C@H](O)[C@H]7O)[C@H](O)[C@H]6NC(C)=O)[C@H](O)[C@H]5O)[C@H](O)[C@H]4NS(=O)(=O)O)[C@H](O)[C@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@H]1C(=O)O", "oxford": null, "mass": 2347.23, "motifs": [], "termini": [ "GlcNS6S(a1-4)" ], "components": { "GlcA": 3, "GlcNS6S": 2, "IdoA2S": 1, "GlcNAc": 1, "GlcNS": 1, "IdoA": 1, "GlcNAc6S": 1 }, "composition": { "HexA": 5, "HexN": 3, "HexNAc": 2, "S": 7 }, "rot_bonds": 1, "hbond_donor": 5, "hbond_acceptor": 6, "entropy": 14.330341218531428, "clusters": { "Cluster 0": 46.19, "Cluster 1": 22.5, "Cluster 2": 13.76, "Cluster 3": 13.48, "Cluster 4": 4.08 }, "coverage_clusters": { "Cluster 0": 39.32, "Cluster 1": 28.6733, "Cluster 2": 11.0867, "Cluster 3": 3.52, "Cluster 4": 3.4667, "Cluster 5": 2.36, "Cluster 6": 2.34, "Cluster 7": 1.7933, "Cluster 8": 1.6233, "Cluster 9": 1.4367, "Cluster 10": 1.1, "Cluster 11": 0.5633, "Cluster 12": 0.53, "Cluster 13": 0.44, "Cluster 14": 0.3767, "Cluster 15": 0.2967, "Cluster 16": 0.17, "Cluster 17": 0.16, "Cluster 18": 0.12, "Cluster 19": 0.0933, "Cluster 20": 0.09, "Cluster 21": 0.0833, "Cluster 22": 0.08, "Cluster 23": 0.07, "Cluster 24": 0.05, "Cluster 25": 0.03, "Cluster 26": 0.03, "Cluster 27": 0.0267, "Cluster 28": 0.0267, "Cluster 29": 0.0167, "Cluster 30": 0.0167, "Cluster 31": 0.0067, "Cluster 32": 0.0033 }, "silhouette_scores": { "2": 0.45570889025052475, "3": 0.25682904576868615, "4": 0.25859437278396086, "5": 0.25452287710940974, "6": 0.23659641330955336, "7": 0.23885475731107905, "8": 0.23359492296690237 }, "coverage_clusters_per_main": { "0": [ 21, 22, 30 ], "1": [ 7, 11, 19, 29 ], "2": [ 1, 2, 3, 4, 5, 6, 8, 9, 10, 12, 14, 15, 16, 20, 24, 26, 28, 31, 32 ], "3": [ 17, 18, 23, 25 ], "4": [ 0, 13, 27 ] }, "pca_variance": { "explained_variance_ratio": [ 0.17822013547338628, 0.07018154476977394, 0.06602587399402841, 0.046955135046021265, 0.041462419618696775, 0.03462651860346469, 0.027450776356893525, 0.022765434939084356, 0.0201311243031326, 0.017843014421079707 ], "cumulative_variance": [ 0.17822013547338628, 0.24840168024316023, 0.31442755423718866, 0.36138268928320993, 0.4028451089019067, 0.4374716275053714, 0.4649224038622649, 0.48768783880134925, 0.5078189631044818, 0.5256619775255615 ], "n_components": 10 }, "length": 1.5, "package": "AMBER", "forcefield": "GLYCAM_06j_GAG", "temperature": 300.0, "pressure": 1.0, "salt": "200" }, "alpha": { "ID": "GS00038", "name": "DGlcpNS[6S]a1-4LIdopA[2S]a1-4DGlcpNS[6S]a1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNSa1-4LIdopAa1-4DGlcpNAc[6S]a1-4DGlcpAb1-OH", "glycam": "DGlcpNS[6S]a1-4LIdopA[2S]a1-4DGlcpNS[6S]a1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNSa1-4LIdopAa1-4DGlcpNAc[6S]a1-4DGlcpAa1-OH", "iupac": "GlcNS6S(a1-4)IdoA2S(a1-4)GlcNS6S(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNS(a1-4)IdoA(a1-4)GlcNAc6S(a1-4)GlcA(a1-", "iupac_extended": "α-D-GlcpN2,6S2-(1→4)-α-L-IdopA2S-(1→4)-α-D-GlcpN2,6S2-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpN2S-(1→4)-α-L-IdopA-(1→4)-α-D-GlcpNAc6S-(1→4)-α-D-GlcpA-(1→", "glytoucan": null, "wurcs": "WURCS=2.0/8,10,9/[a2122A-1a_1-5][a2122h-1a_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a2121A-1a_1-5][a2122h-1a_1-5_2*NSO/3=O/3=O][a2122A-1b_1-5][a2122h-1a_1-5_2*NCC/3=O][a2122h-1a_1-5_2*NSO/3=O/3=O_6*OSO/3=O/3=O][a2121A-1a_1-5_2*OSO/3=O/3=O]/1-2-3-4-5-6-5-7-8-7/a4-b1_b4-c1_c4-d1_d4-e1_e4-f1_f4-g1_g4-h1_h4-i1_i4-j1" }, "beta": { "ID": "GS00038", "name": "DGlcpNS[6S]a1-4LIdopA[2S]a1-4DGlcpNS[6S]a1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNSa1-4LIdopAa1-4DGlcpNAc[6S]a1-4DGlcpAb1-OH", "glycam": "DGlcpNS[6S]a1-4LIdopA[2S]a1-4DGlcpNS[6S]a1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNSa1-4LIdopAa1-4DGlcpNAc[6S]a1-4DGlcpAb1-OH", "iupac": "GlcNS6S(a1-4)IdoA2S(a1-4)GlcNS6S(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNS(a1-4)IdoA(a1-4)GlcNAc6S(a1-4)GlcA(b1-", "iupac_extended": null, "glytoucan": null, "wurcs": null }, "search_meta": { "common_names": [], "description": "", "keywords": [ "GAG" ] } }