{ "archetype": { "ID": "GS00040", "name": "DGlcpNSa1-4LIdopAa1-4DGlcpNSa1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNSa1-4LIdopAa1-4DGlcpNAca1-4DGlcpAb1-OH", "glycam": "DGlcpNSa1-4LIdopAa1-4DGlcpNSa1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNSa1-4LIdopAa1-4DGlcpNAca1-4DGlcpA", "iupac": "GlcNS(a1-4)IdoA(a1-4)GlcNS(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNS(a1-4)IdoA(a1-4)GlcNAc(a1-4)GlcA", "iupac_extended": "α-D-GlcpN2S-(1→4)-α-L-IdopA-(1→4)-α-D-GlcpN2S-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpN2S-(1→4)-α-L-IdopA-(1→4)-α-D-GlcpNAc-(1→4)-D-GlcA", "glytoucan": "G87877UE", "wurcs": "WURCS=2.0/5,10,9/[u2122A][a2122h-1a_1-5_2*NCC/3=O][a2121A-1a_1-5][a2122h-1a_1-5_2*NSO/3=O/3=O][a2122A-1b_1-5]/1-2-3-4-5-2-5-4-3-4/a4-b1_b4-c1_c4-d1_d4-e1_e4-f1_f4-g1_g4-h1_h4-i1_i4-j1", "glycoct": "RES\n1b:b-dglc-HEX-1:5|-1:a\n2b:a-dglc-HEX-1:5\n3s:n-acetyl\n4b:a-lido-HEX-1:5|-1:a\n5b:a-dglc-HEX-1:5\n6s:n-sulfate\n7b:b-dglc-HEX-1:5|-1:a\n8b:a-dglc-HEX-1:5\n9s:n-acetyl\n10b:b-dglc-HEX-1:5|-1:a\n11b:a-dglc-HEX-1:5\n12s:n-sulfate\n13b:a-lido-HEX-1:5|-1:a\n14b:a-dglc-HEX-1:5\n15s:n-sulfate\nLIN\n1:1o(4+1)2d\n2:2d(2+1)3n\n3:2o(4+1)4d\n4:4o(4+1)5d\n5:5d(-1+1)6n\n6:5o(4+1)7d\n7:7o(4+1)8d\n8:8d(2+1)9n\n9:8o(4+1)10d\n10:10o(4+1)11d\n11:11d(-1+1)12n\n12:11o(4+1)13d\n13:13o(4+1)14d\n14:14d(-1+1)15n\n", "smiles": "O1C(O)[C@H](O)[C@@H](O)[C@H](O[C@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@@H](C(=O)O)[C@@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](C(=O)O)[C@@H](O[C@H]6O[C@H](CO)[C@@H](O[C@@H]7O[C@H](C(=O)O)[C@@H](O[C@H]8O[C@H](CO)[C@@H](O[C@@H]9O[C@@H](C(=O)O)[C@@H](O[C@H]%10O[C@H](CO)[C@@H](O)[C@H](O)[C@H]%10NS(=O)(=O)O)[C@H](O)[C@H]9O)[C@H](O)[C@H]8NS(=O)(=O)O)[C@H](O)[C@H]7O)[C@H](O)[C@H]6NC(C)=O)[C@H](O)[C@H]5O)[C@H](O)[C@H]4NS(=O)(=O)O)[C@H](O)[C@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@H]1C(=O)O", "oxford": null, "mass": 2027.41, "motifs": [], "termini": [ "GlcNS(a1-4)" ], "components": { "GlcNS": 3, "GlcA": 3, "IdoA": 2, "GlcNAc": 2 }, "composition": { "HexA": 5, "HexN": 3, "HexNAc": 2, "S": 3 }, "rot_bonds": 1, "hbond_donor": 5, "hbond_acceptor": 6, "entropy": 13.704902004871958, "clusters": { "Cluster 0": 43.21, "Cluster 1": 31.28, "Cluster 2": 12.91, "Cluster 3": 10.83, "Cluster 4": 1.77 }, "coverage_clusters": { "Cluster 0": 42.3179, "Cluster 1": 23.8787, "Cluster 2": 11.1559, "Cluster 3": 4.4184, "Cluster 4": 4.4084, "Cluster 5": 4.3672, "Cluster 6": 3.3316, "Cluster 7": 1.5569, "Cluster 8": 1.0412, "Cluster 9": 0.7812, "Cluster 10": 0.6645, "Cluster 11": 0.3678, "Cluster 12": 0.3167, "Cluster 13": 0.2334, "Cluster 14": 0.1811, "Cluster 15": 0.1556, "Cluster 16": 0.1378, "Cluster 17": 0.1311, "Cluster 18": 0.1167, "Cluster 19": 0.1133, "Cluster 20": 0.0867, "Cluster 21": 0.0711, "Cluster 22": 0.0545, "Cluster 23": 0.0333, "Cluster 24": 0.0211, "Cluster 25": 0.0167, "Cluster 26": 0.0156, "Cluster 27": 0.0144, "Cluster 28": 0.0111 }, "silhouette_scores": { "2": 0.5404357041434086, "3": 0.35089389871719073, "4": 0.23023185875817367, "5": 0.24396701513271257, "6": 0.25079647085277196, "7": 0.2570566646027742, "8": 0.2422793877385002 }, "coverage_clusters_per_main": { "0": [ 11, 13 ], "1": [ 1, 3, 6, 15, 16, 24, 25 ], "2": [ 2, 10, 14, 19, 20, 26 ], "3": [ 4, 5, 7, 8, 9, 12, 17, 18, 22, 23, 28 ], "4": [ 0, 21, 27 ] }, "pca_variance": { "explained_variance_ratio": [ 0.2603447592889585, 0.08781123397366335, 0.05334439913943329, 0.049423602268955535, 0.035518390774922456, 0.029035154052733974, 0.02581097169158071, 0.02149128160463206, 0.01845650642096005, 0.015686937206596592 ], "cumulative_variance": [ 0.2603447592889585, 0.34815599326262187, 0.40150039240205515, 0.4509239946710107, 0.48644238544593316, 0.5154775394986671, 0.5412885111902479, 0.56277979279488, 0.5812362992158401, 0.5969232364224367 ], "n_components": 10 }, "length": 1.5, "package": "AMBER", "forcefield": "GLYCAM_06j_GAG", "temperature": 300.0, "pressure": 1.0, "salt": "200" }, "alpha": { "ID": "GS00040", "name": "DGlcpNSa1-4LIdopAa1-4DGlcpNSa1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNSa1-4LIdopAa1-4DGlcpNAca1-4DGlcpAb1-OH", "glycam": "DGlcpNSa1-4LIdopAa1-4DGlcpNSa1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNSa1-4LIdopAa1-4DGlcpNAca1-4DGlcpAa1-OH", "iupac": "GlcNS(a1-4)IdoA(a1-4)GlcNS(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNS(a1-4)IdoA(a1-4)GlcNAc(a1-4)GlcA(a1-", "iupac_extended": "α-D-GlcpN2S-(1→4)-α-L-IdopA-(1→4)-α-D-GlcpN2S-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpNAc-(1→4)-β-D-GlcpA-(1→4)-α-D-GlcpN2S-(1→4)-α-L-IdopA-(1→4)-α-D-GlcpNAc-(1→4)-α-D-GlcpA-(1→", "glytoucan": null, "wurcs": "WURCS=2.0/5,10,9/[a2122A-1a_1-5][a2122h-1a_1-5_2*NCC/3=O][a2121A-1a_1-5][a2122h-1a_1-5_2*NSO/3=O/3=O][a2122A-1b_1-5]/1-2-3-4-5-2-5-4-3-4/a4-b1_b4-c1_c4-d1_d4-e1_e4-f1_f4-g1_g4-h1_h4-i1_i4-j1" }, "beta": { "ID": "GS00040", "name": "DGlcpNSa1-4LIdopAa1-4DGlcpNSa1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNSa1-4LIdopAa1-4DGlcpNAca1-4DGlcpAb1-OH", "glycam": "DGlcpNSa1-4LIdopAa1-4DGlcpNSa1-4DGlcpAb1-4DGlcpNAca1-4DGlcpAb1-4DGlcpNSa1-4LIdopAa1-4DGlcpNAca1-4DGlcpAb1-OH", "iupac": "GlcNS(a1-4)IdoA(a1-4)GlcNS(a1-4)GlcA(b1-4)GlcNAc(a1-4)GlcA(b1-4)GlcNS(a1-4)IdoA(a1-4)GlcNAc(a1-4)GlcA(b1-", "iupac_extended": null, "glytoucan": null, "wurcs": null }, "search_meta": { "common_names": [], "description": "", "keywords": [ "GAG" ] } }