{ "archetype": { "ID": "GS00041", "name": "DNeup5Aca2-3DGalpb1-4DGlcpNAca1-OH", "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAc", "iupac": "Neu5Ac(a2-3)Gal(b1-4)GlcNAc", "iupac_extended": "α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-D-GlcNAc", "glytoucan": "G42049JU", "wurcs": "WURCS=2.0/3,3,2/[u2122h_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a4-b1_b3-c2", "glycoct": "RES\n1b:b-dglc-HEX-1:5\n2s:n-acetyl\n3b:b-dgal-HEX-1:5\n4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\n5s:n-acetyl\nLIN\n1:1d(2+1)2n\n2:1o(4+1)3d\n3:3o(3+2)4d\n4:4d(5+1)5n\n", "smiles": "O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@]3(C(=O)O)C[C@H](O)[C@@H](NC(C)=O)[C@H]([C@H](O)[C@H](O)CO)O3)[C@H]2O)[C@H]1CO", "oxford": null, "mass": 674.24, "motifs": [ { "motif": "G30207PZ", "motif_label": "GM4" } ], "termini": [ "Neu5Ac(a2-3)" ], "components": { "Neu5Ac": 1, "Gal": 1, "GlcNAc": 1 }, "composition": { "Hex": 1, "HexNAc": 1, "Neu5Ac": 1 }, "rot_bonds": 12, "hbond_donor": 13, "hbond_acceptor": 19, "entropy": 10.001858854388878, "clusters": { "Cluster 0": 30.22, "Cluster 1": 22.03, "Cluster 2": 17.81, "Cluster 3": 17.53, "Cluster 4": 12.41 }, "coverage_clusters": { "Cluster 0": 23.6726, "Cluster 1": 23.5126, "Cluster 2": 22.5302, "Cluster 3": 13.1737, "Cluster 4": 5.092, "Cluster 5": 4.1321, "Cluster 6": 2.8847, "Cluster 7": 1.9223, "Cluster 8": 1.1724, "Cluster 9": 0.7724, "Cluster 10": 0.5099, "Cluster 11": 0.3025, "Cluster 12": 0.1925, "Cluster 13": 0.13 }, "silhouette_scores": { "2": 0.42622762472276665, "3": 0.4349366183523531, "4": 0.4579506955093207, "5": 0.35571270054854387, "6": 0.3713007879224341, "7": 0.3751226860651342, "8": 0.37550806841140827 }, "coverage_clusters_per_main": { "0": [ 4, 13 ], "1": [ 2, 8 ], "2": [ 0, 1, 3, 5, 6, 7, 11, 12 ], "3": [ 9 ], "4": [ 10 ] }, "pca_variance": { "explained_variance_ratio": [ 0.17728675866773522, 0.12579013568579783, 0.08009064021636872, 0.04114975322794027, 0.03713107784239012, 0.036123183099182395, 0.030686302144130775, 0.024003999161537334, 0.022947385600037996, 0.020304283011719274 ], "cumulative_variance": [ 0.17728675866773522, 0.303076894353533, 0.3831675345699017, 0.424317287797842, 0.4614483656402321, 0.4975715487394145, 0.5282578508835453, 0.5522618500450825, 0.5752092356451205, 0.5955135186568398 ], "n_components": 10 }, "length": 4.0, "package": "GROMACS", "forcefield": "GLYCAM_06j", "temperature": 300.0, "pressure": 1.0, "salt": "150" }, "alpha": { "ID": "GS00041", "name": "DNeup5Aca2-3DGalpb1-4DGlcpNAca1-OH", "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAca1-OH", "iupac": "Neu5Ac(a2-3)Gal(b1-4)GlcNAc(a1-", "iupac_extended": "α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-α-D-GlcpNAc-(1→", "glytoucan": "G23094JF", "wurcs": "WURCS=2.0/3,3,2/[a2122h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a4-b1_b3-c2" }, "beta": { "ID": "GS00041", "name": "DNeup5Aca2-3DGalpb1-4DGlcpNAca1-OH", "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-OH", "iupac": "Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-", "iupac_extended": "α-D-Neup5Ac-(2→3)-β-D-Galp-(1→4)-β-D-GlcpNAc-(1→", "glytoucan": "G00065MO", "wurcs": "WURCS=2.0/3,3,2/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a4-b1_b3-c2" }, "search_meta": { "common_names": [], "description": "", "keywords": [] } }