{ "archetype": { "ID": "GS00047", "name": "LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-OH", "glycam": "LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAc", "iupac": "Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc", "iupac_extended": "α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-D-GlcNAc", "glytoucan": "G04690JX", "wurcs": "WURCS=2.0/3,4,3/[u2122h_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-2/a3-b1_a4-c1_c2-d1", "glycoct": "RES\n1b:b-dglc-HEX-1:5\n2s:n-acetyl\n3b:a-lgal-HEX-1:5|6:d\n4b:b-dgal-HEX-1:5\n5b:a-lgal-HEX-1:5|6:d\nLIN\n1:1d(2+1)2n\n2:1o(3+1)3d\n3:1o(4+1)4d\n4:4o(2+1)5d\n", "smiles": "O1C(O)[C@H](NC(C)=O)[C@@H](O[C@@H]2O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O[C@@H]3O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]3O)[C@H]1CO", "oxford": null, "mass": 675.26, "motifs": [], "termini": [ "Fuc(a1-3)", "Fuc(a1-2)" ], "components": { "Fuc": 2, "Gal": 1, "GlcNAc": 1 }, "composition": { "Hex": 1, "HexNAc": 1, "dHex": 2 }, "rot_bonds": 9, "hbond_donor": 12, "hbond_acceptor": 19, "entropy": 10.902937389438117, "clusters": { "Cluster 0": 31.41, "Cluster 1": 24.86, "Cluster 2": 21.04, "Cluster 3": 17.3, "Cluster 4": 5.39 }, "coverage_clusters": { "Cluster 0": 56.2844, "Cluster 1": 13.2987, "Cluster 2": 10.6189, "Cluster 3": 7.4326, "Cluster 4": 2.3898, "Cluster 5": 2.2364, "Cluster 6": 2.1964, "Cluster 7": 1.8831, "Cluster 8": 1.8631, "Cluster 9": 0.6866, "Cluster 10": 0.2766, "Cluster 11": 0.25, "Cluster 12": 0.19, "Cluster 13": 0.1567, "Cluster 14": 0.1567, "Cluster 15": 0.0433, "Cluster 16": 0.0367 }, "silhouette_scores": { "2": 0.37620732733909246, "3": 0.23865146941798449, "4": 0.2219175422359, "5": 0.21904413595825625, "6": 0.21282853913647004, "7": 0.20878952478193688, "8": 0.2069387348208224 }, "coverage_clusters_per_main": { "0": [ 1, 4, 12 ], "1": [ 6, 15 ], "2": [ 3, 8, 16 ], "3": [ 2, 7, 10 ], "4": [ 0, 5, 9, 11, 13, 14 ] }, "pca_variance": { "explained_variance_ratio": [ 0.11853650285881334, 0.09925902041870371, 0.06150475179492393, 0.04935918646327947, 0.042845738249014505, 0.036638181980623435, 0.033073914063901144, 0.0318332259195892, 0.02538904008166762, 0.02482613764448654 ], "cumulative_variance": [ 0.11853650285881334, 0.21779552327751706, 0.279300275072441, 0.32865946153572045, 0.37150519978473495, 0.40814338176535836, 0.4412172958292595, 0.4730505217488487, 0.4984395618305163, 0.5232656994750028 ], "n_components": 10 }, "length": 1.5, "package": "GROMACS", "forcefield": "GLYCAM_06j", "temperature": 300.0, "pressure": 1.0, "salt": "150" }, "alpha": { "ID": "GS00047", "name": "LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-OH", "glycam": "LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAca1-OH", "iupac": "Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(a1-", "iupac_extended": "α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-α-D-GlcpNAc-(1→", "glytoucan": "G82236PZ", "wurcs": "WURCS=2.0/3,4,3/[a2122h-1a_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-2/a3-b1_a4-c1_c2-d1" }, "beta": { "ID": "GS00047", "name": "LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-OH", "glycam": "LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-OH", "iupac": "Fuc(a1-2)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-", "iupac_extended": "α-L-Fucp-(1→2)-β-D-Galp-(1→4)[α-L-Fucp-(1→3)]-β-D-GlcpNAc-(1→", "glytoucan": "G00052MO", "wurcs": "WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-2/a3-b1_a4-c1_c2-d1" }, "search_meta": { "common_names": [], "description": "", "keywords": [] } }