{ "archetype": { "ID": "GS00049", "name": "DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAc[6S]b1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH", "glycam": "DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAc[6S]b1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAc", "iupac": "Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc6S(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc", "iupac_extended": "β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc6S-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-D-GlcNAc", "glytoucan": "G62223XV", "wurcs": "WURCS=2.0/7,10,9/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-4-6-5-7/a4-b1_a6-j1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_h4-i1", "glycoct": "RES\n1b:b-dglc-HEX-1:5\n2s:n-acetyl\n3b:b-dglc-HEX-1:5\n4s:n-acetyl\n5b:b-dman-HEX-1:5\n6b:a-dman-HEX-1:5\n7b:b-dglc-HEX-1:5\n8s:n-acetyl\n9b:b-dgal-HEX-1:5\n10b:a-dman-HEX-1:5\n11b:b-dglc-HEX-1:5\n12b:b-dgal-HEX-1:5\n13s:sulfate\n14b:a-lgal-HEX-1:5|6:d\nLIN\n1:1d(2+1)2n\n2:1o(4+1)3d\n3:3d(2+1)4n\n4:3o(4+1)5d\n5:5o(3+1)6d\n6:6o(2+1)7d\n7:7d(2+1)8n\n8:7o(4+1)9d\n9:5o(6+1)10d\n10:10o(2+1)11d\n11:11o(4+1)12d\n12:11o(6+1)13n\n13:1o(6+1)14d\n", "smiles": "O1C(O)[C@H](NC(C)=O)[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](COS(=O)(=O)O)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@H]1CO[C@@H]2O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O", "oxford": null, "mass": 1866.61, "motifs": [], "termini": [ "Fuc(a1-6)", "Gal(b1-4)" ], "components": { "GlcNAc": 3, "Man": 3, "Gal": 2, "GlcNAc6S": 1, "Fuc": 1 }, "composition": { "Hex": 5, "HexNAc": 4, "dHex": 1, "S": 1 }, "rot_bonds": 1, "hbond_donor": 5, "hbond_acceptor": 6, "entropy": 13.19475147175157, "clusters": { "Cluster 0": 53.39, "Cluster 1": 14.45, "Cluster 2": 12.56, "Cluster 3": 10.18, "Cluster 4": 9.42 }, "coverage_clusters": { "Cluster 0": 52.0448, "Cluster 1": 13.2962, "Cluster 2": 5.282, "Cluster 3": 4.5795, "Cluster 4": 3.7396, "Cluster 5": 3.6971, "Cluster 6": 3.5296, "Cluster 7": 2.5772, "Cluster 8": 1.8098, "Cluster 9": 1.6248, "Cluster 10": 1.5898, "Cluster 11": 1.3474, "Cluster 12": 0.9549, "Cluster 13": 0.8274, "Cluster 14": 0.6949, "Cluster 15": 0.5649, "Cluster 16": 0.5274, "Cluster 17": 0.5074, "Cluster 18": 0.3, "Cluster 19": 0.21, "Cluster 20": 0.085, "Cluster 21": 0.065, "Cluster 22": 0.0625, "Cluster 23": 0.0375, "Cluster 24": 0.0375, "Cluster 25": 0.0075 }, "silhouette_scores": { "2": 0.40608159412552736, "3": 0.45926207115393786, "4": 0.2924861199237449, "5": 0.3752320134496965, "6": 0.2909249886656388, "7": 0.2681544539521738, "8": 0.2696844654209117 }, "coverage_clusters_per_main": { "0": [ 5, 7, 21 ], "1": [ 0, 18, 25 ], "2": [ 1, 2, 4, 6, 11, 12, 13, 16, 17, 22, 23, 24 ], "3": [ 3, 8, 9, 15, 20 ], "4": [ 10, 14, 19 ] }, "pca_variance": { "explained_variance_ratio": [ 0.14490390456734376, 0.1331952399796202, 0.08125920445225951, 0.06356078488346029, 0.053045269216360325, 0.0456298751326177, 0.024756072186112768, 0.02177051963119428, 0.019854786490665268, 0.01849461306991454 ], "cumulative_variance": [ 0.14490390456734376, 0.27809914454696394, 0.3593583489992235, 0.42291913388268376, 0.4759644030990441, 0.5215942782316618, 0.5463503504177746, 0.5681208700489688, 0.5879756565396341, 0.6064702696095486 ], "n_components": 10 }, "length": 2.0, "package": "GROMACS", "forcefield": "GLYCAM_06j", "temperature": 300.0, "pressure": 1.0, "salt": "150" }, "alpha": { "ID": "GS00049", "name": "DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAc[6S]b1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH", "glycam": "DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAc[6S]b1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH", "iupac": "Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc6S(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(a1-", "iupac_extended": "β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc6S-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-α-D-GlcpNAc-(1→", "glytoucan": "G87411OD", "wurcs": "WURCS=2.0/7,10,9/[a2122h-1a_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-4-6-5-7/a4-b1_a6-j1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_h4-i1" }, "beta": { "ID": "GS00049", "name": "DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAc[6S]b1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAca1-OH", "glycam": "DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAc[6S]b1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH", "iupac": "Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc6S(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1-", "iupac_extended": "β-D-Galp-(1→4)-β-D-GlcpNAc-(1→2)-α-D-Manp-(1→3)[β-D-Galp-(1→4)-β-D-GlcpNAc6S-(1→2)-α-D-Manp-(1→6)]-β-D-Manp-(1→4)-β-D-GlcpNAc-(1→4)[α-L-Fucp-(1→6)]-β-D-GlcpNAc-(1→", "glytoucan": "G16588UI", "wurcs": "WURCS=2.0/6,10,9/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-3-5-4-6/a4-b1_a6-j1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_h4-i1" }, "search_meta": { "common_names": [], "description": "", "keywords": [ "Fucosylated N-Glycan", "N-Glycan" ] } }